RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 ASXL2Q76L83 1435 aa20.13■□□□□ 0.81
LMNB1-203ENST00000460265 SMG6Q86US8 1419 aaKnown RBP20.12■□□□□ 0.81
LMNB1-203ENST00000460265 PREX2Q70Z35 1606 aa20.11■□□□□ 0.81
LMNB1-203ENST00000460265 CFAP65Q6ZU64 1925 aaKnown RBP20.11■□□□□ 0.81
LMNB1-203ENST00000460265 KDM5CP41229 1560 aa20.1■□□□□ 0.81
LMNB1-203ENST00000460265 CROCC2H7BZ55 1655 aa20.1■□□□□ 0.81
LMNB1-203ENST00000460265 PDE3BQ13370 1112 aa20.1■□□□□ 0.81
LMNB1-203ENST00000460265 FRAT1Q92837 279 aaPredicted RBP20.09■□□□□ 0.81
LMNB1-203ENST00000460265 GOLGA2Q08379 1002 aa20.09■□□□□ 0.81
LMNB1-203ENST00000460265 CENPJQ9HC77 1338 aaPredicted RBP20.09■□□□□ 0.81
LMNB1-203ENST00000460265 CD109Q6YHK3 1445 aa20.08■□□□□ 0.81
LMNB1-203ENST00000460265 WDR7Q9Y4E6 1490 aa20.08■□□□□ 0.81
LMNB1-203ENST00000460265 PKNOX2Q96KN3 472 aa20.08■□□□□ 0.81
LMNB1-203ENST00000460265 U2SURPO15042 1029 aaKnown RBP20.08■□□□□ 0.8
LMNB1-203ENST00000460265 FAM69CQ0P6D2 419 aa20.08■□□□□ 0.8
LMNB1-203ENST00000460265 CRBNQ96SW2 442 aa20.07■□□□□ 0.8
LMNB1-203ENST00000460265 MYO5CQ9NQX4 1742 aa20.06■□□□□ 0.8
LMNB1-203ENST00000460265 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.06■□□□□ 0.8
LMNB1-203ENST00000460265 SKAP1Q86WV1 359 aa20.06■□□□□ 0.8
LMNB1-203ENST00000460265 DAXXQ9UER7 740 aaPredicted RBP20.06■□□□□ 0.8
LMNB1-203ENST00000460265 BRPF3Q9ULD4 1205 aa20.06■□□□□ 0.8
LMNB1-203ENST00000460265 CABP2Q9NPB3 220 aa20.05■□□□□ 0.8
LMNB1-203ENST00000460265 RGS3P49796 1198 aa20.05■□□□□ 0.8
LMNB1-203ENST00000460265 MINK1Q8N4C8 1332 aaPredicted RBP20.04■□□□□ 0.8
LMNB1-203ENST00000460265 SLC24A1O60721 1099 aa20.03■□□□□ 0.8
LMNB1-203ENST00000460265 U2AF1L5P0DN76 240 aaPredicted RBP20.02■□□□□ 0.8
LMNB1-203ENST00000460265 U2AF1Q01081 240 aaKnown RBP eCLIP20.02■□□□□ 0.8
LMNB1-203ENST00000460265 ZCCHC11Q5TAX3 1644 aaKnown RBP20.02■□□□□ 0.8
LMNB1-203ENST00000460265 STAC3Q96MF2 364 aa20.02■□□□□ 0.8
LMNB1-203ENST00000460265 PARD3Q8TEW0 1356 aa20.02■□□□□ 0.8
LMNB1-203ENST00000460265 VGFO15240 615 aaPredicted RBP20.02■□□□□ 0.8
LMNB1-203ENST00000460265 CFAP53Q96M91 514 aa20.01■□□□□ 0.79
LMNB1-203ENST00000460265 AMER1Q5JTC6 1135 aaPredicted RBP20.01■□□□□ 0.79
LMNB1-203ENST00000460265 C20orf194Q5TEA3 1177 aa19.99■□□□□ 0.79
LMNB1-203ENST00000460265 BCL2L13Q9BXK5 485 aa19.98■□□□□ 0.79
LMNB1-203ENST00000460265 NOS1P29475 1434 aa19.98■□□□□ 0.79
LMNB1-203ENST00000460265 KDM5DQ9BY66 1539 aa19.98■□□□□ 0.79
LMNB1-203ENST00000460265 IDI1Q13907 227 aa19.97■□□□□ 0.79
LMNB1-203ENST00000460265 USP35Q9P2H5 1018 aa19.97■□□□□ 0.79
LMNB1-203ENST00000460265 FBXO31Q5XUX0 539 aaPredicted RBP19.97■□□□□ 0.79
LMNB1-203ENST00000460265 GPRASP1Q5JY77 1395 aa19.96■□□□□ 0.79
LMNB1-203ENST00000460265 MTHFSP49914 203 aa19.96■□□□□ 0.79
LMNB1-203ENST00000460265 SCAF11Q99590 1463 aaKnown RBP19.96■□□□□ 0.79
LMNB1-203ENST00000460265 CARD14Q9BXL6 1004 aa19.95■□□□□ 0.78
LMNB1-203ENST00000460265 GGNBP2Q9H3C7 697 aa19.95■□□□□ 0.78
LMNB1-203ENST00000460265 COL17A1Q9UMD9 1497 aaPredicted RBP19.95■□□□□ 0.78
LMNB1-203ENST00000460265 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.95■□□□□ 0.78
LMNB1-203ENST00000460265 MAST1Q9Y2H9 1570 aa19.94■□□□□ 0.78
LMNB1-203ENST00000460265 UGGT1Q9NYU2 1555 aa19.94■□□□□ 0.78
LMNB1-203ENST00000460265 CLUAP1Q96AJ1 413 aa19.94■□□□□ 0.78
LMNB1-203ENST00000460265 LRPPRCP42704 1394 aaKnown RBP19.94■□□□□ 0.78
LMNB1-203ENST00000460265 ABCC1P33527 1531 aa19.94■□□□□ 0.78
LMNB1-203ENST00000460265 RTEL1-TNFRSF6BF6WH68 1400 aa19.93■□□□□ 0.78
LMNB1-203ENST00000460265 ATP10AO60312 1499 aa19.93■□□□□ 0.78
LMNB1-203ENST00000460265 EVC2Q86UK5 1308 aa19.92■□□□□ 0.78
LMNB1-203ENST00000460265 NUTM2FA1L443 756 aa19.92■□□□□ 0.78
LMNB1-203ENST00000460265 ATP7AQ04656 1500 aa19.92■□□□□ 0.78
LMNB1-203ENST00000460265 BCAR3O75815 825 aa19.92■□□□□ 0.78
LMNB1-203ENST00000460265 GLIPR1L2Q4G1C9 344 aa19.91■□□□□ 0.78
LMNB1-203ENST00000460265 UHRF1BP1LA0JNW5 1464 aa19.91■□□□□ 0.78
LMNB1-203ENST00000460265 CGNL1Q0VF96 1302 aa19.9■□□□□ 0.78
LMNB1-203ENST00000460265 SOX12O15370 315 aa19.89■□□□□ 0.78
LMNB1-203ENST00000460265 PRAM1Q96QH2 718 aa19.88■□□□□ 0.77
LMNB1-203ENST00000460265 GSE1Q14687 1217 aa19.88■□□□□ 0.77
LMNB1-203ENST00000460265 RSPH6AQ9H0K4 717 aa19.87■□□□□ 0.77
LMNB1-203ENST00000460265 PDE4AP27815 886 aa19.87■□□□□ 0.77
LMNB1-203ENST00000460265 C14orf93Q9H972 538 aaKnown RBP19.87■□□□□ 0.77
LMNB1-203ENST00000460265 MAGI2Q86UL8 1455 aa19.87■□□□□ 0.77
LMNB1-203ENST00000460265 TCP11L2Q8N4U5 519 aa19.86■□□□□ 0.77
LMNB1-203ENST00000460265 MAPK8IP3Q9UPT6 1336 aa19.86■□□□□ 0.77
LMNB1-203ENST00000460265 SHROOM2Q13796 1616 aa19.86■□□□□ 0.77
LMNB1-203ENST00000460265 COG6Q9Y2V7 657 aa19.86■□□□□ 0.77
LMNB1-203ENST00000460265 TCERG1O14776 1098 aaKnown RBP19.85■□□□□ 0.77
LMNB1-203ENST00000460265 NSD3Q9BZ95 1437 aa19.85■□□□□ 0.77
LMNB1-203ENST00000460265 ZNF518AQ6AHZ1 1483 aa19.85■□□□□ 0.77
LMNB1-203ENST00000460265 PLEKHG5O94827 1062 aa19.85■□□□□ 0.77
LMNB1-203ENST00000460265 DUSP27Q5VZP5 1158 aa19.85■□□□□ 0.77
LMNB1-203ENST00000460265 SPINK5Q9NQ38 1064 aaPredicted RBP19.84■□□□□ 0.77
LMNB1-203ENST00000460265 PLEKHH1Q9ULM0 1364 aa19.84■□□□□ 0.77
LMNB1-203ENST00000460265 E9PSI1 815 aa19.83■□□□□ 0.77
LMNB1-203ENST00000460265 TRPM1Q7Z4N2 1603 aa19.83■□□□□ 0.76
LMNB1-203ENST00000460265 IQGAP3Q86VI3 1631 aa19.83■□□□□ 0.76
LMNB1-203ENST00000460265 PANK1Q8TE04 598 aa19.82■□□□□ 0.76
LMNB1-203ENST00000460265 CLASP1Q7Z460 1538 aa19.82■□□□□ 0.76
LMNB1-203ENST00000460265 HDGFL2Q7Z4V5 671 aaPredicted RBP19.82■□□□□ 0.76
LMNB1-203ENST00000460265 PLXNC1O60486 1568 aa19.82■□□□□ 0.76
LMNB1-203ENST00000460265 UNC13BO14795 1591 aa19.82■□□□□ 0.76
LMNB1-203ENST00000460265 TERF2IPQ9NYB0 399 aa19.82■□□□□ 0.76
LMNB1-203ENST00000460265 ZFYVE16Q7Z3T8 1539 aa19.81■□□□□ 0.76
LMNB1-203ENST00000460265 FBLN1P23142 703 aa19.81■□□□□ 0.76
LMNB1-203ENST00000460265 SLFN5Q08AF3 891 aa19.81■□□□□ 0.76
LMNB1-203ENST00000460265 WAPLQ7Z5K2 1190 aa19.8■□□□□ 0.76
LMNB1-203ENST00000460265 VSIG10Q8N0Z9 540 aa19.8■□□□□ 0.76
LMNB1-203ENST00000460265 EIF2AK4Q9P2K8 1649 aaKnown RBP19.8■□□□□ 0.76
LMNB1-203ENST00000460265 FTSJ3Q8IY81 847 aaKnown RBP19.8■□□□□ 0.76
LMNB1-203ENST00000460265 DMRT2Q9Y5R5 561 aa19.79■□□□□ 0.76
LMNB1-203ENST00000460265 SLC52A1Q9NWF4 448 aa19.79■□□□□ 0.76
LMNB1-203ENST00000460265 RNF123Q5XPI4 1314 aa19.79■□□□□ 0.76
LMNB1-203ENST00000460265 RUNDC1Q96C34 613 aa19.78■□□□□ 0.76
LMNB1-203ENST00000460265 CABP1Q9NZU7 370 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms