RNA–Protein interactions for RNA: ENST00000512683.1

VEGFA-216, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 475 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-216ENST00000512683 STRCP1A6NGW2 1772 aa19.29■□□□□ 0.68
VEGFA-216ENST00000512683 PPP1R15AO75807 674 aaPredicted RBP19.29■□□□□ 0.68
VEGFA-216ENST00000512683 NCOA3Q9Y6Q9 1424 aa19.27■□□□□ 0.68
VEGFA-216ENST00000512683 ADGRB3O60242 1522 aa19.27■□□□□ 0.68
VEGFA-216ENST00000512683 SLAIN2Q9P270 581 aa19.26■□□□□ 0.67
VEGFA-216ENST00000512683 MSH6P52701 1360 aa19.26■□□□□ 0.67
VEGFA-216ENST00000512683 NKTRP30414 1462 aaKnown RBP19.26■□□□□ 0.67
VEGFA-216ENST00000512683 ZFYVE9O95405 1425 aa19.25■□□□□ 0.67
VEGFA-216ENST00000512683 RIMS2Q9UQ26 1411 aa19.25■□□□□ 0.67
VEGFA-216ENST00000512683 SENP3Q9H4L4 574 aaPredicted RBP19.24■□□□□ 0.67
VEGFA-216ENST00000512683 PIK3R4Q99570 1358 aa19.23■□□□□ 0.67
VEGFA-216ENST00000512683 CHGAP10645 457 aaKnown RBP19.21■□□□□ 0.67
VEGFA-216ENST00000512683 NUP155O75694 1391 aa19.2■□□□□ 0.66
VEGFA-216ENST00000512683 C19orf44Q9H6X5 657 aa19.2■□□□□ 0.66
VEGFA-216ENST00000512683 RGS17Q9UGC6 210 aaPredicted RBP19.2■□□□□ 0.66
VEGFA-216ENST00000512683 CADPS2Q86UW7 1296 aa19.19■□□□□ 0.66
VEGFA-216ENST00000512683 RBM33Q96EV2 1170 aaKnown RBP19.19■□□□□ 0.66
VEGFA-216ENST00000512683 NWD1Q149M9 1564 aa19.17■□□□□ 0.66
VEGFA-216ENST00000512683 ATF3P18847 181 aa19.14■□□□□ 0.65
VEGFA-216ENST00000512683 JCADQ9P266 1359 aa19.14■□□□□ 0.65
VEGFA-216ENST00000512683 C14orf37Q86TY3 774 aa19.13■□□□□ 0.65
VEGFA-216ENST00000512683 ADAMTS13Q76LX8 1427 aa19.13■□□□□ 0.65
VEGFA-216ENST00000512683 UNC13BO14795 1591 aa19.13■□□□□ 0.65
VEGFA-216ENST00000512683 TMEM131LA2VDJ0 1609 aa19.13■□□□□ 0.65
VEGFA-216ENST00000512683 AMOTL2Q9Y2J4 779 aa19.12■□□□□ 0.65
VEGFA-216ENST00000512683 ITGAEP38570 1179 aa19.11■□□□□ 0.65
VEGFA-216ENST00000512683 PPARGC1BQ86YN6 1023 aaKnown RBP19.11■□□□□ 0.65
VEGFA-216ENST00000512683 XIRP1Q702N8 1843 aaKnown RBP19.11■□□□□ 0.65
VEGFA-216ENST00000512683 SPATA31A6Q5VVP1 1343 aa19.09■□□□□ 0.65
VEGFA-216ENST00000512683 NUTM2DQ5VT03 806 aaPredicted RBP19.09■□□□□ 0.65
VEGFA-216ENST00000512683 DIP2AQ14689 1571 aa19.08■□□□□ 0.65
VEGFA-216ENST00000512683 POTEAQ6S8J7 498 aa19.08■□□□□ 0.64
VEGFA-216ENST00000512683 GCC2Q8IWJ2 1684 aa19.08■□□□□ 0.64
VEGFA-216ENST00000512683 IQGAP3Q86VI3 1631 aa19.07■□□□□ 0.64
VEGFA-216ENST00000512683 ROBO1Q9Y6N7 1651 aa19.05■□□□□ 0.64
VEGFA-216ENST00000512683 ZNF326Q5BKZ1 582 aaKnown RBP19.04■□□□□ 0.64
VEGFA-216ENST00000512683 CHD2O14647 1828 aaKnown RBP19.04■□□□□ 0.64
VEGFA-216ENST00000512683 DCCP43146 1447 aa19.03■□□□□ 0.64
VEGFA-216ENST00000512683 E9PCH4 1651 aa19.02■□□□□ 0.64
VEGFA-216ENST00000512683 TRPM2O94759 1503 aa19.02■□□□□ 0.64
VEGFA-216ENST00000512683 ZNF772Q68DY9 489 aaPredicted RBP19.02■□□□□ 0.64
VEGFA-216ENST00000512683 VGFO15240 615 aaPredicted RBP19■□□□□ 0.63
VEGFA-216ENST00000512683 BRINP3Q76B58 766 aa19■□□□□ 0.63
VEGFA-216ENST00000512683 PTPRUQ92729 1446 aa19■□□□□ 0.63
VEGFA-216ENST00000512683 RRBP1Q9P2E9 1410 aaKnown RBP18.99■□□□□ 0.63
VEGFA-216ENST00000512683 RPGRIP1LQ68CZ1 1315 aa18.99■□□□□ 0.63
VEGFA-216ENST00000512683 MYO5BQ9ULV0 1848 aa18.98■□□□□ 0.63
VEGFA-216ENST00000512683 MEX3CQ5U5Q3 659 aaKnown RBP18.97■□□□□ 0.63
VEGFA-216ENST00000512683 LRRC59Q96AG4 307 aaKnown RBP18.97■□□□□ 0.63
VEGFA-216ENST00000512683 SETBP1Q9Y6X0 1596 aa18.96■□□□□ 0.63
VEGFA-216ENST00000512683 METP08581 1390 aa18.95■□□□□ 0.62
VEGFA-216ENST00000512683 NAIPQ13075 1403 aa18.94■□□□□ 0.62
VEGFA-216ENST00000512683 AHDC1Q5TGY3 1603 aaPredicted RBP18.94■□□□□ 0.62
VEGFA-216ENST00000512683 SETD5Q9C0A6 1442 aa18.92■□□□□ 0.62
VEGFA-216ENST00000512683 PHLPP1O60346 1717 aa18.92■□□□□ 0.62
VEGFA-216ENST00000512683 TRIM52Q96A61 297 aa18.92■□□□□ 0.62
VEGFA-216ENST00000512683 COL16A1Q07092 1604 aaPredicted RBP18.91■□□□□ 0.62
VEGFA-216ENST00000512683 SLC4A1APQ9BWU0 796 aaKnown RBP18.9■□□□□ 0.62
VEGFA-216ENST00000512683 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.9■□□□□ 0.62
VEGFA-216ENST00000512683 MST1RQ04912 1400 aa18.9■□□□□ 0.62
VEGFA-216ENST00000512683 RXRBP28702 533 aa18.89■□□□□ 0.61
VEGFA-216ENST00000512683 ACIN1Q9UKV3 1341 aaKnown RBP18.89■□□□□ 0.61
VEGFA-216ENST00000512683 HFM1A2PYH4 1435 aa18.89■□□□□ 0.61
VEGFA-216ENST00000512683 ADGRL3Q9HAR2 1447 aa18.89■□□□□ 0.61
VEGFA-216ENST00000512683 LRP6O75581 1613 aa18.85■□□□□ 0.61
VEGFA-216ENST00000512683 NUTM2BA6NNL0 878 aaPredicted RBP18.85■□□□□ 0.61
VEGFA-216ENST00000512683 NUTM2EB1AL46 878 aaPredicted RBP18.85■□□□□ 0.61
VEGFA-216ENST00000512683 NUTM2AQ8IVF1 878 aaPredicted RBP18.85■□□□□ 0.61
VEGFA-216ENST00000512683 NEXMIFQ5QGS0 1516 aa18.84■□□□□ 0.61
VEGFA-216ENST00000512683 PTCH1Q13635 1447 aa18.84■□□□□ 0.61
VEGFA-216ENST00000512683 PRAG1Q86YV5 1406 aa18.84■□□□□ 0.61
VEGFA-216ENST00000512683 NRXN3Q9Y4C0 1643 aa18.84■□□□□ 0.61
VEGFA-216ENST00000512683 ASXL1Q8IXJ9 1541 aa18.84■□□□□ 0.61
VEGFA-216ENST00000512683 SPHKAPQ2M3C7 1700 aa18.83■□□□□ 0.61
VEGFA-216ENST00000512683 XRN1Q8IZH2 1706 aaKnown RBP18.83■□□□□ 0.61
VEGFA-216ENST00000512683 UPF1Q92900 1129 aaKnown RBP eCLIP18.81■□□□□ 0.6
VEGFA-216ENST00000512683 C1orf167Q5SNV9 1468 aa18.81■□□□□ 0.6
VEGFA-216ENST00000512683 CDK12Q9NYV4 1490 aaPredicted RBP18.81■□□□□ 0.6
VEGFA-216ENST00000512683 AFF2P51816 1311 aa18.8■□□□□ 0.6
VEGFA-216ENST00000512683 SOS2Q07890 1332 aaPredicted RBP18.8■□□□□ 0.6
VEGFA-216ENST00000512683 SHPRHQ149N8 1683 aa18.8■□□□□ 0.6
VEGFA-216ENST00000512683 ROBO2Q9HCK4 1378 aa18.8■□□□□ 0.6
VEGFA-216ENST00000512683 CLTCL1P53675 1640 aa18.79■□□□□ 0.6
VEGFA-216ENST00000512683 RBM6P78332 1123 aaKnown RBP18.79■□□□□ 0.6
VEGFA-216ENST00000512683 QTRT2Q9H974 415 aaKnown RBP18.79■□□□□ 0.6
VEGFA-216ENST00000512683 PNPLA6Q8IY17 1366 aa18.78■□□□□ 0.6
VEGFA-216ENST00000512683 ANKRD30BQ9BXX2 1392 aa18.77■□□□□ 0.6
VEGFA-216ENST00000512683 DDX17Q92841 729 aaKnown RBP18.76■□□□□ 0.59
VEGFA-216ENST00000512683 NGLY1Q96IV0 654 aa18.76■□□□□ 0.59
VEGFA-216ENST00000512683 C8orf37Q96NL8 207 aa18.76■□□□□ 0.59
VEGFA-216ENST00000512683 ORAI2Q96SN7 254 aa18.76■□□□□ 0.59
VEGFA-216ENST00000512683 SIRT1Q96EB6 747 aa18.75■□□□□ 0.59
VEGFA-216ENST00000512683 MPHOSPH9Q99550 1183 aa18.75■□□□□ 0.59
VEGFA-216ENST00000512683 CCDC144AA2RUR9 1427 aa18.74■□□□□ 0.59
VEGFA-216ENST00000512683 NPHP3Q7Z494 1330 aa18.74■□□□□ 0.59
VEGFA-216ENST00000512683 FNBP4Q8N3X1 1017 aaPredicted RBP18.73■□□□□ 0.59
VEGFA-216ENST00000512683 LRPPRCP42704 1394 aaKnown RBP18.72■□□□□ 0.59
VEGFA-216ENST00000512683 ABCC11Q96J66 1382 aa18.72■□□□□ 0.59
VEGFA-216ENST00000512683 ESCO1Q5FWF5 840 aa18.71■□□□□ 0.59
VEGFA-216ENST00000512683 ADGRF5Q8IZF2 1346 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms