RNA–Protein interactions for RNA: ENST00000506896.1

SNX25-204, Transcript of sorting nexin 25, human

TSL 2

Gene SNX25, Length 518 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNX25-204	ENST00000506896	MPHOSPH9	Q99550	1183 aa		29.47	■■■□□ 2.31
SNX25-204	ENST00000506896	TRPM2	O94759	1503 aa		29.45	■■■□□ 2.3
SNX25-204	ENST00000506896	RIMS2	Q9UQ26	1411 aa		29.43	■■■□□ 2.3
SNX25-204	ENST00000506896	CHGA	P10645	457 aa	Known RBP	29.42	■■■□□ 2.3
SNX25-204	ENST00000506896	HDGF	P51858	240 aa	Known RBP	29.42	■■■□□ 2.3
SNX25-204	ENST00000506896	UBAP1L	F5GYI3	381 aa		29.41	■■■□□ 2.3
SNX25-204	ENST00000506896	TRIM26	Q12899	539 aa	Predicted RBP	29.4	■■■□□ 2.3
SNX25-204	ENST00000506896	LRRC7	Q96NW7	1537 aa		29.4	■■■□□ 2.3
SNX25-204	ENST00000506896	SLC26A8	Q96RN1	970 aa		29.39	■■■□□ 2.3
SNX25-204	ENST00000506896	PLEKHG1	Q9ULL1	1385 aa		29.38	■■■□□ 2.29
SNX25-204	ENST00000506896	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	29.37	■■■□□ 2.29
SNX25-204	ENST00000506896	CLTCL1	P53675	1640 aa		29.34	■■■□□ 2.29
SNX25-204	ENST00000506896	KCNA6	P17658	529 aa		29.33	■■■□□ 2.29
SNX25-204	ENST00000506896	FOXD1	Q16676	465 aa		29.33	■■■□□ 2.29
SNX25-204	ENST00000506896	PPP1R15A	O75807	674 aa	Predicted RBP	29.32	■■■□□ 2.28
SNX25-204	ENST00000506896	TOM1	O60784	492 aa		29.31	■■■□□ 2.28
SNX25-204	ENST00000506896	XIRP1	Q702N8	1843 aa	Known RBP	29.3	■■■□□ 2.28
SNX25-204	ENST00000506896	BCAN	Q96GW7	911 aa		29.3	■■■□□ 2.28
SNX25-204	ENST00000506896	NUTM2D	Q5VT03	806 aa	Predicted RBP	29.29	■■■□□ 2.28
SNX25-204	ENST00000506896	TBX22	Q9Y458	520 aa		29.29	■■■□□ 2.28
SNX25-204	ENST00000506896	ALK	Q9UM73	1620 aa		29.28	■■■□□ 2.28
SNX25-204	ENST00000506896	CCDC144A	A2RUR9	1427 aa		29.28	■■■□□ 2.28
SNX25-204	ENST00000506896	KIF1B	O60333	1816 aa		29.27	■■■□□ 2.28
SNX25-204	ENST00000506896	CHD2	O14647	1828 aa	Known RBP	29.27	■■■□□ 2.28
SNX25-204	ENST00000506896	SENP3	Q9H4L4	574 aa	Predicted RBP	29.26	■■■□□ 2.27
SNX25-204	ENST00000506896	ADAMTS13	Q76LX8	1427 aa		29.25	■■■□□ 2.27
SNX25-204	ENST00000506896	NWD1	Q149M9	1564 aa		29.25	■■■□□ 2.27
SNX25-204	ENST00000506896	ZNF326	Q5BKZ1	582 aa	Known RBP	29.22	■■■□□ 2.27
SNX25-204	ENST00000506896	PIP4K2B	P78356	416 aa		29.19	■■■□□ 2.26
SNX25-204	ENST00000506896	PROSER2	Q86WR7	435 aa	Predicted RBP	29.19	■■■□□ 2.26
SNX25-204	ENST00000506896	DIP2A	Q14689	1571 aa		29.18	■■■□□ 2.26
SNX25-204	ENST00000506896	NKTR	P30414	1462 aa	Known RBP	29.18	■■■□□ 2.26
SNX25-204	ENST00000506896	TMEM94	Q12767	1356 aa		29.18	■■■□□ 2.26
SNX25-204	ENST00000506896	NEXMIF	Q5QGS0	1516 aa		29.18	■■■□□ 2.26
SNX25-204	ENST00000506896	PIK3R4	Q99570	1358 aa		29.16	■■■□□ 2.26
SNX25-204	ENST00000506896	NRXN3	Q9Y4C0	1643 aa		29.16	■■■□□ 2.26
SNX25-204	ENST00000506896	ANKRD30B	Q9BXX2	1392 aa		29.15	■■■□□ 2.26
SNX25-204	ENST00000506896	RPGRIP1L	Q68CZ1	1315 aa		29.15	■■■□□ 2.26
SNX25-204	ENST00000506896	SETBP1	Q9Y6X0	1596 aa		29.14	■■■□□ 2.26
SNX25-204	ENST00000506896	SCAF1	Q9H7N4	1312 aa	Known RBP	29.14	■■■□□ 2.25
SNX25-204	ENST00000506896	RBM33	Q96EV2	1170 aa	Known RBP	29.12	■■■□□ 2.25
SNX25-204	ENST00000506896	SPATA31E1	Q6ZUB1	1445 aa		29.11	■■■□□ 2.25
SNX25-204	ENST00000506896	HSPA1L	P34931	641 aa		29.09	■■■□□ 2.25
SNX25-204	ENST00000506896	VGF	O15240	615 aa	Predicted RBP	29.08	■■■□□ 2.25
SNX25-204	ENST00000506896	PTPRU	Q92729	1446 aa		29.08	■■■□□ 2.25
SNX25-204	ENST00000506896	AMOTL2	Q9Y2J4	779 aa		29.06	■■■□□ 2.24
SNX25-204	ENST00000506896	NCOA3	Q9Y6Q9	1424 aa		29.05	■■■□□ 2.24
SNX25-204	ENST00000506896	PPL	O60437	1756 aa		29.04	■■■□□ 2.24
SNX25-204	ENST00000506896	RGL3	Q3MIN7	710 aa		29.04	■■■□□ 2.24
SNX25-204	ENST00000506896	MET	P08581	1390 aa		29.02	■■■□□ 2.24
SNX25-204	ENST00000506896	FAM135B	Q49AJ0	1406 aa		29	■■■□□ 2.23
SNX25-204	ENST00000506896	MSH6	P52701	1360 aa		29	■■■□□ 2.23
SNX25-204	ENST00000506896	XRN1	Q8IZH2	1706 aa	Known RBP	28.99	■■■□□ 2.23
SNX25-204	ENST00000506896	SETD1A	O15047	1707 aa	Known RBP	28.97	■■■□□ 2.23
SNX25-204	ENST00000506896	IFT172	Q9UG01	1749 aa		28.96	■■■□□ 2.23
SNX25-204	ENST00000506896	DHX57	Q6P158	1386 aa	Known RBP	28.95	■■■□□ 2.22
SNX25-204	ENST00000506896	C19orf44	Q9H6X5	657 aa		28.93	■■■□□ 2.22
SNX25-204	ENST00000506896	SLAIN2	Q9P270	581 aa		28.93	■■■□□ 2.22
SNX25-204	ENST00000506896	PCGF6	Q9BYE7	350 aa		28.92	■■■□□ 2.22
SNX25-204	ENST00000506896	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	28.91	■■■□□ 2.22
SNX25-204	ENST00000506896	ADGRF5	Q8IZF2	1346 aa		28.91	■■■□□ 2.22
SNX25-204	ENST00000506896	MYOM2	P54296	1465 aa		28.9	■■■□□ 2.22
SNX25-204	ENST00000506896	ROBO1	Q9Y6N7	1651 aa		28.89	■■■□□ 2.22
SNX25-204	ENST00000506896	STAC3	Q96MF2	364 aa		28.89	■■■□□ 2.22
SNX25-204	ENST00000506896	C14orf37	Q86TY3	774 aa		28.88	■■■□□ 2.21
SNX25-204	ENST00000506896	DISP3	Q9P2K9	1392 aa		28.88	■■■□□ 2.21
SNX25-204	ENST00000506896	CADPS2	Q86UW7	1296 aa		28.86	■■■□□ 2.21
SNX25-204	ENST00000506896	PIK3C2G	O75747	1445 aa		28.86	■■■□□ 2.21
SNX25-204	ENST00000506896	NRXN1	Q9ULB1	1477 aa		28.85	■■■□□ 2.21
SNX25-204	ENST00000506896	ATF3	P18847	181 aa		28.83	■■■□□ 2.21
SNX25-204	ENST00000506896	PRAG1	Q86YV5	1406 aa		28.83	■■■□□ 2.21
SNX25-204	ENST00000506896	DCC	P43146	1447 aa		28.81	■■■□□ 2.2
SNX25-204	ENST00000506896	PTCH1	Q13635	1447 aa		28.8	■■■□□ 2.2
SNX25-204	ENST00000506896	DCAF11	Q8TEB1	546 aa		28.8	■■■□□ 2.2
SNX25-204	ENST00000506896	ROBO2	Q9HCK4	1378 aa		28.78	■■■□□ 2.2
SNX25-204	ENST00000506896	ADGRL3	Q9HAR2	1447 aa		28.77	■■■□□ 2.2
SNX25-204	ENST00000506896	LAMC1	P11047	1609 aa		28.76	■■■□□ 2.2
SNX25-204	ENST00000506896	MED1	Q15648	1581 aa	Predicted RBP	28.75	■■■□□ 2.19
SNX25-204	ENST00000506896	C14orf93	Q9H972	538 aa	Known RBP	28.75	■■■□□ 2.19
SNX25-204	ENST00000506896	NALCN	Q8IZF0	1738 aa		28.74	■■■□□ 2.19
SNX25-204	ENST00000506896	SIN3A	Q96ST3	1273 aa		28.74	■■■□□ 2.19
SNX25-204	ENST00000506896	KDM2A	Q9Y2K7	1162 aa		28.74	■■■□□ 2.19
SNX25-204	ENST00000506896	MST1R	Q04912	1400 aa		28.71	■■■□□ 2.19
SNX25-204	ENST00000506896	ASXL1	Q8IXJ9	1541 aa		28.71	■■■□□ 2.19
SNX25-204	ENST00000506896	TMEM132E	Q6IEE7	984 aa		28.71	■■■□□ 2.19
SNX25-204	ENST00000506896	PHLPP1	O60346	1717 aa		28.71	■■■□□ 2.19
SNX25-204	ENST00000506896	NEUROD1	Q13562	356 aa		28.7	■■■□□ 2.18
SNX25-204	ENST00000506896	ILDR2	Q71H61	639 aa		28.7	■■■□□ 2.18
SNX25-204	ENST00000506896	BRINP3	Q76B58	766 aa		28.69	■■■□□ 2.18
SNX25-204	ENST00000506896	LRPPRC	P42704	1394 aa	Known RBP	28.69	■■■□□ 2.18
SNX25-204	ENST00000506896	ABCC11	Q96J66	1382 aa		28.69	■■■□□ 2.18
SNX25-204	ENST00000506896	TECPR2	O15040	1411 aa		28.69	■■■□□ 2.18
SNX25-204	ENST00000506896	CFAP70	Q5T0N1	1121 aa		28.68	■■■□□ 2.18
SNX25-204	ENST00000506896	AHDC1	Q5TGY3	1603 aa	Predicted RBP	28.65	■■■□□ 2.18
SNX25-204	ENST00000506896	STK26	Q9P289	416 aa		28.65	■■■□□ 2.18
SNX25-204	ENST00000506896	COL16A1	Q07092	1604 aa	Predicted RBP	28.65	■■■□□ 2.18
SNX25-204	ENST00000506896	KNDC1	Q76NI1	1749 aa		28.64	■■■□□ 2.18
SNX25-204	ENST00000506896	L3MBTL2	Q969R5	705 aa		28.64	■■■□□ 2.18
SNX25-204	ENST00000506896	YTHDC2	Q9H6S0	1430 aa	Known RBP	28.63	■■■□□ 2.17
SNX25-204	ENST00000506896	WAPL	Q7Z5K2	1190 aa		28.62	■■■□□ 2.17

Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms