RNA–Protein interactions for RNA: ENST00000471968.1

HDAC3-206, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-206ENST00000471968 PNPLA6Q8IY17 1366 aa11.33□□□□□ -0.6
HDAC3-206ENST00000471968 ATF3P18847 181 aa11.33□□□□□ -0.6
HDAC3-206ENST00000471968 CADPS2Q86UW7 1296 aa11.33□□□□□ -0.6
HDAC3-206ENST00000471968 ERVK-7P63135 1459 aa11.32□□□□□ -0.6
HDAC3-206ENST00000471968 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.32□□□□□ -0.6
HDAC3-206ENST00000471968 BAG6P46379 1132 aa11.31□□□□□ -0.6
HDAC3-206ENST00000471968 FNBP4Q8N3X1 1017 aaPredicted RBP11.31□□□□□ -0.6
HDAC3-206ENST00000471968 RTEL1-TNFRSF6BF6WH68 1400 aa11.31□□□□□ -0.6
HDAC3-206ENST00000471968 CDC42BPAQ5VT25 1732 aa11.31□□□□□ -0.6
HDAC3-206ENST00000471968 TMEM2Q9UHN6 1383 aa11.3□□□□□ -0.6
HDAC3-206ENST00000471968 CAPN15O75808 1086 aa11.3□□□□□ -0.6
HDAC3-206ENST00000471968 KIAA1107Q9UPP5 1409 aa11.29□□□□□ -0.6
HDAC3-206ENST00000471968 BCANQ96GW7 911 aa11.29□□□□□ -0.6
HDAC3-206ENST00000471968 GJD4Q96KN9 370 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-206ENST00000471968 PPP1R1BQ9UD71 204 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-206ENST00000471968 TET3O43151 1660 aa11.28□□□□□ -0.6
HDAC3-206ENST00000471968 UNC13BO14795 1591 aa11.28□□□□□ -0.6
HDAC3-206ENST00000471968 ASXL1Q8IXJ9 1541 aa11.27□□□□□ -0.61
HDAC3-206ENST00000471968 GIGYF1O75420 1035 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-206ENST00000471968 DDX17Q92841 729 aaKnown RBP11.27□□□□□ -0.61
HDAC3-206ENST00000471968 C19orf44Q9H6X5 657 aa11.27□□□□□ -0.61
HDAC3-206ENST00000471968 GPATCH8Q9UKJ3 1502 aaKnown RBP11.26□□□□□ -0.61
HDAC3-206ENST00000471968 EN1Q05925 392 aaPredicted RBP11.26□□□□□ -0.61
HDAC3-206ENST00000471968 STAG3Q9UJ98 1225 aa11.26□□□□□ -0.61
HDAC3-206ENST00000471968 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.26□□□□□ -0.61
HDAC3-206ENST00000471968 NCOA3Q9Y6Q9 1424 aa11.26□□□□□ -0.61
HDAC3-206ENST00000471968 PLEKHH2Q8IVE3 1493 aa11.25□□□□□ -0.61
HDAC3-206ENST00000471968 MROH1Q8NDA8 1641 aa11.25□□□□□ -0.61
HDAC3-206ENST00000471968 CAMTA1Q9Y6Y1 1673 aa11.25□□□□□ -0.61
HDAC3-206ENST00000471968 NINLQ9Y2I6 1382 aa11.25□□□□□ -0.61
HDAC3-206ENST00000471968 FMN1Q68DA7 1419 aa11.25□□□□□ -0.61
HDAC3-206ENST00000471968 CAMSAP2Q08AD1 1489 aa11.25□□□□□ -0.61
HDAC3-206ENST00000471968 PCDH10Q9P2E7 1040 aa11.24□□□□□ -0.61
HDAC3-206ENST00000471968 CFDP1Q9UEE9 299 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-206ENST00000471968 ARHGAP35Q9NRY4 1499 aa11.23□□□□□ -0.61
HDAC3-206ENST00000471968 PTCH1Q13635 1447 aa11.22□□□□□ -0.61
HDAC3-206ENST00000471968 SEPT12Q8IYM1 358 aa11.2□□□□□ -0.62
HDAC3-206ENST00000471968 LRRIQ1Q96JM4 1722 aa11.2□□□□□ -0.62
HDAC3-206ENST00000471968 RALGAPBQ86X10 1494 aa11.19□□□□□ -0.62
HDAC3-206ENST00000471968 BRWD3Q6RI45 1802 aa11.19□□□□□ -0.62
HDAC3-206ENST00000471968 SPHKAPQ2M3C7 1700 aa11.19□□□□□ -0.62
HDAC3-206ENST00000471968 PIK3C2BO00750 1634 aa11.19□□□□□ -0.62
HDAC3-206ENST00000471968 CFAP65Q6ZU64 1925 aaKnown RBP11.19□□□□□ -0.62
HDAC3-206ENST00000471968 KRT27Q7Z3Y8 459 aa11.18□□□□□ -0.62
HDAC3-206ENST00000471968 CSRNP3Q8WYN3 585 aa11.18□□□□□ -0.62
HDAC3-206ENST00000471968 GLI3P10071 1580 aa11.18□□□□□ -0.62
HDAC3-206ENST00000471968 EFCAB6Q5THR3 1501 aa11.18□□□□□ -0.62
HDAC3-206ENST00000471968 CHD2O14647 1828 aaKnown RBP11.18□□□□□ -0.62
HDAC3-206ENST00000471968 ZNF644Q9H582 1327 aaPredicted RBP11.17□□□□□ -0.62
HDAC3-206ENST00000471968 SPON1Q9HCB6 807 aa11.17□□□□□ -0.62
HDAC3-206ENST00000471968 PPP1R15AO75807 674 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-206ENST00000471968 EZH2Q15910 746 aaKnown RBP11.16□□□□□ -0.62
HDAC3-206ENST00000471968 MST1RQ04912 1400 aa11.16□□□□□ -0.62
HDAC3-206ENST00000471968 MBD5Q9P267 1494 aa11.15□□□□□ -0.62
HDAC3-206ENST00000471968 PRELPP51888 382 aa11.14□□□□□ -0.63
HDAC3-206ENST00000471968 KCNQ2O43526 872 aa11.13□□□□□ -0.63
HDAC3-206ENST00000471968 UNC5CLQ8IV45 518 aa11.13□□□□□ -0.63
HDAC3-206ENST00000471968 DCCP43146 1447 aa11.12□□□□□ -0.63
HDAC3-206ENST00000471968 CCNB3Q8WWL7 1395 aa11.12□□□□□ -0.63
HDAC3-206ENST00000471968 CCDC18Q5T9S5 1454 aa11.12□□□□□ -0.63
HDAC3-206ENST00000471968 IDI1Q13907 227 aa11.11□□□□□ -0.63
HDAC3-206ENST00000471968 A0A0G2JS52 829 aa11.1□□□□□ -0.63
HDAC3-206ENST00000471968 MYT1Q01538 1121 aa11.1□□□□□ -0.63
HDAC3-206ENST00000471968 COL13A1Q5TAT6 717 aaPredicted RBP11.1□□□□□ -0.63
HDAC3-206ENST00000471968 DISP2A7MBM2 1401 aa11.09□□□□□ -0.63
HDAC3-206ENST00000471968 CEP152O94986 1710 aa11.09□□□□□ -0.63
HDAC3-206ENST00000471968 PLEKHG1Q9ULL1 1385 aa11.09□□□□□ -0.63
HDAC3-206ENST00000471968 TBX22Q9Y458 520 aa11.09□□□□□ -0.63
HDAC3-206ENST00000471968 MYOM2P54296 1465 aa11.08□□□□□ -0.64
HDAC3-206ENST00000471968 CHD4Q14839 1912 aa11.08□□□□□ -0.64
HDAC3-206ENST00000471968 HSPA6P17066 643 aa11.08□□□□□ -0.64
HDAC3-206ENST00000471968 CAMKK2Q96RR4 588 aa11.08□□□□□ -0.64
HDAC3-206ENST00000471968 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.08□□□□□ -0.64
HDAC3-206ENST00000471968 SOS2Q07890 1332 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-206ENST00000471968 RGPD1P0DJD0 1748 aa11.07□□□□□ -0.64
HDAC3-206ENST00000471968 FAM182BQ5T319 152 aa11.07□□□□□ -0.64
HDAC3-206ENST00000471968 TNS4Q8IZW8 715 aa11.07□□□□□ -0.64
HDAC3-206ENST00000471968 CCDC9Q9Y3X0 531 aaKnown RBP11.07□□□□□ -0.64
HDAC3-206ENST00000471968 ONECUT3O60422 494 aaPredicted RBP11.06□□□□□ -0.64
HDAC3-206ENST00000471968 NBPF8Q3BBV2 869 aa11.06□□□□□ -0.64
HDAC3-206ENST00000471968 NBPF14Q5TI25 921 aa11.06□□□□□ -0.64
HDAC3-206ENST00000471968 ARHGAP31Q2M1Z3 1444 aa11.06□□□□□ -0.64
HDAC3-206ENST00000471968 CCDC141Q6ZP82 1450 aa11.06□□□□□ -0.64
HDAC3-206ENST00000471968 COL22A1Q8NFW1 1626 aaPredicted RBP11.06□□□□□ -0.64
HDAC3-206ENST00000471968 AMOTL2Q9Y2J4 779 aa11.05□□□□□ -0.64
HDAC3-206ENST00000471968 SLIT2O94813 1529 aa11.04□□□□□ -0.64
HDAC3-206ENST00000471968 ADGRB3O60242 1522 aa11.04□□□□□ -0.64
HDAC3-206ENST00000471968 GOLGB1Q14789 3259 aaKnown RBP11.03□□□□□ -0.64
HDAC3-206ENST00000471968 VPS72Q15906 364 aa11.03□□□□□ -0.64
HDAC3-206ENST00000471968 MARF1Q9Y4F3 1742 aaKnown RBP11.03□□□□□ -0.64
HDAC3-206ENST00000471968 NRKQ7Z2Y5 1582 aa11.03□□□□□ -0.64
HDAC3-206ENST00000471968 MTUS2Q5JR59 1369 aa11.03□□□□□ -0.64
HDAC3-206ENST00000471968 FAM83GA6ND36 823 aa11.02□□□□□ -0.65
HDAC3-206ENST00000471968 TRPM2O94759 1503 aa11.02□□□□□ -0.65
HDAC3-206ENST00000471968 PIK3R4Q99570 1358 aa11.02□□□□□ -0.65
HDAC3-206ENST00000471968 ZFYVE9O95405 1425 aa11.01□□□□□ -0.65
HDAC3-206ENST00000471968 TNS1Q9HBL0 1735 aaKnown RBP11.01□□□□□ -0.65
HDAC3-206ENST00000471968 APBA3O96018 575 aa11.01□□□□□ -0.65
HDAC3-206ENST00000471968 ORAI2Q96SN7 254 aa11.01□□□□□ -0.65
HDAC3-206ENST00000471968 PARD3Q8TEW0 1356 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms