RNA–Protein interactions for RNA: ENST00000442971.1

SSXP3-201, Transcript of SSX family pseudogene 3, humanhuman

BASIC

Gene SSXP3, Length 1,300 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSXP3-201ENST00000442971 PRELPP51888 382 aa12.62□□□□□ -0.39
SSXP3-201ENST00000442971 INO80Q9ULG1 1556 aaPredicted RBP12.62□□□□□ -0.39
SSXP3-201ENST00000442971 PRXQ9BXM0 1461 aa12.62□□□□□ -0.39
SSXP3-201ENST00000442971 BRINP3Q76B58 766 aa12.62□□□□□ -0.39
SSXP3-201ENST00000442971 PPP1R1BQ9UD71 204 aaPredicted RBP12.62□□□□□ -0.39
SSXP3-201ENST00000442971 PNPLA6Q8IY17 1366 aa12.61□□□□□ -0.39
SSXP3-201ENST00000442971 HOXD11P31277 338 aaPredicted RBP12.61□□□□□ -0.39
SSXP3-201ENST00000442971 SLC26A8Q96RN1 970 aa12.61□□□□□ -0.39
SSXP3-201ENST00000442971 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.61□□□□□ -0.39
SSXP3-201ENST00000442971 MAST1Q9Y2H9 1570 aa12.6□□□□□ -0.39
SSXP3-201ENST00000442971 CHD4Q14839 1912 aa12.6□□□□□ -0.39
SSXP3-201ENST00000442971 TROQ12816 1431 aaPredicted RBP12.6□□□□□ -0.39
SSXP3-201ENST00000442971 NCBP3Q53F19 620 aaKnown RBP12.6□□□□□ -0.39
SSXP3-201ENST00000442971 CADPS2Q86UW7 1296 aa12.6□□□□□ -0.39
SSXP3-201ENST00000442971 RANGAP1P46060 587 aaPredicted RBP12.59□□□□□ -0.39
SSXP3-201ENST00000442971 GJD4Q96KN9 370 aaPredicted RBP12.59□□□□□ -0.39
SSXP3-201ENST00000442971 CLIP1P30622 1438 aa12.58□□□□□ -0.4
SSXP3-201ENST00000442971 BRWD3Q6RI45 1802 aa12.58□□□□□ -0.4
SSXP3-201ENST00000442971 SUPT5HO00267 1087 aaKnown RBP12.58□□□□□ -0.4
SSXP3-201ENST00000442971 HNRNPMP52272 730 aaKnown RBP eCLIP12.58□□□□□ -0.4
SSXP3-201ENST00000442971 SYCP2Q9BX26 1530 aa12.57□□□□□ -0.4
SSXP3-201ENST00000442971 SPHKAPQ2M3C7 1700 aa12.57□□□□□ -0.4
SSXP3-201ENST00000442971 ATF3P18847 181 aa12.57□□□□□ -0.4
SSXP3-201ENST00000442971 RNF216Q9NWF9 866 aaPredicted RBP12.57□□□□□ -0.4
SSXP3-201ENST00000442971 EN1Q05925 392 aaPredicted RBP12.56□□□□□ -0.4
SSXP3-201ENST00000442971 C14orf37Q86TY3 774 aa12.56□□□□□ -0.4
SSXP3-201ENST00000442971 ZNF777Q9ULD5 760 aaPredicted RBP12.56□□□□□ -0.4
SSXP3-201ENST00000442971 MROH1Q8NDA8 1641 aa12.56□□□□□ -0.4
SSXP3-201ENST00000442971 KIF3BO15066 747 aa12.55□□□□□ -0.4
SSXP3-201ENST00000442971 TET3O43151 1660 aa12.55□□□□□ -0.4
SSXP3-201ENST00000442971 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.55□□□□□ -0.4
SSXP3-201ENST00000442971 NCOA3Q9Y6Q9 1424 aa12.54□□□□□ -0.4
SSXP3-201ENST00000442971 RALGAPBQ86X10 1494 aa12.54□□□□□ -0.4
SSXP3-201ENST00000442971 ATP1B4Q9UN42 357 aaPredicted RBP12.54□□□□□ -0.4
SSXP3-201ENST00000442971 COL13A1Q5TAT6 717 aaPredicted RBP12.53□□□□□ -0.4
SSXP3-201ENST00000442971 C19orf44Q9H6X5 657 aa12.53□□□□□ -0.4
SSXP3-201ENST00000442971 CAMSAP2Q08AD1 1489 aa12.53□□□□□ -0.4
SSXP3-201ENST00000442971 ASXL1Q8IXJ9 1541 aa12.53□□□□□ -0.4
SSXP3-201ENST00000442971 SPON1Q9HCB6 807 aa12.52□□□□□ -0.41
SSXP3-201ENST00000442971 DHX29Q7Z478 1369 aaKnown RBP12.52□□□□□ -0.41
SSXP3-201ENST00000442971 PTCH1Q13635 1447 aa12.52□□□□□ -0.41
SSXP3-201ENST00000442971 ERVK-7P63135 1459 aa12.52□□□□□ -0.41
SSXP3-201ENST00000442971 GPATCH8Q9UKJ3 1502 aaKnown RBP12.51□□□□□ -0.41
SSXP3-201ENST00000442971 ARHGAP35Q9NRY4 1499 aa12.5□□□□□ -0.41
SSXP3-201ENST00000442971 TMEM2Q9UHN6 1383 aa12.5□□□□□ -0.41
SSXP3-201ENST00000442971 CDC42BPAQ5VT25 1732 aa12.5□□□□□ -0.41
SSXP3-201ENST00000442971 HSPA6P17066 643 aa12.49□□□□□ -0.41
SSXP3-201ENST00000442971 TNS4Q8IZW8 715 aa12.49□□□□□ -0.41
SSXP3-201ENST00000442971 GLI3P10071 1580 aa12.48□□□□□ -0.41
SSXP3-201ENST00000442971 CHD2O14647 1828 aaKnown RBP12.48□□□□□ -0.41
SSXP3-201ENST00000442971 KCNQ2O43526 872 aa12.47□□□□□ -0.41
SSXP3-201ENST00000442971 SEPT12Q8IYM1 358 aa12.47□□□□□ -0.41
SSXP3-201ENST00000442971 DDX17Q92841 729 aaKnown RBP12.47□□□□□ -0.41
SSXP3-201ENST00000442971 CFAP65Q6ZU64 1925 aaKnown RBP12.47□□□□□ -0.41
SSXP3-201ENST00000442971 KRT27Q7Z3Y8 459 aa12.46□□□□□ -0.41
SSXP3-201ENST00000442971 KIAA1107Q9UPP5 1409 aa12.45□□□□□ -0.42
SSXP3-201ENST00000442971 EZH2Q15910 746 aaKnown RBP12.44□□□□□ -0.42
SSXP3-201ENST00000442971 BCANQ96GW7 911 aa12.43□□□□□ -0.42
SSXP3-201ENST00000442971 RGPD1P0DJD0 1748 aa12.43□□□□□ -0.42
SSXP3-201ENST00000442971 DISP2A7MBM2 1401 aa12.42□□□□□ -0.42
SSXP3-201ENST00000442971 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.41□□□□□ -0.42
SSXP3-201ENST00000442971 PLEKHH2Q8IVE3 1493 aa12.41□□□□□ -0.42
SSXP3-201ENST00000442971 STAG3Q9UJ98 1225 aa12.4□□□□□ -0.42
SSXP3-201ENST00000442971 PPP1R15AO75807 674 aaPredicted RBP12.39□□□□□ -0.43
SSXP3-201ENST00000442971 PIK3C2BO00750 1634 aa12.39□□□□□ -0.43
SSXP3-201ENST00000442971 UNC5CLQ8IV45 518 aa12.38□□□□□ -0.43
SSXP3-201ENST00000442971 CAMKK2Q96RR4 588 aa12.38□□□□□ -0.43
SSXP3-201ENST00000442971 MST1RQ04912 1400 aa12.38□□□□□ -0.43
SSXP3-201ENST00000442971 MARF1Q9Y4F3 1742 aaKnown RBP12.38□□□□□ -0.43
SSXP3-201ENST00000442971 FAM83GA6ND36 823 aa12.37□□□□□ -0.43
SSXP3-201ENST00000442971 DCCP43146 1447 aa12.37□□□□□ -0.43
SSXP3-201ENST00000442971 ONECUT3O60422 494 aaPredicted RBP12.37□□□□□ -0.43
SSXP3-201ENST00000442971 EFCAB6Q5THR3 1501 aa12.36□□□□□ -0.43
SSXP3-201ENST00000442971 NBPF8Q3BBV2 869 aa12.36□□□□□ -0.43
SSXP3-201ENST00000442971 NBPF14Q5TI25 921 aa12.36□□□□□ -0.43
SSXP3-201ENST00000442971 SHANK3Q9BYB0 1731 aa12.35□□□□□ -0.43
SSXP3-201ENST00000442971 TNS1Q9HBL0 1735 aaKnown RBP12.35□□□□□ -0.43
SSXP3-201ENST00000442971 COL22A1Q8NFW1 1626 aaPredicted RBP12.34□□□□□ -0.43
SSXP3-201ENST00000442971 LRRIQ1Q96JM4 1722 aa12.33□□□□□ -0.44
SSXP3-201ENST00000442971 NRKQ7Z2Y5 1582 aa12.33□□□□□ -0.44
SSXP3-201ENST00000442971 FMN1Q68DA7 1419 aa12.33□□□□□ -0.44
SSXP3-201ENST00000442971 MYOM2P54296 1465 aa12.33□□□□□ -0.44
SSXP3-201ENST00000442971 DNAJC5GQ8N7S2 189 aa12.32□□□□□ -0.44
SSXP3-201ENST00000442971 SYT17Q9BSW7 474 aa12.32□□□□□ -0.44
SSXP3-201ENST00000442971 CFDP1Q9UEE9 299 aaPredicted RBP12.32□□□□□ -0.44
SSXP3-201ENST00000442971 SOS2Q07890 1332 aaPredicted RBP12.32□□□□□ -0.44
SSXP3-201ENST00000442971 PARD3Q8TEW0 1356 aa12.31□□□□□ -0.44
SSXP3-201ENST00000442971 SLIT2O94813 1529 aa12.31□□□□□ -0.44
SSXP3-201ENST00000442971 NPM3O75607 178 aaKnown RBP12.3□□□□□ -0.44
SSXP3-201ENST00000442971 TBX22Q9Y458 520 aa12.3□□□□□ -0.44
SSXP3-201ENST00000442971 NUP188Q5SRE5 1749 aa12.29□□□□□ -0.44
SSXP3-201ENST00000442971 A0A0G2JS52 829 aa12.29□□□□□ -0.44
SSXP3-201ENST00000442971 MYT1Q01538 1121 aa12.29□□□□□ -0.44
SSXP3-201ENST00000442971 FAM182BQ5T319 152 aa12.29□□□□□ -0.44
SSXP3-201ENST00000442971 FHDC1Q9C0D6 1143 aaPredicted RBP12.29□□□□□ -0.44
SSXP3-201ENST00000442971 WWC3Q9ULE0 1092 aa12.29□□□□□ -0.44
SSXP3-201ENST00000442971 ADGRB2O60241 1585 aa12.28□□□□□ -0.44
SSXP3-201ENST00000442971 LAMC1P11047 1609 aa12.28□□□□□ -0.44
SSXP3-201ENST00000442971 MYOM1P52179 1685 aa12.28□□□□□ -0.44
SSXP3-201ENST00000442971 RREB1Q92766 1687 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 176.1 ms