RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, humanhuman

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-204ENST00000503492 ABCC3O15438 1527 aa30.57■■■□□ 2.48
PCDH1-204ENST00000503492 PARD3Q8TEW0 1356 aa30.56■■■□□ 2.48
PCDH1-204ENST00000503492 GLI2P10070 1586 aa30.56■■■□□ 2.48
PCDH1-204ENST00000503492 ADGRF5Q8IZF2 1346 aa30.56■■■□□ 2.48
PCDH1-204ENST00000503492 PANK3Q9H999 370 aa30.55■■■□□ 2.48
PCDH1-204ENST00000503492 CFAP65Q6ZU64 1925 aaKnown RBP30.54■■■□□ 2.48
PCDH1-204ENST00000503492 ADGRB3O60242 1522 aa30.54■■■□□ 2.48
PCDH1-204ENST00000503492 WASHC2CQ9Y4E1 1318 aa30.54■■■□□ 2.48
PCDH1-204ENST00000503492 CFAP70Q5T0N1 1121 aa30.52■■■□□ 2.48
PCDH1-204ENST00000503492 NRXN1Q9ULB1 1477 aa30.5■■■□□ 2.47
PCDH1-204ENST00000503492 CAMSAP1Q5T5Y3 1602 aa30.5■■■□□ 2.47
PCDH1-204ENST00000503492 LRPPRCP42704 1394 aaKnown RBP30.49■■■□□ 2.47
PCDH1-204ENST00000503492 YEATS2Q9ULM3 1422 aa30.48■■■□□ 2.47
PCDH1-204ENST00000503492 EIF3AQ14152 1382 aaKnown RBP30.47■■■□□ 2.47
PCDH1-204ENST00000503492 CHGAP10645 457 aaKnown RBP30.47■■■□□ 2.47
PCDH1-204ENST00000503492 NLRP13Q86W25 1043 aa30.46■■■□□ 2.47
PCDH1-204ENST00000503492 NOS1P29475 1434 aa30.46■■■□□ 2.47
PCDH1-204ENST00000503492 SIGLEC1Q9BZZ2 1709 aa30.44■■■□□ 2.46
PCDH1-204ENST00000503492 CC2D1BQ5T0F9 858 aaKnown RBP30.44■■■□□ 2.46
PCDH1-204ENST00000503492 CDCA8Q53HL2 280 aa30.42■■■□□ 2.46
PCDH1-204ENST00000503492 DIP2BQ9P265 1576 aa30.42■■■□□ 2.46
PCDH1-204ENST00000503492 FAM69CQ0P6D2 419 aa30.42■■■□□ 2.46
PCDH1-204ENST00000503492 PPLO60437 1756 aa30.41■■■□□ 2.46
PCDH1-204ENST00000503492 SYNMO15061 1565 aa30.39■■■□□ 2.46
PCDH1-204ENST00000503492 IRX6P78412 446 aaPredicted RBP30.39■■■□□ 2.45
PCDH1-204ENST00000503492 SMG6Q86US8 1419 aaKnown RBP30.37■■■□□ 2.45
PCDH1-204ENST00000503492 ZC3H13Q5T200 1668 aaKnown RBP30.36■■■□□ 2.45
PCDH1-204ENST00000503492 PIK3C2BO00750 1634 aa30.36■■■□□ 2.45
PCDH1-204ENST00000503492 MYOM1P52179 1685 aa30.36■■■□□ 2.45
PCDH1-204ENST00000503492 ARHGAP31Q2M1Z3 1444 aa30.36■■■□□ 2.45
PCDH1-204ENST00000503492 PIK3C2GO75747 1445 aa30.35■■■□□ 2.45
PCDH1-204ENST00000503492 SETBP1Q9Y6X0 1596 aa30.34■■■□□ 2.45
PCDH1-204ENST00000503492 SENP3-EIF4A1A0A087X0R7 540 aa30.34■■■□□ 2.45
PCDH1-204ENST00000503492 ZMYM4Q5VZL5 1548 aa30.34■■■□□ 2.45
PCDH1-204ENST00000503492 RPGRIP1LQ68CZ1 1315 aa30.33■■■□□ 2.45
PCDH1-204ENST00000503492 KDM5AP29375 1690 aaKnown RBP30.33■■■□□ 2.45
PCDH1-204ENST00000503492 ERVK-7P63135 1459 aa30.32■■■□□ 2.44
PCDH1-204ENST00000503492 MYO3AQ8NEV4 1616 aa30.31■■■□□ 2.44
PCDH1-204ENST00000503492 KNSTRNQ9Y448 316 aa30.31■■■□□ 2.44
PCDH1-204ENST00000503492 C14orf93Q9H972 538 aaKnown RBP30.3■■■□□ 2.44
PCDH1-204ENST00000503492 TSPOAP1O95153 1857 aa30.3■■■□□ 2.44
PCDH1-204ENST00000503492 NUDCQ9Y266 331 aa30.3■■■□□ 2.44
PCDH1-204ENST00000503492 SLC24A1O60721 1099 aa30.29■■■□□ 2.44
PCDH1-204ENST00000503492 AMER1Q5JTC6 1135 aaPredicted RBP30.28■■■□□ 2.44
PCDH1-204ENST00000503492 ADGRB1O14514 1584 aa30.26■■■□□ 2.44
PCDH1-204ENST00000503492 ERICH6BQ5W0A0 696 aa30.25■■■□□ 2.43
PCDH1-204ENST00000503492 TSHZ2Q9NRE2 1034 aa30.25■■■□□ 2.43
PCDH1-204ENST00000503492 SBNO2Q9Y2G9 1366 aa30.25■■■□□ 2.43
PCDH1-204ENST00000503492 NEXMIFQ5QGS0 1516 aa30.24■■■□□ 2.43
PCDH1-204ENST00000503492 ASXL1Q8IXJ9 1541 aa30.24■■■□□ 2.43
PCDH1-204ENST00000503492 IDI1Q13907 227 aa30.23■■■□□ 2.43
PCDH1-204ENST00000503492 CENPJQ9HC77 1338 aaPredicted RBP30.22■■■□□ 2.43
PCDH1-204ENST00000503492 TRAK1Q9UPV9 953 aa30.21■■■□□ 2.43
PCDH1-204ENST00000503492 TMEM132EQ6IEE7 984 aa30.2■■■□□ 2.43
PCDH1-204ENST00000503492 PREX1Q8TCU6 1659 aa30.2■■■□□ 2.42
PCDH1-204ENST00000503492 NUTM2DQ5VT03 806 aaPredicted RBP30.19■■■□□ 2.42
PCDH1-204ENST00000503492 SLC52A1Q9NWF4 448 aa30.19■■■□□ 2.42
PCDH1-204ENST00000503492 NPC1L1Q9UHC9 1359 aa30.18■■■□□ 2.42
PCDH1-204ENST00000503492 PPP2R1AP30153 589 aa30.18■■■□□ 2.42
PCDH1-204ENST00000503492 INSRP06213 1382 aa30.18■■■□□ 2.42
PCDH1-204ENST00000503492 VGFO15240 615 aaPredicted RBP30.18■■■□□ 2.42
PCDH1-204ENST00000503492 BLMP54132 1417 aaPredicted RBP30.16■■■□□ 2.42
PCDH1-204ENST00000503492 QRICH2Q9H0J4 1663 aa30.15■■■□□ 2.42
PCDH1-204ENST00000503492 REREQ9P2R6 1566 aa30.14■■■□□ 2.42
PCDH1-204ENST00000503492 RNF123Q5XPI4 1314 aa30.13■■■□□ 2.41
PCDH1-204ENST00000503492 PPP4R2Q9NY27 417 aa30.13■■■□□ 2.41
PCDH1-204ENST00000503492 MYO5BQ9ULV0 1848 aa30.12■■■□□ 2.41
PCDH1-204ENST00000503492 SALL2Q9Y467 1007 aaPredicted RBP30.11■■■□□ 2.41
PCDH1-204ENST00000503492 TMEM131LA2VDJ0 1609 aa30.11■■■□□ 2.41
PCDH1-204ENST00000503492 CARD14Q9BXL6 1004 aa30.11■■■□□ 2.41
PCDH1-204ENST00000503492 AGLP35573 1532 aa30.1■■■□□ 2.41
PCDH1-204ENST00000503492 ZFYVE9O95405 1425 aa30.1■■■□□ 2.41
PCDH1-204ENST00000503492 FBXO31Q5XUX0 539 aaPredicted RBP30.1■■■□□ 2.41
PCDH1-204ENST00000503492 ARHGEF28Q8N1W1 1705 aaKnown RBP30.05■■■□□ 2.4
PCDH1-204ENST00000503492 ADAMTS8Q9UP79 889 aa30.05■■■□□ 2.4
PCDH1-204ENST00000503492 KIF13AQ9H1H9 1805 aa30.05■■■□□ 2.4
PCDH1-204ENST00000503492 PDE3BQ13370 1112 aa30.04■■■□□ 2.4
PCDH1-204ENST00000503492 PPP6R1Q9UPN7 881 aa30.03■■■□□ 2.4
PCDH1-204ENST00000503492 CLTCQ00610 1675 aaKnown RBP30■■■□□ 2.39
PCDH1-204ENST00000503492 WDR43Q15061 677 aaKnown RBP eCLIP29.98■■■□□ 2.39
PCDH1-204ENST00000503492 SLC12A5Q9H2X9 1139 aa29.98■■■□□ 2.39
PCDH1-204ENST00000503492 CDCA7LQ96GN5 454 aa29.97■■■□□ 2.39
PCDH1-204ENST00000503492 SENP3Q9H4L4 574 aaPredicted RBP29.96■■■□□ 2.39
PCDH1-204ENST00000503492 TULP4Q9NRJ4 1543 aa29.96■■■□□ 2.39
PCDH1-204ENST00000503492 B4GALNT3Q6L9W6 998 aa29.96■■■□□ 2.39
PCDH1-204ENST00000503492 ARHGEF40Q8TER5 1519 aa29.95■■■□□ 2.38
PCDH1-204ENST00000503492 NSD3Q9BZ95 1437 aa29.94■■■□□ 2.38
PCDH1-204ENST00000503492 EVC2Q86UK5 1308 aa29.93■■■□□ 2.38
PCDH1-204ENST00000503492 MLECQ14165 292 aa29.92■■■□□ 2.38
PCDH1-204ENST00000503492 PUS7Q96PZ0 661 aaKnown RBP29.92■■■□□ 2.38
PCDH1-204ENST00000503492 SPATA31D1Q6ZQQ2 1576 aa29.91■■■□□ 2.38
PCDH1-204ENST00000503492 STK26Q9P289 416 aa29.91■■■□□ 2.38
PCDH1-204ENST00000503492 RCAN3Q9UKA8 241 aa29.9■■■□□ 2.38
PCDH1-204ENST00000503492 STAG3Q9UJ98 1225 aa29.89■■■□□ 2.37
PCDH1-204ENST00000503492 SAFB2Q14151 953 aaKnown RBP eCLIP29.88■■■□□ 2.37
PCDH1-204ENST00000503492 RRP1P56182 461 aaKnown RBP29.86■■■□□ 2.37
PCDH1-204ENST00000503492 PTPRMP28827 1452 aa29.86■■■□□ 2.37
PCDH1-204ENST00000503492 ALKQ9UM73 1620 aa29.85■■■□□ 2.37
PCDH1-204ENST00000503492 PLEKHH1Q9ULM0 1364 aa29.85■■■□□ 2.37
PCDH1-204ENST00000503492 YTHDC2Q9H6S0 1430 aaKnown RBP29.85■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 8540 ms