RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-208ENST00000528280 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.45□□□□□ -0.1
CHD7-208ENST00000528280 TET3O43151 1660 aa14.45□□□□□ -0.1
CHD7-208ENST00000528280 ACIN1Q9UKV3 1341 aaKnown RBP14.44□□□□□ -0.1
CHD7-208ENST00000528280 PIK3C2BO00750 1634 aa14.43□□□□□ -0.1
CHD7-208ENST00000528280 BCANQ96GW7 911 aa14.42□□□□□ -0.1
CHD7-208ENST00000528280 GCC2Q8IWJ2 1684 aa14.42□□□□□ -0.1
CHD7-208ENST00000528280 CHGAP10645 457 aaKnown RBP14.41□□□□□ -0.1
CHD7-208ENST00000528280 IQGAP3Q86VI3 1631 aa14.41□□□□□ -0.1
CHD7-208ENST00000528280 PPP1R15AO75807 674 aaPredicted RBP14.4□□□□□ -0.1
CHD7-208ENST00000528280 TRIM52Q96A61 297 aa14.4□□□□□ -0.1
CHD7-208ENST00000528280 NAIPQ13075 1403 aa14.4□□□□□ -0.1
CHD7-208ENST00000528280 UPF1Q92900 1129 aaKnown RBP eCLIP14.39□□□□□ -0.11
CHD7-208ENST00000528280 FAM135BQ49AJ0 1406 aa14.39□□□□□ -0.11
CHD7-208ENST00000528280 ADGRB3O60242 1522 aa14.38□□□□□ -0.11
CHD7-208ENST00000528280 KCNA6P17658 529 aa14.38□□□□□ -0.11
CHD7-208ENST00000528280 HFM1A2PYH4 1435 aa14.37□□□□□ -0.11
CHD7-208ENST00000528280 SLC26A8Q96RN1 970 aa14.36□□□□□ -0.11
CHD7-208ENST00000528280 TBX22Q9Y458 520 aa14.36□□□□□ -0.11
CHD7-208ENST00000528280 E9PCH4 1651 aa14.36□□□□□ -0.11
CHD7-208ENST00000528280 RIMS2Q9UQ26 1411 aa14.35□□□□□ -0.11
CHD7-208ENST00000528280 PLEKHG1Q9ULL1 1385 aa14.34□□□□□ -0.11
CHD7-208ENST00000528280 SLC4A1APQ9BWU0 796 aaKnown RBP14.34□□□□□ -0.11
CHD7-208ENST00000528280 ROBO1Q9Y6N7 1651 aa14.33□□□□□ -0.11
CHD7-208ENST00000528280 PROSER2Q86WR7 435 aaPredicted RBP14.33□□□□□ -0.12
CHD7-208ENST00000528280 TMEM131LA2VDJ0 1609 aa14.33□□□□□ -0.12
CHD7-208ENST00000528280 ZFYVE9O95405 1425 aa14.32□□□□□ -0.12
CHD7-208ENST00000528280 ZNF326Q5BKZ1 582 aaKnown RBP14.32□□□□□ -0.12
CHD7-208ENST00000528280 PIK3R4Q99570 1358 aa14.29□□□□□ -0.12
CHD7-208ENST00000528280 RPGRIP1LQ68CZ1 1315 aa14.28□□□□□ -0.12
CHD7-208ENST00000528280 PHLPP1O60346 1717 aa14.27□□□□□ -0.12
CHD7-208ENST00000528280 VGFO15240 615 aaPredicted RBP14.27□□□□□ -0.13
CHD7-208ENST00000528280 NUTM2DQ5VT03 806 aaPredicted RBP14.27□□□□□ -0.13
CHD7-208ENST00000528280 TMEM94Q12767 1356 aa14.26□□□□□ -0.13
CHD7-208ENST00000528280 SRCAPQ6ZRS2 3230 aa14.26□□□□□ -0.13
CHD7-208ENST00000528280 MPHOSPH9Q99550 1183 aa14.26□□□□□ -0.13
CHD7-208ENST00000528280 SPHKAPQ2M3C7 1700 aa14.26□□□□□ -0.13
CHD7-208ENST00000528280 NCOA3Q9Y6Q9 1424 aa14.25□□□□□ -0.13
CHD7-208ENST00000528280 MYO5BQ9ULV0 1848 aa14.25□□□□□ -0.13
CHD7-208ENST00000528280 NKTRP30414 1462 aaKnown RBP14.25□□□□□ -0.13
CHD7-208ENST00000528280 SETD5Q9C0A6 1442 aa14.24□□□□□ -0.13
CHD7-208ENST00000528280 JCADQ9P266 1359 aa14.23□□□□□ -0.13
CHD7-208ENST00000528280 AMOTL2Q9Y2J4 779 aa14.23□□□□□ -0.13
CHD7-208ENST00000528280 TRPM2O94759 1503 aa14.23□□□□□ -0.13
CHD7-208ENST00000528280 MSH6P52701 1360 aa14.22□□□□□ -0.13
CHD7-208ENST00000528280 DIP2AQ14689 1571 aa14.22□□□□□ -0.13
CHD7-208ENST00000528280 HRCP23327 699 aa14.22□□□□□ -0.13
CHD7-208ENST00000528280 ZNF772Q68DY9 489 aaPredicted RBP14.22□□□□□ -0.13
CHD7-208ENST00000528280 C14orf37Q86TY3 774 aa14.22□□□□□ -0.13
CHD7-208ENST00000528280 C19orf44Q9H6X5 657 aa14.21□□□□□ -0.13
CHD7-208ENST00000528280 SLAIN2Q9P270 581 aa14.21□□□□□ -0.13
CHD7-208ENST00000528280 ADAMTS13Q76LX8 1427 aa14.21□□□□□ -0.13
CHD7-208ENST00000528280 CHD2O14647 1828 aaKnown RBP14.2□□□□□ -0.14
CHD7-208ENST00000528280 NWD1Q149M9 1564 aa14.2□□□□□ -0.14
CHD7-208ENST00000528280 KIF1BO60333 1816 aa14.2□□□□□ -0.14
CHD7-208ENST00000528280 ATF3P18847 181 aa14.19□□□□□ -0.14
CHD7-208ENST00000528280 CADPS2Q86UW7 1296 aa14.19□□□□□ -0.14
CHD7-208ENST00000528280 RBM33Q96EV2 1170 aaKnown RBP14.19□□□□□ -0.14
CHD7-208ENST00000528280 COL16A1Q07092 1604 aaPredicted RBP14.19□□□□□ -0.14
CHD7-208ENST00000528280 CDK12Q9NYV4 1490 aaPredicted RBP14.18□□□□□ -0.14
CHD7-208ENST00000528280 CCDC144AA2RUR9 1427 aa14.18□□□□□ -0.14
CHD7-208ENST00000528280 LRP6O75581 1613 aa14.18□□□□□ -0.14
CHD7-208ENST00000528280 CLTCL1P53675 1640 aa14.18□□□□□ -0.14
CHD7-208ENST00000528280 RXRBP28702 533 aa14.17□□□□□ -0.14
CHD7-208ENST00000528280 FOXD1Q16676 465 aa14.17□□□□□ -0.14
CHD7-208ENST00000528280 SPATA31A6Q5VVP1 1343 aa14.16□□□□□ -0.14
CHD7-208ENST00000528280 SETBP1Q9Y6X0 1596 aa14.16□□□□□ -0.14
CHD7-208ENST00000528280 SHPRHQ149N8 1683 aa14.14□□□□□ -0.15
CHD7-208ENST00000528280 ANKRD30BQ9BXX2 1392 aa14.14□□□□□ -0.15
CHD7-208ENST00000528280 RGL3Q3MIN7 710 aa14.14□□□□□ -0.15
CHD7-208ENST00000528280 MEX3CQ5U5Q3 659 aaKnown RBP14.14□□□□□ -0.15
CHD7-208ENST00000528280 NEXMIFQ5QGS0 1516 aa14.14□□□□□ -0.15
CHD7-208ENST00000528280 RAB3GAP2Q9H2M9 1393 aa14.13□□□□□ -0.15
CHD7-208ENST00000528280 METP08581 1390 aa14.12□□□□□ -0.15
CHD7-208ENST00000528280 PTPRUQ92729 1446 aa14.12□□□□□ -0.15
CHD7-208ENST00000528280 STAC3Q96MF2 364 aa14.1□□□□□ -0.15
CHD7-208ENST00000528280 NRXN3Q9Y4C0 1643 aa14.08□□□□□ -0.15
CHD7-208ENST00000528280 DCCP43146 1447 aa14.08□□□□□ -0.15
CHD7-208ENST00000528280 SPATA31E1Q6ZUB1 1445 aa14.08□□□□□ -0.15
CHD7-208ENST00000528280 AHDC1Q5TGY3 1603 aaPredicted RBP14.06□□□□□ -0.16
CHD7-208ENST00000528280 ADGRF5Q8IZF2 1346 aa14.06□□□□□ -0.16
CHD7-208ENST00000528280 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.05□□□□□ -0.16
CHD7-208ENST00000528280 XRN1Q8IZH2 1706 aaKnown RBP14.04□□□□□ -0.16
CHD7-208ENST00000528280 PPLO60437 1756 aa14.04□□□□□ -0.16
CHD7-208ENST00000528280 SIRT1Q96EB6 747 aa14.04□□□□□ -0.16
CHD7-208ENST00000528280 ZRANB1Q9UGI0 708 aa14.04□□□□□ -0.16
CHD7-208ENST00000528280 RGS12O14924 1447 aa14.04□□□□□ -0.16
CHD7-208ENST00000528280 BRINP3Q76B58 766 aa14.03□□□□□ -0.16
CHD7-208ENST00000528280 C14orf93Q9H972 538 aaKnown RBP14.03□□□□□ -0.16
CHD7-208ENST00000528280 AFF2P51816 1311 aa14.03□□□□□ -0.16
CHD7-208ENST00000528280 PTCH1Q13635 1447 aa14.03□□□□□ -0.16
CHD7-208ENST00000528280 PRAG1Q86YV5 1406 aa14.03□□□□□ -0.16
CHD7-208ENST00000528280 ADGRL3Q9HAR2 1447 aa14.02□□□□□ -0.16
CHD7-208ENST00000528280 RBM6P78332 1123 aaKnown RBP14.02□□□□□ -0.17
CHD7-208ENST00000528280 ABCC11Q96J66 1382 aa14.01□□□□□ -0.17
CHD7-208ENST00000528280 LRRC59Q96AG4 307 aaKnown RBP14.01□□□□□ -0.17
CHD7-208ENST00000528280 STK26Q9P289 416 aa14.01□□□□□ -0.17
CHD7-208ENST00000528280 LRPPRCP42704 1394 aaKnown RBP14□□□□□ -0.17
CHD7-208ENST00000528280 DHX57Q6P158 1386 aaKnown RBP14□□□□□ -0.17
CHD7-208ENST00000528280 ROBO2Q9HCK4 1378 aa14□□□□□ -0.17
CHD7-208ENST00000528280 NUTM2BA6NNL0 878 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms