RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 KIAA1210Q9ULL0 1709 aa23.64■■□□□ 1.38
COPS3-212ENST00000539941 RPGRIP1LQ68CZ1 1315 aa23.64■■□□□ 1.37
COPS3-212ENST00000539941 FER1L4A9Z1Z3 1794 aa23.62■■□□□ 1.37
COPS3-212ENST00000539941 NRXN1Q9ULB1 1477 aa23.61■■□□□ 1.37
COPS3-212ENST00000539941 SPATA31D1Q6ZQQ2 1576 aa23.61■■□□□ 1.37
COPS3-212ENST00000539941 DDX10Q13206 875 aaKnown RBP23.61■■□□□ 1.37
COPS3-212ENST00000539941 LMTK3Q96Q04 1460 aa23.61■■□□□ 1.37
COPS3-212ENST00000539941 PPLO60437 1756 aa23.6■■□□□ 1.37
COPS3-212ENST00000539941 WASHC2AQ641Q2 1341 aa23.6■■□□□ 1.37
COPS3-212ENST00000539941 MIER1Q8N108 512 aa23.6■■□□□ 1.37
COPS3-212ENST00000539941 ESF1Q9H501 851 aaKnown RBP23.59■■□□□ 1.37
COPS3-212ENST00000539941 CCDC7Q96M83 1385 aa23.58■■□□□ 1.37
COPS3-212ENST00000539941 NBPF1Q3BBV0 1214 aa23.57■■□□□ 1.36
COPS3-212ENST00000539941 CHGAP10645 457 aaKnown RBP23.57■■□□□ 1.36
COPS3-212ENST00000539941 IDI1Q13907 227 aa23.57■■□□□ 1.36
COPS3-212ENST00000539941 HSPA2P54652 639 aa23.55■■□□□ 1.36
COPS3-212ENST00000539941 TMEM131LA2VDJ0 1609 aa23.54■■□□□ 1.36
COPS3-212ENST00000539941 ZMYM3Q14202 1370 aa23.54■■□□□ 1.36
COPS3-212ENST00000539941 FBXO31Q5XUX0 539 aaPredicted RBP23.54■■□□□ 1.36
COPS3-212ENST00000539941 NEXMIFQ5QGS0 1516 aa23.52■■□□□ 1.36
COPS3-212ENST00000539941 IQGAP1P46940 1657 aa23.52■■□□□ 1.36
COPS3-212ENST00000539941 C11orf95C9JLR9 678 aaPredicted RBP23.51■■□□□ 1.35
COPS3-212ENST00000539941 KIF7Q2M1P5 1343 aa23.51■■□□□ 1.35
COPS3-212ENST00000539941 ADGRF5Q8IZF2 1346 aa23.51■■□□□ 1.35
COPS3-212ENST00000539941 ZFYVE9O95405 1425 aa23.51■■□□□ 1.35
COPS3-212ENST00000539941 ST20-MTHFSA0A0A6YYL1 179 aa23.51■■□□□ 1.35
COPS3-212ENST00000539941 PIK3C2GO75747 1445 aa23.5■■□□□ 1.35
COPS3-212ENST00000539941 SCAF11Q99590 1463 aaKnown RBP23.49■■□□□ 1.35
COPS3-212ENST00000539941 SETBP1Q9Y6X0 1596 aa23.48■■□□□ 1.35
COPS3-212ENST00000539941 VGFO15240 615 aaPredicted RBP23.48■■□□□ 1.35
COPS3-212ENST00000539941 MYO5BQ9ULV0 1848 aa23.47■■□□□ 1.35
COPS3-212ENST00000539941 EIF3AQ14152 1382 aaKnown RBP23.44■■□□□ 1.34
COPS3-212ENST00000539941 SETD1BQ9UPS6 1966 aaKnown RBP23.44■■□□□ 1.34
COPS3-212ENST00000539941 CFAP70Q5T0N1 1121 aa23.43■■□□□ 1.34
COPS3-212ENST00000539941 C14orf93Q9H972 538 aaKnown RBP23.43■■□□□ 1.34
COPS3-212ENST00000539941 C3P01024 1663 aa23.43■■□□□ 1.34
COPS3-212ENST00000539941 KDM5AP29375 1690 aaKnown RBP23.41■■□□□ 1.34
COPS3-212ENST00000539941 TNRQ92752 1358 aa23.41■■□□□ 1.34
COPS3-212ENST00000539941 A2ML1A8K2U0 1454 aa23.41■■□□□ 1.34
COPS3-212ENST00000539941 ANP32CO43423 234 aa23.4■■□□□ 1.34
COPS3-212ENST00000539941 ILDR1Q86SU0 546 aaPredicted RBP23.4■■□□□ 1.34
COPS3-212ENST00000539941 TESK2Q96S53 571 aa23.4■■□□□ 1.34
COPS3-212ENST00000539941 STAG3Q9UJ98 1225 aa23.4■■□□□ 1.34
COPS3-212ENST00000539941 GTF3C3Q9Y5Q9 886 aa23.38■■□□□ 1.33
COPS3-212ENST00000539941 ADGRB1O14514 1584 aa23.37■■□□□ 1.33
COPS3-212ENST00000539941 SLC24A1O60721 1099 aa23.37■■□□□ 1.33
COPS3-212ENST00000539941 MYO3AQ8NEV4 1616 aa23.35■■□□□ 1.33
COPS3-212ENST00000539941 TMF1P82094 1093 aa23.35■■□□□ 1.33
COPS3-212ENST00000539941 NLRP1Q9C000 1473 aa23.35■■□□□ 1.33
COPS3-212ENST00000539941 RIMS2Q9UQ26 1411 aa23.32■■□□□ 1.32
COPS3-212ENST00000539941 CCER2I3L3R5 266 aa23.31■■□□□ 1.32
COPS3-212ENST00000539941 DISP3Q9P2K9 1392 aa23.3■■□□□ 1.32
COPS3-212ENST00000539941 SBNO2Q9Y2G9 1366 aa23.3■■□□□ 1.32
COPS3-212ENST00000539941 UBR1Q8IWV7 1749 aa23.29■■□□□ 1.32
COPS3-212ENST00000539941 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.29■■□□□ 1.32
COPS3-212ENST00000539941 CDCA8Q53HL2 280 aa23.28■■□□□ 1.32
COPS3-212ENST00000539941 NUTM2DQ5VT03 806 aaPredicted RBP23.28■■□□□ 1.32
COPS3-212ENST00000539941 POLR3GLQ9BT43 218 aa23.28■■□□□ 1.32
COPS3-212ENST00000539941 HDGFP51858 240 aaKnown RBP23.28■■□□□ 1.32
COPS3-212ENST00000539941 STRCQ7RTU9 1775 aa23.25■■□□□ 1.31
COPS3-212ENST00000539941 ALKQ9UM73 1620 aa23.24■■□□□ 1.31
COPS3-212ENST00000539941 DMRT2Q9Y5R5 561 aa23.24■■□□□ 1.31
COPS3-212ENST00000539941 ASXL1Q8IXJ9 1541 aa23.24■■□□□ 1.31
COPS3-212ENST00000539941 CENPJQ9HC77 1338 aaPredicted RBP23.23■■□□□ 1.31
COPS3-212ENST00000539941 TMEM2Q9UHN6 1383 aa23.22■■□□□ 1.31
COPS3-212ENST00000539941 TMEM132EQ6IEE7 984 aa23.22■■□□□ 1.31
COPS3-212ENST00000539941 ARHGEF28Q8N1W1 1705 aaKnown RBP23.21■■□□□ 1.31
COPS3-212ENST00000539941 QRICH2Q9H0J4 1663 aa23.19■■□□□ 1.3
COPS3-212ENST00000539941 PRKRIP1Q9H875 184 aaPredicted RBP23.19■■□□□ 1.3
COPS3-212ENST00000539941 TRAK1Q9UPV9 953 aa23.19■■□□□ 1.3
COPS3-212ENST00000539941 SETD1AO15047 1707 aaKnown RBP23.18■■□□□ 1.3
COPS3-212ENST00000539941 FBXO41Q8TF61 875 aa23.18■■□□□ 1.3
COPS3-212ENST00000539941 YTHDC2Q9H6S0 1430 aaKnown RBP23.17■■□□□ 1.3
COPS3-212ENST00000539941 NRXN3Q9Y4C0 1643 aa23.17■■□□□ 1.3
COPS3-212ENST00000539941 SLIT1O75093 1534 aa23.16■■□□□ 1.3
COPS3-212ENST00000539941 ARHGAP23Q9P227 1491 aa23.14■■□□□ 1.3
COPS3-212ENST00000539941 CERKQ8TCT0 537 aa23.14■■□□□ 1.29
COPS3-212ENST00000539941 NCKAP5LQ9HCH0 1330 aa23.14■■□□□ 1.29
COPS3-212ENST00000539941 KTN1Q86UP2 1357 aaKnown RBP23.14■■□□□ 1.29
COPS3-212ENST00000539941 DLC1Q96QB1 1528 aa23.13■■□□□ 1.29
COPS3-212ENST00000539941 PUS7Q96PZ0 661 aaKnown RBP23.11■■□□□ 1.29
COPS3-212ENST00000539941 LRPPRCP42704 1394 aaKnown RBP23.11■■□□□ 1.29
COPS3-212ENST00000539941 PLEKHG1Q9ULL1 1385 aa23.11■■□□□ 1.29
COPS3-212ENST00000539941 CEP170BQ9Y4F5 1589 aaPredicted RBP23.11■■□□□ 1.29
COPS3-212ENST00000539941 MYOM1P52179 1685 aa23.11■■□□□ 1.29
COPS3-212ENST00000539941 THEMISQ8N1K5 641 aaPredicted RBP23.1■■□□□ 1.29
COPS3-212ENST00000539941 YTHDC1Q96MU7 727 aaKnown RBP23.09■■□□□ 1.29
COPS3-212ENST00000539941 ZNF142P52746 1687 aaPredicted RBP23.08■■□□□ 1.29
COPS3-212ENST00000539941 PER1O15534 1290 aaPredicted RBP23.08■■□□□ 1.29
COPS3-212ENST00000539941 EID1Q9Y6B2 187 aa23.08■■□□□ 1.29
COPS3-212ENST00000539941 ABCC11Q96J66 1382 aa23.07■■□□□ 1.28
COPS3-212ENST00000539941 PANK3Q9H999 370 aa23.07■■□□□ 1.28
COPS3-212ENST00000539941 EVC2Q86UK5 1308 aa23.06■■□□□ 1.28
COPS3-212ENST00000539941 STK26Q9P289 416 aa23.06■■□□□ 1.28
COPS3-212ENST00000539941 KNDC1Q76NI1 1749 aa23.06■■□□□ 1.28
COPS3-212ENST00000539941 RALBP1Q15311 655 aa23.05■■□□□ 1.28
COPS3-212ENST00000539941 TXNDC2Q86VQ3 553 aa23.05■■□□□ 1.28
COPS3-212ENST00000539941 TULP4Q9NRJ4 1543 aa23.04■■□□□ 1.28
COPS3-212ENST00000539941 TECPR2O15040 1411 aa23.03■■□□□ 1.28
COPS3-212ENST00000539941 LTKP29376 864 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms