RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 PPP2R1AP30153 589 aa23.06■■□□□ 1.28
NUP54-205ENST00000507257 SLFN5Q08AF3 891 aa23.06■■□□□ 1.28
NUP54-205ENST00000507257 WDR43Q15061 677 aaKnown RBP eCLIP23.05■■□□□ 1.28
NUP54-205ENST00000507257 JPH4Q96JJ6 628 aa23.05■■□□□ 1.28
NUP54-205ENST00000507257 DNAJC5BQ9UF47 199 aa23.04■■□□□ 1.28
NUP54-205ENST00000507257 ASXL1Q8IXJ9 1541 aa23.04■■□□□ 1.28
NUP54-205ENST00000507257 SLC4A3P48751 1232 aa23.04■■□□□ 1.28
NUP54-205ENST00000507257 NINLQ9Y2I6 1382 aa23.03■■□□□ 1.28
NUP54-205ENST00000507257 NGEFQ8N5V2 710 aa23.03■■□□□ 1.28
NUP54-205ENST00000507257 NKTRP30414 1462 aaKnown RBP23.03■■□□□ 1.28
NUP54-205ENST00000507257 FAM43AQ8N2R8 423 aa23.02■■□□□ 1.28
NUP54-205ENST00000507257 AMER1Q5JTC6 1135 aaPredicted RBP23.02■■□□□ 1.28
NUP54-205ENST00000507257 CDCA8Q53HL2 280 aa23■■□□□ 1.27
NUP54-205ENST00000507257 CHMP7Q8WUX9 453 aaPredicted RBP23■■□□□ 1.27
NUP54-205ENST00000507257 KNSTRNQ9Y448 316 aa23■■□□□ 1.27
NUP54-205ENST00000507257 MADDQ8WXG6 1647 aa23■■□□□ 1.27
NUP54-205ENST00000507257 RGL3Q3MIN7 710 aa23■■□□□ 1.27
NUP54-205ENST00000507257 FRAT2O75474 233 aaPredicted RBP22.99■■□□□ 1.27
NUP54-205ENST00000507257 ZMYM3Q14202 1370 aa22.99■■□□□ 1.27
NUP54-205ENST00000507257 DUOX2Q9NRD8 1548 aa22.98■■□□□ 1.27
NUP54-205ENST00000507257 STAC3Q96MF2 364 aa22.98■■□□□ 1.27
NUP54-205ENST00000507257 MYOM1P52179 1685 aa22.96■■□□□ 1.27
NUP54-205ENST00000507257 SYCP2Q9BX26 1530 aa22.96■■□□□ 1.27
NUP54-205ENST00000507257 SCAPERQ9BY12 1400 aa22.96■■□□□ 1.27
NUP54-205ENST00000507257 MAPK8IP3Q9UPT6 1336 aa22.96■■□□□ 1.27
NUP54-205ENST00000507257 USP19O94966 1318 aa22.95■■□□□ 1.26
NUP54-205ENST00000507257 CGNL1Q0VF96 1302 aa22.94■■□□□ 1.26
NUP54-205ENST00000507257 RSPH6AQ9H0K4 717 aa22.94■■□□□ 1.26
NUP54-205ENST00000507257 SPHKAPQ2M3C7 1700 aa22.94■■□□□ 1.26
NUP54-205ENST00000507257 PDE3AQ14432 1141 aa22.94■■□□□ 1.26
NUP54-205ENST00000507257 UBE2Q2Q8WVN8 375 aa22.94■■□□□ 1.26
NUP54-205ENST00000507257 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.94■■□□□ 1.26
NUP54-205ENST00000507257 E9PSI1 815 aa22.93■■□□□ 1.26
NUP54-205ENST00000507257 SCAF11Q99590 1463 aaKnown RBP22.93■■□□□ 1.26
NUP54-205ENST00000507257 AAMPQ13685 434 aa22.92■■□□□ 1.26
NUP54-205ENST00000507257 KIAA1210Q9ULL0 1709 aa22.91■■□□□ 1.26
NUP54-205ENST00000507257 RGS3P49796 1198 aa22.91■■□□□ 1.26
NUP54-205ENST00000507257 BECN1Q14457 450 aa22.91■■□□□ 1.26
NUP54-205ENST00000507257 NLRP1Q9C000 1473 aa22.9■■□□□ 1.26
NUP54-205ENST00000507257 ERCC6Q03468 1493 aa22.89■■□□□ 1.25
NUP54-205ENST00000507257 TTC37Q6PGP7 1564 aa22.88■■□□□ 1.25
NUP54-205ENST00000507257 CEP152O94986 1710 aa22.88■■□□□ 1.25
NUP54-205ENST00000507257 KDM5AP29375 1690 aaKnown RBP22.87■■□□□ 1.25
NUP54-205ENST00000507257 TRPM2O94759 1503 aa22.86■■□□□ 1.25
NUP54-205ENST00000507257 ARHGAP5Q13017 1502 aa22.86■■□□□ 1.25
NUP54-205ENST00000507257 SLC24A1O60721 1099 aa22.86■■□□□ 1.25
NUP54-205ENST00000507257 NEURL4Q96JN8 1562 aa22.85■■□□□ 1.25
NUP54-205ENST00000507257 L1TD1Q5T7N2 865 aaKnown RBP22.84■■□□□ 1.25
NUP54-205ENST00000507257 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.83■■□□□ 1.245e-6■□□□□ 11
NUP54-205ENST00000507257 IGHDP01880 384 aa22.82■■□□□ 1.24
NUP54-205ENST00000507257 CLUAP1Q96AJ1 413 aa22.82■■□□□ 1.24
NUP54-205ENST00000507257 SPINK5Q9NQ38 1064 aaPredicted RBP22.82■■□□□ 1.24
NUP54-205ENST00000507257 BCAR3O75815 825 aa22.8■■□□□ 1.24
NUP54-205ENST00000507257 ANTXR1Q9H6X2 564 aa22.8■■□□□ 1.24
NUP54-205ENST00000507257 APAF1O14727 1248 aa22.8■■□□□ 1.24
NUP54-205ENST00000507257 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.8■■□□□ 1.24
NUP54-205ENST00000507257 PTPRTO14522 1441 aa22.79■■□□□ 1.24
NUP54-205ENST00000507257 CENPJQ9HC77 1338 aaPredicted RBP22.77■■□□□ 1.24
NUP54-205ENST00000507257 PMFBP1Q8TBY8 1022 aa22.77■■□□□ 1.24
NUP54-205ENST00000507257 POLR3AO14802 1390 aaPredicted RBP22.77■■□□□ 1.24
NUP54-205ENST00000507257 POGKQ9P215 609 aa22.76■■□□□ 1.23
NUP54-205ENST00000507257 CCDC146Q8IYE0 955 aa22.74■■□□□ 1.23
NUP54-205ENST00000507257 TBC1D32Q96NH3 1257 aa22.74■■□□□ 1.23
NUP54-205ENST00000507257 UPF2Q9HAU5 1272 aaKnown RBP22.74■■□□□ 1.23
NUP54-205ENST00000507257 SHROOM2Q13796 1616 aa22.73■■□□□ 1.23
NUP54-205ENST00000507257 SEC24BO95487 1268 aa22.72■■□□□ 1.23
NUP54-205ENST00000507257 FBLN2P98095 1184 aa22.72■■□□□ 1.23
NUP54-205ENST00000507257 DEPDC5O75140 1603 aa22.72■■□□□ 1.23
NUP54-205ENST00000507257 CLTCL1P53675 1640 aa22.72■■□□□ 1.23
NUP54-205ENST00000507257 MYO3AQ8NEV4 1616 aa22.71■■□□□ 1.23
NUP54-205ENST00000507257 NCBP3Q53F19 620 aaKnown RBP22.7■■□□□ 1.22
NUP54-205ENST00000507257 WWC1Q8IX03 1113 aa22.7■■□□□ 1.22
NUP54-205ENST00000507257 SHPRHQ149N8 1683 aa22.7■■□□□ 1.22
NUP54-205ENST00000507257 ERVK-7P63135 1459 aa22.7■■□□□ 1.22
NUP54-205ENST00000507257 TET3O43151 1660 aa22.69■■□□□ 1.22
NUP54-205ENST00000507257 KANK1Q14678 1352 aa22.69■■□□□ 1.22
NUP54-205ENST00000507257 MYOM2P54296 1465 aa22.68■■□□□ 1.22
NUP54-205ENST00000507257 SBNO2Q9Y2G9 1366 aa22.68■■□□□ 1.22
NUP54-205ENST00000507257 EIF5BO60841 1220 aaKnown RBP22.68■■□□□ 1.22
NUP54-205ENST00000507257 PHF23Q9BUL5 403 aaPredicted RBP22.68■■□□□ 1.22
NUP54-205ENST00000507257 IQSEC2Q5JU85 1478 aa22.68■■□□□ 1.22
NUP54-205ENST00000507257 ABCC1P33527 1531 aa22.68■■□□□ 1.22
NUP54-205ENST00000507257 FSD2A1L4K1 749 aa22.67■■□□□ 1.22
NUP54-205ENST00000507257 DMRT2Q9Y5R5 561 aa22.67■■□□□ 1.22
NUP54-205ENST00000507257 COG6Q9Y2V7 657 aa22.67■■□□□ 1.22
NUP54-205ENST00000507257 RTEL1-TNFRSF6BF6WH68 1400 aa22.66■■□□□ 1.22
NUP54-205ENST00000507257 PLCH2O75038 1416 aa22.66■■□□□ 1.22
NUP54-205ENST00000507257 MAP3K4Q9Y6R4 1608 aa22.65■■□□□ 1.22
NUP54-205ENST00000507257 CANXP27824 592 aaKnown RBP22.65■■□□□ 1.22
NUP54-205ENST00000507257 PANK1Q8TE04 598 aa22.65■■□□□ 1.22
NUP54-205ENST00000507257 TBC1D2Q9BYX2 928 aa22.65■■□□□ 1.22
NUP54-205ENST00000507257 RARSP54136 660 aaKnown RBP22.65■■□□□ 1.22
NUP54-205ENST00000507257 SLKQ9H2G2 1235 aaPredicted RBP22.64■■□□□ 1.21
NUP54-205ENST00000507257 RRAGDQ9NQL2 400 aaPredicted RBP22.64■■□□□ 1.21
NUP54-205ENST00000507257 WDR63Q8IWG1 891 aa22.63■■□□□ 1.21
NUP54-205ENST00000507257 VWDEQ8N2E2 1590 aa22.63■■□□□ 1.21
NUP54-205ENST00000507257 CCDC27Q2M243 656 aa22.62■■□□□ 1.21
NUP54-205ENST00000507257 USP32Q8NFA0 1604 aa22.62■■□□□ 1.21
NUP54-205ENST00000507257 ABCA6Q8N139 1617 aa22.61■■□□□ 1.21
NUP54-205ENST00000507257 RWDD1Q9H446 243 aaPredicted RBP22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms