RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 NLRP7Q8WX94 980 aa14.39□□□□□ -0.11
YBX3-210ENST00000540975 AK7Q96M32 723 aa14.39□□□□□ -0.11
YBX3-210ENST00000540975 SLC24A3Q9HC58 644 aa14.39□□□□□ -0.11
YBX3-210ENST00000540975 HCSTQ9UBK5 93 aa14.37□□□□□ -0.11
YBX3-210ENST00000540975 TPRNQ4KMQ1 711 aa14.36□□□□□ -0.11
YBX3-210ENST00000540975 DAXXQ9UER7 740 aaPredicted RBP14.35□□□□□ -0.11
YBX3-210ENST00000540975 TSR3Q9UJK0 312 aaKnown RBP14.35□□□□□ -0.11
YBX3-210ENST00000540975 SLF2Q8IX21 1173 aa14.34□□□□□ -0.11
YBX3-210ENST00000540975 HPS5Q9UPZ3 1129 aa14.34□□□□□ -0.11
YBX3-210ENST00000540975 TRIM66O15016 1216 aa14.33□□□□□ -0.12
YBX3-210ENST00000540975 PPP4CP60510 307 aa14.33□□□□□ -0.12
YBX3-210ENST00000540975 WBP1LQ9NX94 342 aa14.33□□□□□ -0.12
YBX3-210ENST00000540975 SLC4A3P48751 1232 aa14.32□□□□□ -0.12
YBX3-210ENST00000540975 RNF40O75150 1001 aa14.31□□□□□ -0.12
YBX3-210ENST00000540975 MDM2Q00987 491 aaPredicted RBP14.31□□□□□ -0.12
YBX3-210ENST00000540975 AMHR2Q16671 573 aa14.28□□□□□ -0.12
YBX3-210ENST00000540975 TMUB1Q9BVT8 246 aa14.28□□□□□ -0.12
YBX3-210ENST00000540975 SLC10A3P09131 477 aa14.27□□□□□ -0.13
YBX3-210ENST00000540975 CLCN1P35523 988 aa14.26□□□□□ -0.13
YBX3-210ENST00000540975 REPIN1Q9BWE0 567 aaKnown RBP14.26□□□□□ -0.13
YBX3-210ENST00000540975 NYAP1Q6ZVC0 841 aa14.25□□□□□ -0.13
YBX3-210ENST00000540975 NECTIN2Q92692 538 aa14.25□□□□□ -0.13
YBX3-210ENST00000540975 GPCPD1Q9NPB8 672 aa14.25□□□□□ -0.13
YBX3-210ENST00000540975 DDX11L8A8MPP1 907 aa14.24□□□□□ -0.13
YBX3-210ENST00000540975 RSPH4AQ5TD94 716 aa14.24□□□□□ -0.13
YBX3-210ENST00000540975 PRKCSHP14314 528 aaPredicted RBP14.23□□□□□ -0.13
YBX3-210ENST00000540975 SULF1Q8IWU6 871 aa14.23□□□□□ -0.13
YBX3-210ENST00000540975 PDE4DQ08499 809 aa14.22□□□□□ -0.13
YBX3-210ENST00000540975 TTLL12Q14166 644 aaPredicted RBP14.21□□□□□ -0.13
YBX3-210ENST00000540975 APLP1P51693 650 aa14.2□□□□□ -0.14
YBX3-210ENST00000540975 RDH13Q8NBN7 331 aa14.2□□□□□ -0.14
YBX3-210ENST00000540975 FAM217BQ9NTX9 383 aaPredicted RBP14.19□□□□□ -0.14
YBX3-210ENST00000540975 PARP9Q8IXQ6 854 aa14.18□□□□□ -0.14
YBX3-210ENST00000540975 SSTR3P32745 418 aaPredicted RBP14.17□□□□□ -0.14
YBX3-210ENST00000540975 CFHP08603 1231 aa14.16□□□□□ -0.14
YBX3-210ENST00000540975 CD46P15529 392 aa14.16□□□□□ -0.14
YBX3-210ENST00000540975 GIGYF2Q6Y7W6 1299 aaKnown RBP14.16□□□□□ -0.14
YBX3-210ENST00000540975 GCGRP47871 477 aa14.14□□□□□ -0.15
YBX3-210ENST00000540975 KMT5BQ4FZB7 885 aa14.14□□□□□ -0.15
YBX3-210ENST00000540975 PRR14Q9BWN1 585 aa14.14□□□□□ -0.15
YBX3-210ENST00000540975 ACTN4O43707 911 aaKnown RBP14.12□□□□□ -0.15
YBX3-210ENST00000540975 MS4A1P11836 297 aa14.07□□□□□ -0.16
YBX3-210ENST00000540975 TJAP1Q5JTD0 557 aa14.07□□□□□ -0.16
YBX3-210ENST00000540975 PCDHB3Q9Y5E6 796 aa14.07□□□□□ -0.16
YBX3-210ENST00000540975 MTRQ99707 1265 aa14.05□□□□□ -0.16
YBX3-210ENST00000540975 GPBP1L1Q9HC44 474 aaPredicted RBP14.05□□□□□ -0.16
YBX3-210ENST00000540975 ITGBL1O95965 494 aaPredicted RBP14.04□□□□□ -0.16
YBX3-210ENST00000540975 FUT2Q10981 343 aa14.04□□□□□ -0.16
YBX3-210ENST00000540975 BEGAINQ9BUH8 593 aa14.04□□□□□ -0.16
YBX3-210ENST00000540975 KDM4AO75164 1064 aa14.03□□□□□ -0.16
YBX3-210ENST00000540975 ATP6V1AP38606 617 aa14.02□□□□□ -0.17
YBX3-210ENST00000540975 COPS2P61201 443 aa14.02□□□□□ -0.17
YBX3-210ENST00000540975 PUS10Q3MIT2 529 aaKnown RBP14.02□□□□□ -0.17
YBX3-210ENST00000540975 BLOC1S3Q6QNY0 202 aa14.02□□□□□ -0.17
YBX3-210ENST00000540975 KDM4CQ9H3R0 1056 aa14.02□□□□□ -0.17
YBX3-210ENST00000540975 IL21Q9HBE4 155 aa14.02□□□□□ -0.17
YBX3-210ENST00000540975 PLA2G2EQ9NZK7 142 aa14.02□□□□□ -0.17
YBX3-210ENST00000540975 KCNC4Q03721 635 aa14.01□□□□□ -0.17
YBX3-210ENST00000540975 ZNF516Q92618 1163 aa14.01□□□□□ -0.17
YBX3-210ENST00000540975 NUTM1Q86Y26 1132 aa14□□□□□ -0.17
YBX3-210ENST00000540975 USP46P62068 366 aa13.98□□□□□ -0.17
YBX3-210ENST00000540975 NEUROD2Q15784 382 aa13.98□□□□□ -0.17
YBX3-210ENST00000540975 GRIPAP1Q4V328 841 aa13.98□□□□□ -0.17
YBX3-210ENST00000540975 MORN1Q5T089 497 aa13.98□□□□□ -0.17
YBX3-210ENST00000540975 SCUBE3Q8IX30 993 aa13.98□□□□□ -0.17
YBX3-210ENST00000540975 IFFO2Q5TF58 517 aa13.97□□□□□ -0.17
YBX3-210ENST00000540975 SPIRE2Q8WWL2 714 aa13.97□□□□□ -0.17
YBX3-210ENST00000540975 ZPR1O75312 459 aa13.96□□□□□ -0.17
YBX3-210ENST00000540975 NR1I2O75469 434 aa13.96□□□□□ -0.17
YBX3-210ENST00000540975 BRPF1P55201 1214 aaPredicted RBP13.96□□□□□ -0.17
YBX3-210ENST00000540975 SLC27A5Q9Y2P5 690 aa13.94□□□□□ -0.18
YBX3-210ENST00000540975 HOXA2O43364 376 aa13.93□□□□□ -0.18
YBX3-210ENST00000540975 TBC1D2Q9BYX2 928 aa13.93□□□□□ -0.18
YBX3-210ENST00000540975 FAM117AQ9C073 453 aa13.93□□□□□ -0.18
YBX3-210ENST00000540975 NKX2-3Q8TAU0 364 aa13.92□□□□□ -0.18
YBX3-210ENST00000540975 DIXDC1Q155Q3 683 aa13.91□□□□□ -0.18
YBX3-210ENST00000540975 HLA-CQ95604 372 aa13.91□□□□□ -0.18
YBX3-210ENST00000540975 MOXD2PA6NHM9 499 aa13.88□□□□□ -0.19
YBX3-210ENST00000540975 NDUFV2P19404 249 aa13.88□□□□□ -0.19
YBX3-210ENST00000540975 DDRGK1Q96HY6 314 aa13.88□□□□□ -0.19
YBX3-210ENST00000540975 GUCA2AQ02747 115 aa13.87□□□□□ -0.19
YBX3-210ENST00000540975 THAP11Q96EK4 314 aa13.87□□□□□ -0.19
YBX3-210ENST00000540975 SALL2Q9Y467 1007 aaPredicted RBP13.87□□□□□ -0.19
YBX3-210ENST00000540975 BRICD5Q6PL45 260 aa13.86□□□□□ -0.19
YBX3-210ENST00000540975 PLEKHG3A1L390 1219 aa13.85□□□□□ -0.19
YBX3-210ENST00000540975 FDX1P10109 184 aa13.85□□□□□ -0.19
YBX3-210ENST00000540975 TLL1O43897 1013 aa13.84□□□□□ -0.19
YBX3-210ENST00000540975 FMNL1O95466 1100 aaPredicted RBP13.84□□□□□ -0.19
YBX3-210ENST00000540975 Q3C1V9 767 aa13.84□□□□□ -0.19
YBX3-210ENST00000540975 SPSB2Q99619 263 aa13.84□□□□□ -0.19
YBX3-210ENST00000540975 RSPH6AQ9H0K4 717 aa13.84□□□□□ -0.19
YBX3-210ENST00000540975 PCDHGC3Q9UN70 934 aa13.84□□□□□ -0.19
YBX3-210ENST00000540975 MYSM1Q5VVJ2 828 aa13.83□□□□□ -0.2
YBX3-210ENST00000540975 IL27Q8NEV9 243 aa13.83□□□□□ -0.2
YBX3-210ENST00000540975 SPTLC1O15269 473 aa13.82□□□□□ -0.2
YBX3-210ENST00000540975 GJA5P36382 358 aa13.82□□□□□ -0.2
YBX3-210ENST00000540975 RSBN1LQ6PCB5 846 aaPredicted RBP13.82□□□□□ -0.2
YBX3-210ENST00000540975 RNF19BQ6ZMZ0 732 aa13.82□□□□□ -0.2
YBX3-210ENST00000540975 RIC3Q7Z5B4 369 aa13.82□□□□□ -0.2
YBX3-210ENST00000540975 ADH1BP00325 375 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms