RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 NKTRP30414 1462 aaKnown RBP10.83□□□□□ -0.68
HDAC1-204ENST00000471488 ARHGAP31Q2M1Z3 1444 aa10.83□□□□□ -0.68
HDAC1-204ENST00000471488 MYOM3Q5VTT5 1437 aa10.83□□□□□ -0.68
HDAC1-204ENST00000471488 KANK4Q5T7N3 995 aaPredicted RBP10.82□□□□□ -0.68
HDAC1-204ENST00000471488 AFF2P51816 1311 aa10.82□□□□□ -0.68
HDAC1-204ENST00000471488 COL16A1Q07092 1604 aaPredicted RBP10.81□□□□□ -0.68
HDAC1-204ENST00000471488 C8orf37Q96NL8 207 aa10.81□□□□□ -0.68
HDAC1-204ENST00000471488 TET3O43151 1660 aa10.8□□□□□ -0.68
HDAC1-204ENST00000471488 ERBINQ96RT1 1412 aa10.8□□□□□ -0.68
HDAC1-204ENST00000471488 ADGRB3O60242 1522 aa10.79□□□□□ -0.68
HDAC1-204ENST00000471488 NWD1Q149M9 1564 aa10.79□□□□□ -0.68
HDAC1-204ENST00000471488 HDGFP51858 240 aaKnown RBP10.79□□□□□ -0.68
HDAC1-204ENST00000471488 CADPS2Q86UW7 1296 aa10.79□□□□□ -0.68
HDAC1-204ENST00000471488 KDM5AP29375 1690 aaKnown RBP10.79□□□□□ -0.68
HDAC1-204ENST00000471488 RIMS2Q9UQ26 1411 aa10.78□□□□□ -0.68
HDAC1-204ENST00000471488 QTRT2Q9H974 415 aaKnown RBP10.78□□□□□ -0.68
HDAC1-204ENST00000471488 FGD6Q6ZV73 1430 aa10.77□□□□□ -0.68
HDAC1-204ENST00000471488 APLP2Q06481 763 aa10.77□□□□□ -0.69
HDAC1-204ENST00000471488 SLC52A1Q9NWF4 448 aa10.77□□□□□ -0.69
HDAC1-204ENST00000471488 ABCC5O15440 1437 aa10.76□□□□□ -0.69
HDAC1-204ENST00000471488 ADAMTS2O95450 1211 aa10.76□□□□□ -0.69
HDAC1-204ENST00000471488 C19orf44Q9H6X5 657 aa10.76□□□□□ -0.69
HDAC1-204ENST00000471488 ANKRD30AQ9BXX3 1397 aa10.76□□□□□ -0.69
HDAC1-204ENST00000471488 PLEKHG1Q9ULL1 1385 aa10.76□□□□□ -0.69
HDAC1-204ENST00000471488 CROCC2H7BZ55 1655 aa10.76□□□□□ -0.69
HDAC1-204ENST00000471488 BRINP3Q76B58 766 aa10.75□□□□□ -0.69
HDAC1-204ENST00000471488 DDX17Q92841 729 aaKnown RBP10.75□□□□□ -0.69
HDAC1-204ENST00000471488 SHPRHQ149N8 1683 aa10.75□□□□□ -0.69
HDAC1-204ENST00000471488 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.75□□□□□ -0.69
HDAC1-204ENST00000471488 DAPK1P53355 1430 aa10.75□□□□□ -0.69
HDAC1-204ENST00000471488 VPS8Q8N3P4 1428 aa10.75□□□□□ -0.69
HDAC1-204ENST00000471488 CHD2O14647 1828 aaKnown RBP10.74□□□□□ -0.69
HDAC1-204ENST00000471488 PTPN23Q9H3S7 1636 aa10.74□□□□□ -0.69
HDAC1-204ENST00000471488 GCC2Q8IWJ2 1684 aa10.74□□□□□ -0.69
HDAC1-204ENST00000471488 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.74□□□□□ -0.69
HDAC1-204ENST00000471488 NGLY1Q96IV0 654 aa10.74□□□□□ -0.69
HDAC1-204ENST00000471488 MYO5BQ9ULV0 1848 aa10.74□□□□□ -0.69
HDAC1-204ENST00000471488 RGS12O14924 1447 aa10.74□□□□□ -0.69
HDAC1-204ENST00000471488 RBM6P78332 1123 aaKnown RBP10.73□□□□□ -0.69
HDAC1-204ENST00000471488 FAM50AQ14320 339 aaKnown RBP10.73□□□□□ -0.69
HDAC1-204ENST00000471488 ZRANB1Q9UGI0 708 aa10.73□□□□□ -0.69
HDAC1-204ENST00000471488 AMOTL2Q9Y2J4 779 aa10.73□□□□□ -0.69
HDAC1-204ENST00000471488 TBX22Q9Y458 520 aa10.73□□□□□ -0.69
HDAC1-204ENST00000471488 NOS1P29475 1434 aa10.73□□□□□ -0.69
HDAC1-204ENST00000471488 AHDC1Q5TGY3 1603 aaPredicted RBP10.73□□□□□ -0.69
HDAC1-204ENST00000471488 LOC105371045A0A1W2PR82 267 aa10.72□□□□□ -0.69
HDAC1-204ENST00000471488 FOXD1Q16676 465 aa10.72□□□□□ -0.69
HDAC1-204ENST00000471488 ZFYVE9O95405 1425 aa10.71□□□□□ -0.69
HDAC1-204ENST00000471488 LMTK2Q8IWU2 1503 aa10.71□□□□□ -0.69
HDAC1-204ENST00000471488 LRRC59Q96AG4 307 aaKnown RBP10.71□□□□□ -0.69
HDAC1-204ENST00000471488 CDK12Q9NYV4 1490 aaPredicted RBP10.71□□□□□ -0.69
HDAC1-204ENST00000471488 ATAD2Q6PL18 1390 aa10.7□□□□□ -0.7
HDAC1-204ENST00000471488 ASXL1Q8IXJ9 1541 aa10.69□□□□□ -0.7
HDAC1-204ENST00000471488 NCOA3Q9Y6Q9 1424 aa10.69□□□□□ -0.7
HDAC1-204ENST00000471488 ZNF326Q5BKZ1 582 aaKnown RBP10.69□□□□□ -0.7
HDAC1-204ENST00000471488 USP21Q9UK80 565 aa10.69□□□□□ -0.7
HDAC1-204ENST00000471488 SRCAPQ6ZRS2 3230 aa10.69□□□□□ -0.7
HDAC1-204ENST00000471488 DIP2AQ14689 1571 aa10.68□□□□□ -0.7
HDAC1-204ENST00000471488 TRPM2O94759 1503 aa10.68□□□□□ -0.7
HDAC1-204ENST00000471488 ADAMTS13Q76LX8 1427 aa10.67□□□□□ -0.7
HDAC1-204ENST00000471488 TMEM131LA2VDJ0 1609 aa10.67□□□□□ -0.7
HDAC1-204ENST00000471488 PNPLA6Q8IY17 1366 aa10.66□□□□□ -0.7
HDAC1-204ENST00000471488 PTPRUQ92729 1446 aa10.66□□□□□ -0.7
HDAC1-204ENST00000471488 SETD5Q9C0A6 1442 aa10.66□□□□□ -0.7
HDAC1-204ENST00000471488 ANKRD50Q9ULJ7 1429 aa10.66□□□□□ -0.7
HDAC1-204ENST00000471488 TRPC5Q9UL62 973 aaPredicted RBP10.65□□□□□ -0.7
HDAC1-204ENST00000471488 RPRD2Q5VT52 1461 aaKnown RBP10.65□□□□□ -0.7
HDAC1-204ENST00000471488 MST1RQ04912 1400 aa10.65□□□□□ -0.7
HDAC1-204ENST00000471488 SETBP1Q9Y6X0 1596 aa10.65□□□□□ -0.71
HDAC1-204ENST00000471488 PIK3R4Q99570 1358 aa10.64□□□□□ -0.71
HDAC1-204ENST00000471488 PLEKHG5O94827 1062 aa10.63□□□□□ -0.71
HDAC1-204ENST00000471488 ITGAEP38570 1179 aa10.63□□□□□ -0.71
HDAC1-204ENST00000471488 NHSL1Q5SYE7 1610 aa10.62□□□□□ -0.71
HDAC1-204ENST00000471488 DCCP43146 1447 aa10.62□□□□□ -0.71
HDAC1-204ENST00000471488 ORAI2Q96SN7 254 aa10.61□□□□□ -0.71
HDAC1-204ENST00000471488 UNC13BO14795 1591 aa10.6□□□□□ -0.71
HDAC1-204ENST00000471488 XPCQ01831 940 aaPredicted RBP10.6□□□□□ -0.71
HDAC1-204ENST00000471488 SF3B2Q13435 895 aaKnown RBP10.6□□□□□ -0.71
HDAC1-204ENST00000471488 METP08581 1390 aa10.6□□□□□ -0.71
HDAC1-204ENST00000471488 E9PCH4 1651 aa10.6□□□□□ -0.71
HDAC1-204ENST00000471488 ADGRL3Q9HAR2 1447 aa10.58□□□□□ -0.72
HDAC1-204ENST00000471488 ADGRL2O95490 1459 aa10.58□□□□□ -0.72
HDAC1-204ENST00000471488 NUP155O75694 1391 aa10.58□□□□□ -0.72
HDAC1-204ENST00000471488 A0A0G2JS52 829 aa10.58□□□□□ -0.72
HDAC1-204ENST00000471488 MYT1Q01538 1121 aa10.58□□□□□ -0.72
HDAC1-204ENST00000471488 DEFB132Q7Z7B7 95 aa10.58□□□□□ -0.72
HDAC1-204ENST00000471488 C1orf167Q5SNV9 1468 aa10.57□□□□□ -0.72
HDAC1-204ENST00000471488 NUTM2FA1L443 756 aa10.57□□□□□ -0.72
HDAC1-204ENST00000471488 HAP1P54257 671 aaPredicted RBP10.57□□□□□ -0.72
HDAC1-204ENST00000471488 CCDC125Q86Z20 511 aa10.57□□□□□ -0.72
HDAC1-204ENST00000471488 CCDC9Q9Y3X0 531 aaKnown RBP10.57□□□□□ -0.72
HDAC1-204ENST00000471488 NALCNQ8IZF0 1738 aa10.57□□□□□ -0.72
HDAC1-204ENST00000471488 XRN1Q8IZH2 1706 aaKnown RBP10.57□□□□□ -0.72
HDAC1-204ENST00000471488 PSDA5PKW4 1024 aaPredicted RBP10.56□□□□□ -0.72
HDAC1-204ENST00000471488 ESCO1Q5FWF5 840 aa10.56□□□□□ -0.72
HDAC1-204ENST00000471488 ATRNO75882 1429 aa10.56□□□□□ -0.72
HDAC1-204ENST00000471488 FNBP4Q8N3X1 1017 aaPredicted RBP10.55□□□□□ -0.72
HDAC1-204ENST00000471488 GJD4Q96KN9 370 aaPredicted RBP10.55□□□□□ -0.72
HDAC1-204ENST00000471488 PTCH1Q13635 1447 aa10.55□□□□□ -0.72
HDAC1-204ENST00000471488 NRXN3Q9Y4C0 1643 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms