RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ANKRD30AQ9BXX3 1397 aa12.63□□□□□ -0.39
NEDD8-207ENST00000533242 FGD6Q6ZV73 1430 aa12.61□□□□□ -0.39
NEDD8-207ENST00000533242 SLC26A8Q96RN1 970 aa12.61□□□□□ -0.39
NEDD8-207ENST00000533242 MSH6P52701 1360 aa12.61□□□□□ -0.39
NEDD8-207ENST00000533242 SETD1AO15047 1707 aaKnown RBP12.61□□□□□ -0.39
NEDD8-207ENST00000533242 GCC2Q8IWJ2 1684 aa12.61□□□□□ -0.39
NEDD8-207ENST00000533242 SLC52A1Q9NWF4 448 aa12.6□□□□□ -0.39
NEDD8-207ENST00000533242 RPRD2Q5VT52 1461 aaKnown RBP12.6□□□□□ -0.39
NEDD8-207ENST00000533242 JCADQ9P266 1359 aa12.59□□□□□ -0.39
NEDD8-207ENST00000533242 ADGRL2O95490 1459 aa12.59□□□□□ -0.39
NEDD8-207ENST00000533242 COL16A1Q07092 1604 aaPredicted RBP12.59□□□□□ -0.39
NEDD8-207ENST00000533242 ZFYVE9O95405 1425 aa12.58□□□□□ -0.4
NEDD8-207ENST00000533242 PLEKHG1Q9ULL1 1385 aa12.58□□□□□ -0.4
NEDD8-207ENST00000533242 RBM33Q96EV2 1170 aaKnown RBP12.58□□□□□ -0.4
NEDD8-207ENST00000533242 TMEM131LA2VDJ0 1609 aa12.58□□□□□ -0.4
NEDD8-207ENST00000533242 SLAIN2Q9P270 581 aa12.57□□□□□ -0.4
NEDD8-207ENST00000533242 NCOA3Q9Y6Q9 1424 aa12.57□□□□□ -0.4
NEDD8-207ENST00000533242 BCANQ96GW7 911 aa12.56□□□□□ -0.4
NEDD8-207ENST00000533242 CHIC2Q9UKJ5 165 aa12.56□□□□□ -0.4
NEDD8-207ENST00000533242 APLP2Q06481 763 aa12.56□□□□□ -0.4
NEDD8-207ENST00000533242 SHPRHQ149N8 1683 aa12.56□□□□□ -0.4
NEDD8-207ENST00000533242 RIMS2Q9UQ26 1411 aa12.56□□□□□ -0.4
NEDD8-207ENST00000533242 DIP2AQ14689 1571 aa12.55□□□□□ -0.4
NEDD8-207ENST00000533242 HDGFP51858 240 aaKnown RBP12.55□□□□□ -0.4
NEDD8-207ENST00000533242 AHDC1Q5TGY3 1603 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-207ENST00000533242 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-207ENST00000533242 UNC13BO14795 1591 aa12.53□□□□□ -0.4
NEDD8-207ENST00000533242 TBX22Q9Y458 520 aa12.53□□□□□ -0.4
NEDD8-207ENST00000533242 SPATA31A6Q5VVP1 1343 aa12.53□□□□□ -0.4
NEDD8-207ENST00000533242 LRP6O75581 1613 aa12.53□□□□□ -0.4
NEDD8-207ENST00000533242 ANKRD50Q9ULJ7 1429 aa12.52□□□□□ -0.4
NEDD8-207ENST00000533242 PPP1R15AO75807 674 aaPredicted RBP12.52□□□□□ -0.41
NEDD8-207ENST00000533242 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.51□□□□□ -0.41
NEDD8-207ENST00000533242 E9PCH4 1651 aa12.51□□□□□ -0.41
NEDD8-207ENST00000533242 PIK3R4Q99570 1358 aa12.51□□□□□ -0.41
NEDD8-207ENST00000533242 ADAMTS13Q76LX8 1427 aa12.5□□□□□ -0.41
NEDD8-207ENST00000533242 TRPM2O94759 1503 aa12.49□□□□□ -0.41
NEDD8-207ENST00000533242 ZNF772Q68DY9 489 aaPredicted RBP12.49□□□□□ -0.41
NEDD8-207ENST00000533242 CADPS2Q86UW7 1296 aa12.49□□□□□ -0.41
NEDD8-207ENST00000533242 IQGAP3Q86VI3 1631 aa12.48□□□□□ -0.41
NEDD8-207ENST00000533242 MEX3CQ5U5Q3 659 aaKnown RBP12.48□□□□□ -0.41
NEDD8-207ENST00000533242 C14orf37Q86TY3 774 aa12.48□□□□□ -0.41
NEDD8-207ENST00000533242 C19orf44Q9H6X5 657 aa12.47□□□□□ -0.41
NEDD8-207ENST00000533242 ATF3P18847 181 aa12.46□□□□□ -0.41
NEDD8-207ENST00000533242 CDK12Q9NYV4 1490 aaPredicted RBP12.46□□□□□ -0.41
NEDD8-207ENST00000533242 UPF1Q92900 1129 aaKnown RBP eCLIP12.46□□□□□ -0.41
NEDD8-207ENST00000533242 NHSL1Q5SYE7 1610 aa12.46□□□□□ -0.42
NEDD8-207ENST00000533242 XRN1Q8IZH2 1706 aaKnown RBP12.46□□□□□ -0.42
NEDD8-207ENST00000533242 CHGAP10645 457 aaKnown RBP12.45□□□□□ -0.42
NEDD8-207ENST00000533242 FAM50AQ14320 339 aaKnown RBP12.45□□□□□ -0.42
NEDD8-207ENST00000533242 DCCP43146 1447 aa12.45□□□□□ -0.42
NEDD8-207ENST00000533242 TRIM52Q96A61 297 aa12.44□□□□□ -0.42
NEDD8-207ENST00000533242 NRXN3Q9Y4C0 1643 aa12.43□□□□□ -0.42
NEDD8-207ENST00000533242 PTPRUQ92729 1446 aa12.43□□□□□ -0.42
NEDD8-207ENST00000533242 ASXL1Q8IXJ9 1541 aa12.43□□□□□ -0.42
NEDD8-207ENST00000533242 SETBP1Q9Y6X0 1596 aa12.43□□□□□ -0.42
NEDD8-207ENST00000533242 RXRBP28702 533 aa12.42□□□□□ -0.42
NEDD8-207ENST00000533242 NUTM2DQ5VT03 806 aaPredicted RBP12.42□□□□□ -0.42
NEDD8-207ENST00000533242 BRINP3Q76B58 766 aa12.42□□□□□ -0.42
NEDD8-207ENST00000533242 AMOTL2Q9Y2J4 779 aa12.42□□□□□ -0.42
NEDD8-207ENST00000533242 SETD5Q9C0A6 1442 aa12.42□□□□□ -0.42
NEDD8-207ENST00000533242 ROCK1Q13464 1354 aa12.42□□□□□ -0.42
NEDD8-207ENST00000533242 SPHKAPQ2M3C7 1700 aa12.41□□□□□ -0.42
NEDD8-207ENST00000533242 MST1RQ04912 1400 aa12.4□□□□□ -0.42
NEDD8-207ENST00000533242 NUTM2BA6NNL0 878 aaPredicted RBP12.39□□□□□ -0.43
NEDD8-207ENST00000533242 NUTM2EB1AL46 878 aaPredicted RBP12.39□□□□□ -0.43
NEDD8-207ENST00000533242 NUTM2AQ8IVF1 878 aaPredicted RBP12.39□□□□□ -0.43
NEDD8-207ENST00000533242 AFF2P51816 1311 aa12.39□□□□□ -0.43
NEDD8-207ENST00000533242 NALCNQ8IZF0 1738 aa12.38□□□□□ -0.43
NEDD8-207ENST00000533242 NUP155O75694 1391 aa12.37□□□□□ -0.43
NEDD8-207ENST00000533242 LAMC1P11047 1609 aa12.37□□□□□ -0.43
NEDD8-207ENST00000533242 LRRC59Q96AG4 307 aaKnown RBP12.36□□□□□ -0.43
NEDD8-207ENST00000533242 ADGRL3Q9HAR2 1447 aa12.36□□□□□ -0.43
NEDD8-207ENST00000533242 PNPLA6Q8IY17 1366 aa12.35□□□□□ -0.43
NEDD8-207ENST00000533242 RGS12O14924 1447 aa12.35□□□□□ -0.43
NEDD8-207ENST00000533242 ZEB1P37275 1124 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-207ENST00000533242 KIF1BO60333 1816 aa12.34□□□□□ -0.43
NEDD8-207ENST00000533242 RBM6P78332 1123 aaKnown RBP12.34□□□□□ -0.43
NEDD8-207ENST00000533242 NEXMIFQ5QGS0 1516 aa12.34□□□□□ -0.43
NEDD8-207ENST00000533242 METP08581 1390 aa12.34□□□□□ -0.43
NEDD8-207ENST00000533242 CLTCL1P53675 1640 aa12.33□□□□□ -0.44
NEDD8-207ENST00000533242 C8orf37Q96NL8 207 aa12.32□□□□□ -0.44
NEDD8-207ENST00000533242 QTRT2Q9H974 415 aaKnown RBP12.32□□□□□ -0.44
NEDD8-207ENST00000533242 ZNF326Q5BKZ1 582 aaKnown RBP12.31□□□□□ -0.44
NEDD8-207ENST00000533242 C1orf167Q5SNV9 1468 aa12.31□□□□□ -0.44
NEDD8-207ENST00000533242 COL22A1Q8NFW1 1626 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-207ENST00000533242 DDX17Q92841 729 aaKnown RBP12.29□□□□□ -0.44
NEDD8-207ENST00000533242 PTCH1Q13635 1447 aa12.29□□□□□ -0.44
NEDD8-207ENST00000533242 NGLY1Q96IV0 654 aa12.28□□□□□ -0.44
NEDD8-207ENST00000533242 MARF1Q9Y4F3 1742 aaKnown RBP12.28□□□□□ -0.44
NEDD8-207ENST00000533242 ATAD2Q6PL18 1390 aa12.28□□□□□ -0.44
NEDD8-207ENST00000533242 PRAG1Q86YV5 1406 aa12.28□□□□□ -0.44
NEDD8-207ENST00000533242 SOS2Q07890 1332 aaPredicted RBP12.27□□□□□ -0.45
NEDD8-207ENST00000533242 ADAMTS2O95450 1211 aa12.26□□□□□ -0.45
NEDD8-207ENST00000533242 ATRNO75882 1429 aa12.25□□□□□ -0.45
NEDD8-207ENST00000533242 ITGAEP38570 1179 aa12.25□□□□□ -0.45
NEDD8-207ENST00000533242 TRPC5Q9UL62 973 aaPredicted RBP12.25□□□□□ -0.45
NEDD8-207ENST00000533242 PPLO60437 1756 aa12.25□□□□□ -0.45
NEDD8-207ENST00000533242 USP21Q9UK80 565 aa12.25□□□□□ -0.45
NEDD8-207ENST00000533242 ROBO2Q9HCK4 1378 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms