RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 BARGINQ6ZT62 677 aa9.32□□□□□ -0.92
USP48-211ENST00000526044 PNMA3Q9UL41 463 aa9.32□□□□□ -0.92
USP48-211ENST00000526044 PPP1R18Q6NYC8 613 aa9.31□□□□□ -0.92
USP48-211ENST00000526044 NUDT18Q6ZVK8 323 aa9.31□□□□□ -0.92
USP48-211ENST00000526044 NECTIN2Q92692 538 aa9.31□□□□□ -0.92
USP48-211ENST00000526044 MTRQ99707 1265 aa9.31□□□□□ -0.92
USP48-211ENST00000526044 MINK1Q8N4C8 1332 aaPredicted RBP9.31□□□□□ -0.92
USP48-211ENST00000526044 SMAPO00193 183 aa9.3□□□□□ -0.92
USP48-211ENST00000526044 RNF40O75150 1001 aa9.3□□□□□ -0.92
USP48-211ENST00000526044 OATP04181 439 aa9.3□□□□□ -0.92
USP48-211ENST00000526044 MAP2K5Q13163 448 aa9.3□□□□□ -0.92
USP48-211ENST00000526044 KRI1Q8N9T8 703 aaKnown RBP9.3□□□□□ -0.92
USP48-211ENST00000526044 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.3□□□□□ -0.92
USP48-211ENST00000526044 ADGRG1Q9Y653 693 aa9.3□□□□□ -0.92
USP48-211ENST00000526044 C3orf80F5H4A9 247 aa9.29□□□□□ -0.92
USP48-211ENST00000526044 GGCXP38435 758 aa9.29□□□□□ -0.92
USP48-211ENST00000526044 RBM46Q8TBY0 533 aaKnown RBP9.29□□□□□ -0.92
USP48-211ENST00000526044 IRF6O14896 467 aa9.28□□□□□ -0.92
USP48-211ENST00000526044 FAM161AQ3B820 660 aa9.28□□□□□ -0.92
USP48-211ENST00000526044 EYA1Q99502 592 aa9.28□□□□□ -0.92
USP48-211ENST00000526044 LCE2BO14633 110 aa9.25□□□□□ -0.93
USP48-211ENST00000526044 SLC4A3P48751 1232 aa9.25□□□□□ -0.93
USP48-211ENST00000526044 ZNF787Q6DD87 383 aa9.25□□□□□ -0.93
USP48-211ENST00000526044 PXYLP1Q8TE99 480 aa9.25□□□□□ -0.93
USP48-211ENST00000526044 PDZRN3Q9UPQ7 1066 aa9.25□□□□□ -0.93
USP48-211ENST00000526044 METTL3Q86U44 580 aaKnown RBP9.24□□□□□ -0.93
USP48-211ENST00000526044 TPRNQ4KMQ1 711 aa9.23□□□□□ -0.93
USP48-211ENST00000526044 ZNF516Q92618 1163 aa9.23□□□□□ -0.93
USP48-211ENST00000526044 CCDC102AQ96A19 550 aa9.23□□□□□ -0.93
USP48-211ENST00000526044 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.22□□□□□ -0.93
USP48-211ENST00000526044 RCCD1A6NED2 376 aa9.22□□□□□ -0.93
USP48-211ENST00000526044 DNAJB2P25686 324 aa9.22□□□□□ -0.93
USP48-211ENST00000526044 AK7Q96M32 723 aa9.21□□□□□ -0.94
USP48-211ENST00000526044 APLP1P51693 650 aa9.2□□□□□ -0.94
USP48-211ENST00000526044 SLF2Q8IX21 1173 aa9.2□□□□□ -0.94
USP48-211ENST00000526044 TMUB1Q9BVT8 246 aa9.2□□□□□ -0.94
USP48-211ENST00000526044 SLC24A3Q9HC58 644 aa9.2□□□□□ -0.94
USP48-211ENST00000526044 PHOX2BQ99453 314 aa9.19□□□□□ -0.94
USP48-211ENST00000526044 TMEM134Q9H6X4 195 aa9.19□□□□□ -0.94
USP48-211ENST00000526044 COPS2P61201 443 aa9.18□□□□□ -0.94
USP48-211ENST00000526044 PRR14Q9BWN1 585 aa9.18□□□□□ -0.94
USP48-211ENST00000526044 SWT1Q5T5J6 900 aaKnown RBP9.17□□□□□ -0.94
USP48-211ENST00000526044 NKX2-3Q8TAU0 364 aa9.17□□□□□ -0.94
USP48-211ENST00000526044 TRIM66O15016 1216 aa9.15□□□□□ -0.94
USP48-211ENST00000526044 DAXXQ9UER7 740 aaPredicted RBP9.15□□□□□ -0.94
USP48-211ENST00000526044 NLRP7Q8WX94 980 aa9.14□□□□□ -0.95
USP48-211ENST00000526044 ZPR1O75312 459 aa9.13□□□□□ -0.95
USP48-211ENST00000526044 MDM2Q00987 491 aaPredicted RBP9.13□□□□□ -0.95
USP48-211ENST00000526044 AMHR2Q16671 573 aa9.13□□□□□ -0.95
USP48-211ENST00000526044 PRKCSHP14314 528 aaPredicted RBP9.12□□□□□ -0.95
USP48-211ENST00000526044 CLCN1P35523 988 aa9.12□□□□□ -0.95
USP48-211ENST00000526044 PKDCCQ504Y2 493 aa9.12□□□□□ -0.95
USP48-211ENST00000526044 PCDHB3Q9Y5E6 796 aa9.12□□□□□ -0.95
USP48-211ENST00000526044 SLC19A1P41440 591 aa9.11□□□□□ -0.95
USP48-211ENST00000526044 RSPH4AQ5TD94 716 aa9.11□□□□□ -0.95
USP48-211ENST00000526044 ZNF775Q96BV0 537 aaPredicted RBP9.11□□□□□ -0.95
USP48-211ENST00000526044 GPCPD1Q9NPB8 672 aa9.11□□□□□ -0.95
USP48-211ENST00000526044 SULF1Q8IWU6 871 aa9.1□□□□□ -0.95
USP48-211ENST00000526044 PDE4DQ08499 809 aa9.09□□□□□ -0.95
USP48-211ENST00000526044 TTLL12Q14166 644 aaPredicted RBP9.09□□□□□ -0.95
USP48-211ENST00000526044 DDX11L8A8MPP1 907 aa9.08□□□□□ -0.96
USP48-211ENST00000526044 DGAT1O75907 488 aa9.07□□□□□ -0.96
USP48-211ENST00000526044 SLC10A3P09131 477 aa9.06□□□□□ -0.96
USP48-211ENST00000526044 REPIN1Q9BWE0 567 aaKnown RBP9.06□□□□□ -0.96
USP48-211ENST00000526044 RNF223E7ERA6 249 aa9.05□□□□□ -0.96
USP48-211ENST00000526044 ZNF598Q86UK7 904 aaKnown RBP9.05□□□□□ -0.96
USP48-211ENST00000526044 PARP9Q8IXQ6 854 aa9.05□□□□□ -0.96
USP48-211ENST00000526044 RDH13Q8NBN7 331 aa9.05□□□□□ -0.96
USP48-211ENST00000526044 FAM217BQ9NTX9 383 aaPredicted RBP9.05□□□□□ -0.96
USP48-211ENST00000526044 SSTR3P32745 418 aaPredicted RBP9.04□□□□□ -0.96
USP48-211ENST00000526044 KMT5BQ4FZB7 885 aa9.04□□□□□ -0.96
USP48-211ENST00000526044 SPRYD7Q5W111 196 aa9.04□□□□□ -0.96
USP48-211ENST00000526044 BLOC1S3Q6QNY0 202 aa9.04□□□□□ -0.96
USP48-211ENST00000526044 GIGYF2Q6Y7W6 1299 aaKnown RBP9.04□□□□□ -0.96
USP48-211ENST00000526044 ANKLE1Q8NAG6 615 aa9.04□□□□□ -0.96
USP48-211ENST00000526044 CFHP08603 1231 aa9.02□□□□□ -0.97
USP48-211ENST00000526044 CD46P15529 392 aa9.02□□□□□ -0.97
USP48-211ENST00000526044 PRR20EP86478 221 aa9.02□□□□□ -0.97
USP48-211ENST00000526044 PRR20CP86479 221 aa9.02□□□□□ -0.97
USP48-211ENST00000526044 PRR20DP86480 221 aa9.02□□□□□ -0.97
USP48-211ENST00000526044 PRR20BP86481 221 aa9.02□□□□□ -0.97
USP48-211ENST00000526044 PRR20AP86496 221 aa9.02□□□□□ -0.97
USP48-211ENST00000526044 MYT1Q01538 1121 aa9.02□□□□□ -0.97
USP48-211ENST00000526044 GCGRP47871 477 aa9.01□□□□□ -0.97
USP48-211ENST00000526044 TRIM67Q6ZTA4 783 aa9.01□□□□□ -0.97
USP48-211ENST00000526044 FAM187AA6NFU0 413 aa9□□□□□ -0.97
USP48-211ENST00000526044 ZNF697Q5TEC3 545 aa9□□□□□ -0.97
USP48-211ENST00000526044 ACTN4O43707 911 aaKnown RBP8.99□□□□□ -0.97
USP48-211ENST00000526044 TLL1O43897 1013 aa8.98□□□□□ -0.97
USP48-211ENST00000526044 PPEF1O14829 653 aaPredicted RBP8.97□□□□□ -0.97
USP48-211ENST00000526044 S1PR4O95977 384 aa8.97□□□□□ -0.97
USP48-211ENST00000526044 MS4A1P11836 297 aa8.97□□□□□ -0.97
USP48-211ENST00000526044 NEUROD2Q15784 382 aa8.97□□□□□ -0.97
USP48-211ENST00000526044 KDM4CQ9H3R0 1056 aa8.97□□□□□ -0.97
USP48-211ENST00000526044 GPBP1L1Q9HC44 474 aaPredicted RBP8.97□□□□□ -0.97
USP48-211ENST00000526044 NR1I2O75469 434 aa8.96□□□□□ -0.98
USP48-211ENST00000526044 BEGAINQ9BUH8 593 aa8.96□□□□□ -0.98
USP48-211ENST00000526044 TNFRSF10AO00220 468 aa8.95□□□□□ -0.98
USP48-211ENST00000526044 KDM4AO75164 1064 aa8.95□□□□□ -0.98
USP48-211ENST00000526044 BRPF1P55201 1214 aaPredicted RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms