RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 SLIT1O75093 1534 aa23.47■■□□□ 1.35
LSM1-204ENST00000522515 ARHGAP23Q9P227 1491 aa23.47■■□□□ 1.35
LSM1-204ENST00000522515 PPLO60437 1756 aa23.47■■□□□ 1.35
LSM1-204ENST00000522515 TIMELESSQ9UNS1 1208 aa23.47■■□□□ 1.35
LSM1-204ENST00000522515 ZFYVE9O95405 1425 aa23.47■■□□□ 1.35
LSM1-204ENST00000522515 NUTM2DQ5VT03 806 aaPredicted RBP23.46■■□□□ 1.35
LSM1-204ENST00000522515 HSPA2P54652 639 aa23.45■■□□□ 1.34
LSM1-204ENST00000522515 KDM2AQ9Y2K7 1162 aa23.45■■□□□ 1.34
LSM1-204ENST00000522515 LTKP29376 864 aa23.42■■□□□ 1.34
LSM1-204ENST00000522515 AEBP2Q6ZN18 517 aaPredicted RBP23.42■■□□□ 1.34
LSM1-204ENST00000522515 TXNDC2Q86VQ3 553 aa23.41■■□□□ 1.34
LSM1-204ENST00000522515 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.41■■□□□ 1.34
LSM1-204ENST00000522515 VGFO15240 615 aaPredicted RBP23.4■■□□□ 1.34
LSM1-204ENST00000522515 HDGFP51858 240 aaKnown RBP23.4■■□□□ 1.34
LSM1-204ENST00000522515 ADGRF5Q8IZF2 1346 aa23.4■■□□□ 1.34
LSM1-204ENST00000522515 MYOM2P54296 1465 aa23.4■■□□□ 1.34
LSM1-204ENST00000522515 EID1Q9Y6B2 187 aa23.4■■□□□ 1.34
LSM1-204ENST00000522515 STAC3Q96MF2 364 aa23.39■■□□□ 1.33
LSM1-204ENST00000522515 PPP1R15AO75807 674 aaPredicted RBP23.38■■□□□ 1.33
LSM1-204ENST00000522515 ANKLE2Q86XL3 938 aa23.38■■□□□ 1.33
LSM1-204ENST00000522515 SCAF11Q99590 1463 aaKnown RBP23.38■■□□□ 1.33
LSM1-204ENST00000522515 SENP3Q9H4L4 574 aaPredicted RBP23.36■■□□□ 1.33
LSM1-204ENST00000522515 NRXN1Q9ULB1 1477 aa23.36■■□□□ 1.33
LSM1-204ENST00000522515 NCKAP5LQ9HCH0 1330 aa23.35■■□□□ 1.33
LSM1-204ENST00000522515 POLR1AO95602 1720 aaPredicted RBP23.34■■□□□ 1.33
LSM1-204ENST00000522515 NBPF8Q3BBV2 869 aa23.34■■□□□ 1.33
LSM1-204ENST00000522515 PRAG1Q86YV5 1406 aa23.34■■□□□ 1.33
LSM1-204ENST00000522515 PIK3C2GO75747 1445 aa23.33■■□□□ 1.33
LSM1-204ENST00000522515 PLEKHG1Q9ULL1 1385 aa23.32■■□□□ 1.32
LSM1-204ENST00000522515 ZEB1P37275 1124 aaPredicted RBP23.31■■□□□ 1.32
LSM1-204ENST00000522515 STRCQ7RTU9 1775 aa23.29■■□□□ 1.32
LSM1-204ENST00000522515 NRXN3Q9Y4C0 1643 aa23.29■■□□□ 1.32
LSM1-204ENST00000522515 MED14O60244 1454 aa23.29■■□□□ 1.32
LSM1-204ENST00000522515 SETBP1Q9Y6X0 1596 aa23.28■■□□□ 1.32
LSM1-204ENST00000522515 BCANQ96GW7 911 aa23.28■■□□□ 1.32
LSM1-204ENST00000522515 IQGAP1P46940 1657 aa23.28■■□□□ 1.32
LSM1-204ENST00000522515 NPHP4O75161 1426 aaPredicted RBP23.27■■□□□ 1.32
LSM1-204ENST00000522515 CFAP70Q5T0N1 1121 aa23.27■■□□□ 1.32
LSM1-204ENST00000522515 ADAMTS13Q76LX8 1427 aa23.25■■□□□ 1.31
LSM1-204ENST00000522515 C14orf93Q9H972 538 aaKnown RBP23.25■■□□□ 1.31
LSM1-204ENST00000522515 ALKQ9UM73 1620 aa23.25■■□□□ 1.31
LSM1-204ENST00000522515 SLC26A8Q96RN1 970 aa23.24■■□□□ 1.31
LSM1-204ENST00000522515 TRPM1Q7Z4N2 1603 aa23.24■■□□□ 1.31
LSM1-204ENST00000522515 KIAA1210Q9ULL0 1709 aa23.22■■□□□ 1.31
LSM1-204ENST00000522515 NBPF1Q3BBV0 1214 aa23.22■■□□□ 1.31
LSM1-204ENST00000522515 SETD1AO15047 1707 aaKnown RBP23.22■■□□□ 1.31
LSM1-204ENST00000522515 LAMC1P11047 1609 aa23.22■■□□□ 1.31
LSM1-204ENST00000522515 RALGAPBQ86X10 1494 aa23.2■■□□□ 1.3
LSM1-204ENST00000522515 TBX22Q9Y458 520 aa23.19■■□□□ 1.3
LSM1-204ENST00000522515 DIP2AQ14689 1571 aa23.19■■□□□ 1.3
LSM1-204ENST00000522515 TMEM132EQ6IEE7 984 aa23.18■■□□□ 1.3
LSM1-204ENST00000522515 ASXL1Q8IXJ9 1541 aa23.18■■□□□ 1.3
LSM1-204ENST00000522515 METP08581 1390 aa23.17■■□□□ 1.3
LSM1-204ENST00000522515 ADGRB1O14514 1584 aa23.17■■□□□ 1.3
LSM1-204ENST00000522515 ROCK2O75116 1388 aaKnown RBP23.17■■□□□ 1.3
LSM1-204ENST00000522515 GPRASP1Q5JY77 1395 aa23.14■■□□□ 1.29
LSM1-204ENST00000522515 DMRT2Q9Y5R5 561 aa23.13■■□□□ 1.29
LSM1-204ENST00000522515 CARD11Q9BXL7 1154 aa23.11■■□□□ 1.29
LSM1-204ENST00000522515 PTPRUQ92729 1446 aa23.1■■□□□ 1.29
LSM1-204ENST00000522515 YTHDC2Q9H6S0 1430 aaKnown RBP23.1■■□□□ 1.29
LSM1-204ENST00000522515 PIK3R4Q99570 1358 aa23.09■■□□□ 1.29
LSM1-204ENST00000522515 STK26Q9P289 416 aa23.09■■□□□ 1.29
LSM1-204ENST00000522515 CHD2O14647 1828 aaKnown RBP23.07■■□□□ 1.28
LSM1-204ENST00000522515 LRPPRCP42704 1394 aaKnown RBP23.07■■□□□ 1.28
LSM1-204ENST00000522515 AMOTL2Q9Y2J4 779 aa23.06■■□□□ 1.28
LSM1-204ENST00000522515 TRAK1Q9UPV9 953 aa23.06■■□□□ 1.28
LSM1-204ENST00000522515 ABCC11Q96J66 1382 aa23.04■■□□□ 1.28
LSM1-204ENST00000522515 XRN1Q8IZH2 1706 aaKnown RBP23.04■■□□□ 1.28
LSM1-204ENST00000522515 KCNA6P17658 529 aa23.03■■□□□ 1.28
LSM1-204ENST00000522515 TECPR2O15040 1411 aa23.02■■□□□ 1.28
LSM1-204ENST00000522515 NWD1Q149M9 1564 aa23.02■■□□□ 1.27
LSM1-204ENST00000522515 KNDC1Q76NI1 1749 aa23.01■■□□□ 1.27
LSM1-204ENST00000522515 STRCP1A6NGW2 1772 aa23.01■■□□□ 1.27
LSM1-204ENST00000522515 USP47Q96K76 1375 aa23.01■■□□□ 1.27
LSM1-204ENST00000522515 ZNF335Q9H4Z2 1342 aaPredicted RBP23■■□□□ 1.27
LSM1-204ENST00000522515 ARHGEF28Q8N1W1 1705 aaKnown RBP23■■□□□ 1.27
LSM1-204ENST00000522515 CPS1P31327 1500 aa23■■□□□ 1.27
LSM1-204ENST00000522515 ROBO2Q9HCK4 1378 aa22.99■■□□□ 1.27
LSM1-204ENST00000522515 DLC1Q96QB1 1528 aa22.99■■□□□ 1.27
LSM1-204ENST00000522515 PTCH1Q13635 1447 aa22.97■■□□□ 1.27
LSM1-204ENST00000522515 EIF4G2P78344 907 aaKnown RBP eCLIP22.97■■□□□ 1.27
LSM1-204ENST00000522515 WAPLQ7Z5K2 1190 aa22.96■■□□□ 1.27
LSM1-204ENST00000522515 PRAM1Q96QH2 718 aa22.96■■□□□ 1.27
LSM1-204ENST00000522515 EIF3AQ14152 1382 aaKnown RBP22.95■■□□□ 1.27
LSM1-204ENST00000522515 PLEKHH1Q9ULM0 1364 aa22.95■■□□□ 1.27
LSM1-204ENST00000522515 SIRT1Q96EB6 747 aa22.95■■□□□ 1.26
LSM1-204ENST00000522515 FAM135BQ49AJ0 1406 aa22.95■■□□□ 1.26
LSM1-204ENST00000522515 NKTRP30414 1462 aaKnown RBP22.95■■□□□ 1.26
LSM1-204ENST00000522515 ST20-MTHFSA0A0A6YYL1 179 aa22.94■■□□□ 1.26
LSM1-204ENST00000522515 HSPA5P11021 654 aaKnown RBP22.94■■□□□ 1.26
LSM1-204ENST00000522515 SAFB2Q14151 953 aaKnown RBP eCLIP22.93■■□□□ 1.26
LSM1-204ENST00000522515 POGKQ9P215 609 aa22.93■■□□□ 1.26
LSM1-204ENST00000522515 HIRIP3Q9BW71 556 aaPredicted RBP22.93■■□□□ 1.26
LSM1-204ENST00000522515 CENPJQ9HC77 1338 aaPredicted RBP22.93■■□□□ 1.26
LSM1-204ENST00000522515 PROSER2Q86WR7 435 aaPredicted RBP22.91■■□□□ 1.26
LSM1-204ENST00000522515 RBM33Q96EV2 1170 aaKnown RBP22.91■■□□□ 1.26
LSM1-204ENST00000522515 QRICH2Q9H0J4 1663 aa22.89■■□□□ 1.26
LSM1-204ENST00000522515 LTBP4Q8N2S1 1624 aa22.88■■□□□ 1.25
LSM1-204ENST00000522515 TESK2Q96S53 571 aa22.87■■□□□ 1.25
LSM1-204ENST00000522515 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms