RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MDM2Q00987 491 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-209ENST00000456975 PTGDRQ13258 359 aa6.76□□□□□ -1.33
CCDC88A-209ENST00000456975 SNRKQ9NRH2 765 aa6.76□□□□□ -1.33
CCDC88A-209ENST00000456975 MAGI1Q96QZ7 1491 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-209ENST00000456975 RAD54L2Q9Y4B4 1467 aa6.76□□□□□ -1.33
CCDC88A-209ENST00000456975 DEKP35659 375 aaKnown RBP6.76□□□□□ -1.33
CCDC88A-209ENST00000456975 FBXO31Q5XUX0 539 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-209ENST00000456975 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.76□□□□□ -1.334e-7■■■■□ 24.4
CCDC88A-209ENST00000456975 TMC2Q8TDI7 906 aa6.75□□□□□ -1.33
CCDC88A-209ENST00000456975 BRPF3Q9ULD4 1205 aa6.74□□□□□ -1.33
CCDC88A-209ENST00000456975 ZNF330Q9Y3S2 320 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-209ENST00000456975 SKIV2LQ15477 1246 aaKnown RBP6.74□□□□□ -1.33
CCDC88A-209ENST00000456975 BEGAINQ9BUH8 593 aa6.74□□□□□ -1.33
CCDC88A-209ENST00000456975 GLIPR1L2Q4G1C9 344 aa6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 CHMP7Q8WUX9 453 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 ZRANB1Q9UGI0 708 aa6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 TDRD9Q8NDG6 1382 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 SYNJ2O15056 1496 aa6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 ERCC6L2Q5T890 1561 aa6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 C2orf72A6NCS6 295 aa6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 SSTR3P32745 418 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 FAM161AQ3B820 660 aa6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 TICAM2Q86XR7 235 aa6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 MICALL2Q8IY33 904 aa6.73□□□□□ -1.33
CCDC88A-209ENST00000456975 FBXW7Q969H0 707 aa6.72□□□□□ -1.33
CCDC88A-209ENST00000456975 CDHR5Q9HBB8 845 aa6.72□□□□□ -1.33
CCDC88A-209ENST00000456975 TSPOAP1O95153 1857 aa6.72□□□□□ -1.33
CCDC88A-209ENST00000456975 KDM6BO15054 1643 aa6.72□□□□□ -1.33
CCDC88A-209ENST00000456975 GRIN2BQ13224 1484 aa6.72□□□□□ -1.33
CCDC88A-209ENST00000456975 CARNS1A5YM72 827 aa6.72□□□□□ -1.33
CCDC88A-209ENST00000456975 TMUB1Q9BVT8 246 aa6.72□□□□□ -1.33
CCDC88A-209ENST00000456975 FGD5Q6ZNL6 1462 aa6.71□□□□□ -1.33
CCDC88A-209ENST00000456975 SOGA1O94964 1423 aa6.71□□□□□ -1.34
CCDC88A-209ENST00000456975 PPARGC1BQ86YN6 1023 aaKnown RBP6.71□□□□□ -1.34
CCDC88A-209ENST00000456975 ZNF592Q92610 1267 aa6.71□□□□□ -1.34
CCDC88A-209ENST00000456975 GDPD2Q9HCC8 539 aa6.71□□□□□ -1.34
CCDC88A-209ENST00000456975 GPCPD1Q9NPB8 672 aa6.7□□□□□ -1.34
CCDC88A-209ENST00000456975 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.7□□□□□ -1.34
CCDC88A-209ENST00000456975 CEP170Q5SW79 1584 aa6.69□□□□□ -1.34
CCDC88A-209ENST00000456975 CLCN1P35523 988 aa6.69□□□□□ -1.34
CCDC88A-209ENST00000456975 MS4A3Q96HJ5 214 aa6.69□□□□□ -1.34
CCDC88A-209ENST00000456975 SPDYE5A6NIY4 337 aa6.69□□□□□ -1.34
CCDC88A-209ENST00000456975 POM121CA8CG34 1229 aa6.69□□□□□ -1.34
CCDC88A-209ENST00000456975 MYSM1Q5VVJ2 828 aa6.69□□□□□ -1.34
CCDC88A-209ENST00000456975 NPDC1Q9NQX5 325 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-209ENST00000456975 CALR3Q96L12 384 aaKnown RBP6.68□□□□□ -1.34
CCDC88A-209ENST00000456975 NAP1L2Q9ULW6 460 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-209ENST00000456975 SHROOM2Q13796 1616 aa6.67□□□□□ -1.34
CCDC88A-209ENST00000456975 ABCA5Q8WWZ7 1642 aa6.67□□□□□ -1.34
CCDC88A-209ENST00000456975 DIP2BQ9P265 1576 aa6.67□□□□□ -1.34
CCDC88A-209ENST00000456975 TBC1D12O60347 775 aa6.67□□□□□ -1.34
CCDC88A-209ENST00000456975 RFC5P40937 340 aa6.67□□□□□ -1.34
CCDC88A-209ENST00000456975 TTLL13PA6NNM8 815 aa6.66□□□□□ -1.34
CCDC88A-209ENST00000456975 NCLP19338 710 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-209ENST00000456975 PTGER2P43116 358 aa6.66□□□□□ -1.34
CCDC88A-209ENST00000456975 TMED8Q6PL24 325 aaPredicted RBP6.66□□□□□ -1.34
CCDC88A-209ENST00000456975 KIF3CO14782 793 aa6.66□□□□□ -1.34
CCDC88A-209ENST00000456975 CLSTN1O94985 981 aa6.66□□□□□ -1.34
CCDC88A-209ENST00000456975 NEUROD1Q13562 356 aa6.66□□□□□ -1.34
CCDC88A-209ENST00000456975 MYT1LQ9UL68 1186 aa6.66□□□□□ -1.34
CCDC88A-209ENST00000456975 HECW2Q9P2P5 1572 aa6.66□□□□□ -1.34
CCDC88A-209ENST00000456975 CUX1P39880 1505 aa6.65□□□□□ -1.34
CCDC88A-209ENST00000456975 KDM4FA0A1W2PPD8 638 aa6.65□□□□□ -1.34
CCDC88A-209ENST00000456975 CD44P16070 742 aaKnown RBP6.65□□□□□ -1.34
CCDC88A-209ENST00000456975 RFX1P22670 979 aa6.65□□□□□ -1.34
CCDC88A-209ENST00000456975 ABL2P42684 1182 aa6.65□□□□□ -1.34
CCDC88A-209ENST00000456975 MTMR14Q8NCE2 650 aa6.65□□□□□ -1.34
CCDC88A-209ENST00000456975 GLMNQ92990 594 aa6.65□□□□□ -1.34
CCDC88A-209ENST00000456975 FAM217BQ9NTX9 383 aaPredicted RBP6.65□□□□□ -1.34
CCDC88A-209ENST00000456975 ADAMTS12P58397 1594 aa6.65□□□□□ -1.34
CCDC88A-209ENST00000456975 CLK2P49760 499 aaKnown RBP6.65□□□□□ -1.35
CCDC88A-209ENST00000456975 FXR2P51116 673 aaKnown RBP eCLIP6.65□□□□□ -1.352e-6■■■■□ 20.2
CCDC88A-209ENST00000456975 PRDM10Q9NQV6 1147 aa6.65□□□□□ -1.35
CCDC88A-209ENST00000456975 GRIN2AQ12879 1464 aa6.64□□□□□ -1.35
CCDC88A-209ENST00000456975 EVI5O60447 810 aa6.64□□□□□ -1.35
CCDC88A-209ENST00000456975 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-209ENST00000456975 TSR1Q2NL82 804 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-209ENST00000456975 TEX2Q8IWB9 1127 aa6.64□□□□□ -1.35
CCDC88A-209ENST00000456975 RBM33Q96EV2 1170 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-209ENST00000456975 LIMD1Q9UGP4 676 aa6.64□□□□□ -1.35
CCDC88A-209ENST00000456975 CNPY4Q8N129 248 aa6.63□□□□□ -1.35
CCDC88A-209ENST00000456975 PDCD7Q8N8D1 485 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-209ENST00000456975 TRIM35Q9UPQ4 493 aa6.63□□□□□ -1.35
CCDC88A-209ENST00000456975 ABCC10Q5T3U5 1492 aa6.63□□□□□ -1.35
CCDC88A-209ENST00000456975 PSMD1Q99460 953 aa6.62□□□□□ -1.35
CCDC88A-209ENST00000456975 TBC1D2BQ9UPU7 963 aa6.62□□□□□ -1.35
CCDC88A-209ENST00000456975 MAPKBP1O60336 1514 aa6.62□□□□□ -1.35
CCDC88A-209ENST00000456975 TBC1D2Q9BYX2 928 aa6.62□□□□□ -1.35
CCDC88A-209ENST00000456975 MAP3K7O43318 606 aa6.61□□□□□ -1.35
CCDC88A-209ENST00000456975 TMEM92Q6UXU6 159 aa6.61□□□□□ -1.35
CCDC88A-209ENST00000456975 ADGRL1O94910 1474 aa6.61□□□□□ -1.35
CCDC88A-209ENST00000456975 E9PSI1 815 aa6.61□□□□□ -1.35
CCDC88A-209ENST00000456975 PPP1R15AO75807 674 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-209ENST00000456975 FAM69CQ0P6D2 419 aa6.61□□□□□ -1.35
CCDC88A-209ENST00000456975 CSPP1Q1MSJ5 1256 aa6.61□□□□□ -1.35
CCDC88A-209ENST00000456975 METTL3Q86U44 580 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-209ENST00000456975 IPO4Q8TEX9 1081 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-209ENST00000456975 SECISBP2LQ93073 1101 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-209ENST00000456975 BMP2KQ9NSY1 1161 aaPredicted RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms