RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 HRCP23327 699 aa25.44■■□□□ 1.66
LIME1-202ENST00000444951 SOCS7O14512 581 aa25.43■■□□□ 1.66
LIME1-202ENST00000444951 IQGAP3Q86VI3 1631 aa25.42■■□□□ 1.66
LIME1-202ENST00000444951 MED1Q15648 1581 aaPredicted RBP25.42■■□□□ 1.66
LIME1-202ENST00000444951 SLC4A1APQ9BWU0 796 aaKnown RBP25.41■■□□□ 1.66
LIME1-202ENST00000444951 TET3O43151 1660 aa25.41■■□□□ 1.66
LIME1-202ENST00000444951 MYO5BQ9ULV0 1848 aa25.4■■□□□ 1.66
LIME1-202ENST00000444951 ACIN1Q9UKV3 1341 aaKnown RBP25.39■■□□□ 1.66
LIME1-202ENST00000444951 SENP3Q9H4L4 574 aaPredicted RBP25.39■■□□□ 1.66
LIME1-202ENST00000444951 MPHOSPH9Q99550 1183 aa25.38■■□□□ 1.65
LIME1-202ENST00000444951 RPRD2Q5VT52 1461 aaKnown RBP25.38■■□□□ 1.65
LIME1-202ENST00000444951 SLC26A8Q96RN1 970 aa25.36■■□□□ 1.65
LIME1-202ENST00000444951 SLC52A1Q9NWF4 448 aa25.35■■□□□ 1.65
LIME1-202ENST00000444951 FOXD1Q16676 465 aa25.33■■□□□ 1.65
LIME1-202ENST00000444951 E9PCH4 1651 aa25.32■■□□□ 1.64
LIME1-202ENST00000444951 ZFYVE9O95405 1425 aa25.32■■□□□ 1.64
LIME1-202ENST00000444951 TMEM131LA2VDJ0 1609 aa25.31■■□□□ 1.64
LIME1-202ENST00000444951 RBM33Q96EV2 1170 aaKnown RBP25.3■■□□□ 1.64
LIME1-202ENST00000444951 TMEM94Q12767 1356 aa25.3■■□□□ 1.64
LIME1-202ENST00000444951 KCNA6P17658 529 aa25.29■■□□□ 1.64
LIME1-202ENST00000444951 NWD1Q149M9 1564 aa25.28■■□□□ 1.64
LIME1-202ENST00000444951 RIMS2Q9UQ26 1411 aa25.27■■□□□ 1.64
LIME1-202ENST00000444951 DHX57Q6P158 1386 aaKnown RBP25.26■■□□□ 1.63
LIME1-202ENST00000444951 PLEKHG1Q9ULL1 1385 aa25.24■■□□□ 1.63
LIME1-202ENST00000444951 PROSER2Q86WR7 435 aaPredicted RBP25.22■■□□□ 1.63
LIME1-202ENST00000444951 BCANQ96GW7 911 aa25.22■■□□□ 1.63
LIME1-202ENST00000444951 NKTRP30414 1462 aaKnown RBP25.21■■□□□ 1.63
LIME1-202ENST00000444951 CHD2O14647 1828 aaKnown RBP25.21■■□□□ 1.63
LIME1-202ENST00000444951 CHGAP10645 457 aaKnown RBP25.2■■□□□ 1.62
LIME1-202ENST00000444951 NUTM2DQ5VT03 806 aaPredicted RBP25.19■■□□□ 1.62
LIME1-202ENST00000444951 FAM135BQ49AJ0 1406 aa25.19■■□□□ 1.62
LIME1-202ENST00000444951 PPP1R15AO75807 674 aaPredicted RBP25.18■■□□□ 1.62
LIME1-202ENST00000444951 CCER1Q8TC90 406 aaPredicted RBP25.18■■□□□ 1.62
LIME1-202ENST00000444951 ROBO1Q9Y6N7 1651 aa25.17■■□□□ 1.62
LIME1-202ENST00000444951 SPHKAPQ2M3C7 1700 aa25.15■■□□□ 1.62
LIME1-202ENST00000444951 ADAMTS13Q76LX8 1427 aa25.15■■□□□ 1.62
LIME1-202ENST00000444951 PHF23Q9BUL5 403 aaPredicted RBP25.14■■□□□ 1.62
LIME1-202ENST00000444951 TBX22Q9Y458 520 aa25.11■■□□□ 1.61
LIME1-202ENST00000444951 ANKRD30BQ9BXX2 1392 aa25.1■■□□□ 1.61
LIME1-202ENST00000444951 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.1■■□□□ 1.61
LIME1-202ENST00000444951 MSH6P52701 1360 aa25.09■■□□□ 1.61
LIME1-202ENST00000444951 HDGFP51858 240 aaKnown RBP25.09■■□□□ 1.61
LIME1-202ENST00000444951 TRPM2O94759 1503 aa25.08■■□□□ 1.61
LIME1-202ENST00000444951 DIP2AQ14689 1571 aa25.08■■□□□ 1.61
LIME1-202ENST00000444951 RGS17Q9UGC6 210 aaPredicted RBP25.06■■□□□ 1.6
LIME1-202ENST00000444951 CLTCL1P53675 1640 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 NRXN3Q9Y4C0 1643 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 CCDC144AA2RUR9 1427 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 PTPRUQ92729 1446 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 NEUROD1Q13562 356 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 SIN3AQ96ST3 1273 aa25.05■■□□□ 1.6
LIME1-202ENST00000444951 SLAIN2Q9P270 581 aa25.03■■□□□ 1.6
LIME1-202ENST00000444951 PHLPP1O60346 1717 aa25.01■■□□□ 1.59
LIME1-202ENST00000444951 SIPA1L2Q9P2F8 1722 aaPredicted RBP25■■□□□ 1.59
LIME1-202ENST00000444951 PIK3R4Q99570 1358 aa25■■□□□ 1.59
LIME1-202ENST00000444951 NCOA3Q9Y6Q9 1424 aa24.98■■□□□ 1.59
LIME1-202ENST00000444951 SETBP1Q9Y6X0 1596 aa24.97■■□□□ 1.59
LIME1-202ENST00000444951 XRN1Q8IZH2 1706 aaKnown RBP24.96■■□□□ 1.59
LIME1-202ENST00000444951 AMOTL2Q9Y2J4 779 aa24.96■■□□□ 1.59
LIME1-202ENST00000444951 COL16A1Q07092 1604 aaPredicted RBP24.95■■□□□ 1.58
LIME1-202ENST00000444951 RGL3Q3MIN7 710 aa24.95■■□□□ 1.58
LIME1-202ENST00000444951 C14orf37Q86TY3 774 aa24.95■■□□□ 1.58
LIME1-202ENST00000444951 NEXMIFQ5QGS0 1516 aa24.95■■□□□ 1.58
LIME1-202ENST00000444951 KIF1BO60333 1816 aa24.95■■□□□ 1.58
LIME1-202ENST00000444951 ZNF326Q5BKZ1 582 aaKnown RBP24.94■■□□□ 1.58
LIME1-202ENST00000444951 CLSPNQ9HAW4 1339 aa24.92■■□□□ 1.58
LIME1-202ENST00000444951 METP08581 1390 aa24.92■■□□□ 1.58
LIME1-202ENST00000444951 C19orf44Q9H6X5 657 aa24.91■■□□□ 1.58
LIME1-202ENST00000444951 POTEAQ6S8J7 498 aa24.9■■□□□ 1.58
LIME1-202ENST00000444951 JCADQ9P266 1359 aa24.89■■□□□ 1.57
LIME1-202ENST00000444951 AHDC1Q5TGY3 1603 aaPredicted RBP24.87■■□□□ 1.57
LIME1-202ENST00000444951 ATF3P18847 181 aa24.87■■□□□ 1.57
LIME1-202ENST00000444951 CADPS2Q86UW7 1296 aa24.87■■□□□ 1.57
LIME1-202ENST00000444951 SPATA31E1Q6ZUB1 1445 aa24.86■■□□□ 1.57
LIME1-202ENST00000444951 LRP6O75581 1613 aa24.84■■□□□ 1.57
LIME1-202ENST00000444951 TONSLQ96HA7 1378 aa24.83■■□□□ 1.57
LIME1-202ENST00000444951 BRINP3Q76B58 766 aa24.83■■□□□ 1.57
LIME1-202ENST00000444951 SETD1AO15047 1707 aaKnown RBP24.82■■□□□ 1.56
LIME1-202ENST00000444951 DCCP43146 1447 aa24.82■■□□□ 1.56
LIME1-202ENST00000444951 KDM2AQ9Y2K7 1162 aa24.81■■□□□ 1.56
LIME1-202ENST00000444951 NALCNQ8IZF0 1738 aa24.81■■□□□ 1.56
LIME1-202ENST00000444951 MST1RQ04912 1400 aa24.8■■□□□ 1.56
LIME1-202ENST00000444951 SHPRHQ149N8 1683 aa24.79■■□□□ 1.56
LIME1-202ENST00000444951 DCAF11Q8TEB1 546 aa24.79■■□□□ 1.56
LIME1-202ENST00000444951 L3MBTL2Q969R5 705 aa24.79■■□□□ 1.56
LIME1-202ENST00000444951 ASXL1Q8IXJ9 1541 aa24.79■■□□□ 1.56
LIME1-202ENST00000444951 ADGRL3Q9HAR2 1447 aa24.77■■□□□ 1.56
LIME1-202ENST00000444951 PPLO60437 1756 aa24.75■■□□□ 1.55
LIME1-202ENST00000444951 RPGRIP1LQ68CZ1 1315 aa24.75■■□□□ 1.55
LIME1-202ENST00000444951 NHSL1Q5SYE7 1610 aa24.75■■□□□ 1.55
LIME1-202ENST00000444951 SPATA31A6Q5VVP1 1343 aa24.73■■□□□ 1.55
LIME1-202ENST00000444951 ROBO2Q9HCK4 1378 aa24.72■■□□□ 1.55
LIME1-202ENST00000444951 DDX17Q92841 729 aaKnown RBP24.72■■□□□ 1.55
LIME1-202ENST00000444951 IFT172Q9UG01 1749 aa24.72■■□□□ 1.55
LIME1-202ENST00000444951 VGFO15240 615 aaPredicted RBP24.7■■□□□ 1.54
LIME1-202ENST00000444951 PTCH1Q13635 1447 aa24.69■■□□□ 1.54
LIME1-202ENST00000444951 ADGRF5Q8IZF2 1346 aa24.68■■□□□ 1.54
LIME1-202ENST00000444951 MEX3CQ5U5Q3 659 aaKnown RBP24.67■■□□□ 1.54
LIME1-202ENST00000444951 PRAG1Q86YV5 1406 aa24.66■■□□□ 1.54
LIME1-202ENST00000444951 C1orf167Q5SNV9 1468 aa24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms