RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 FANCAO15360 1455 aa15.62■□□□□ 0.09
CD44-209ENST00000433892 DEPDC5O75140 1603 aa15.62■□□□□ 0.09
CD44-209ENST00000433892 IPO9Q96P70 1041 aaKnown RBP15.61■□□□□ 0.09
CD44-209ENST00000433892 ATP7AQ04656 1500 aa15.61■□□□□ 0.09
CD44-209ENST00000433892 TET3O43151 1660 aa15.61■□□□□ 0.09
CD44-209ENST00000433892 TCERG1O14776 1098 aaKnown RBP15.6■□□□□ 0.09
CD44-209ENST00000433892 CRBNQ96SW2 442 aa15.6■□□□□ 0.09
CD44-209ENST00000433892 PLEKHH1Q9ULM0 1364 aa15.59■□□□□ 0.09
CD44-209ENST00000433892 SYNMO15061 1565 aa15.59■□□□□ 0.09
CD44-209ENST00000433892 CFAP70Q5T0N1 1121 aa15.59■□□□□ 0.09
CD44-209ENST00000433892 EIF3AQ14152 1382 aaKnown RBP15.58■□□□□ 0.08
CD44-209ENST00000433892 ASXL1Q8IXJ9 1541 aa15.58■□□□□ 0.08
CD44-209ENST00000433892 INO80Q9ULG1 1556 aaPredicted RBP15.58■□□□□ 0.08
CD44-209ENST00000433892 VWDEQ8N2E2 1590 aa15.57■□□□□ 0.08
CD44-209ENST00000433892 UGGT1Q9NYU2 1555 aa15.57■□□□□ 0.08
CD44-209ENST00000433892 ADGRL1O94910 1474 aa15.57■□□□□ 0.08
CD44-209ENST00000433892 C20orf194Q5TEA3 1177 aa15.57■□□□□ 0.08
CD44-209ENST00000433892 ABCA9Q8IUA7 1624 aa15.57■□□□□ 0.08
CD44-209ENST00000433892 ADGRF5Q8IZF2 1346 aa15.56■□□□□ 0.08
CD44-209ENST00000433892 PDE4AP27815 886 aa15.56■□□□□ 0.08
CD44-209ENST00000433892 NBR1Q14596 966 aa15.56■□□□□ 0.08
CD44-209ENST00000433892 ZBTB47Q9UFB7 747 aaPredicted RBP15.56■□□□□ 0.08
CD44-209ENST00000433892 DUSP27Q5VZP5 1158 aa15.55■□□□□ 0.08
CD44-209ENST00000433892 NPM2Q86SE8 214 aaKnown RBP15.55■□□□□ 0.08
CD44-209ENST00000433892 MYOM1P52179 1685 aa15.55■□□□□ 0.08
CD44-209ENST00000433892 SKAP1Q86WV1 359 aa15.54■□□□□ 0.08
CD44-209ENST00000433892 ZNF521Q96K83 1311 aa15.54■□□□□ 0.08
CD44-209ENST00000433892 GOLGA2Q08379 1002 aa15.54■□□□□ 0.08
CD44-209ENST00000433892 CCDC146Q8IYE0 955 aa15.54■□□□□ 0.08
CD44-209ENST00000433892 PIK3C2GO75747 1445 aa15.53■□□□□ 0.08
CD44-209ENST00000433892 BCL11AQ9H165 835 aa15.53■□□□□ 0.08
CD44-209ENST00000433892 MROH1Q8NDA8 1641 aa15.53■□□□□ 0.08
CD44-209ENST00000433892 MS4A1P11836 297 aa15.52■□□□□ 0.08
CD44-209ENST00000433892 BACH2Q9BYV9 841 aa15.52■□□□□ 0.08
CD44-209ENST00000433892 NPC1L1Q9UHC9 1359 aa15.52■□□□□ 0.08
CD44-209ENST00000433892 KIAA1210Q9ULL0 1709 aa15.52■□□□□ 0.07
CD44-209ENST00000433892 KDM5AP29375 1690 aaKnown RBP15.52■□□□□ 0.07
CD44-209ENST00000433892 MAP3K4Q9Y6R4 1608 aa15.51■□□□□ 0.07
CD44-209ENST00000433892 CARD14Q9BXL6 1004 aa15.51■□□□□ 0.07
CD44-209ENST00000433892 ERVK-7P63135 1459 aa15.51■□□□□ 0.07
CD44-209ENST00000433892 ABCA6Q8N139 1617 aa15.5■□□□□ 0.07
CD44-209ENST00000433892 ASXL2Q76L83 1435 aa15.5■□□□□ 0.07
CD44-209ENST00000433892 MYOM2P54296 1465 aa15.5■□□□□ 0.07
CD44-209ENST00000433892 NEURL4Q96JN8 1562 aa15.49■□□□□ 0.07
CD44-209ENST00000433892 APAF1O14727 1248 aa15.49■□□□□ 0.07
CD44-209ENST00000433892 CHGAP10645 457 aaKnown RBP15.49■□□□□ 0.07
CD44-209ENST00000433892 SLFN5Q08AF3 891 aa15.49■□□□□ 0.07
CD44-209ENST00000433892 EFCAB6Q5THR3 1501 aa15.49■□□□□ 0.07
CD44-209ENST00000433892 SLC24A1O60721 1099 aa15.48■□□□□ 0.07
CD44-209ENST00000433892 SPINK5Q9NQ38 1064 aaPredicted RBP15.47■□□□□ 0.07
CD44-209ENST00000433892 KIF1BO60333 1816 aa15.47■□□□□ 0.07
CD44-209ENST00000433892 PPRC1Q5VV67 1664 aaKnown RBP15.46■□□□□ 0.07
CD44-209ENST00000433892 KIDINS220Q9ULH0 1771 aa15.46■□□□□ 0.07
CD44-209ENST00000433892 DEKP35659 375 aaKnown RBP15.46■□□□□ 0.07
CD44-209ENST00000433892 MROH2AA6NES4 1674 aa15.46■□□□□ 0.06
CD44-209ENST00000433892 NOS1P29475 1434 aa15.45■□□□□ 0.06
CD44-209ENST00000433892 KDM2BQ8NHM5 1336 aa15.45■□□□□ 0.06
CD44-209ENST00000433892 TRMT2AQ8IZ69 625 aaKnown RBP15.45■□□□□ 0.06
CD44-209ENST00000433892 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.45■□□□□ 0.06
CD44-209ENST00000433892 TRAK1Q9UPV9 953 aa15.45■□□□□ 0.06
CD44-209ENST00000433892 ZNF518AQ6AHZ1 1483 aa15.43■□□□□ 0.06
CD44-209ENST00000433892 GGT6Q6P531 493 aa15.43■□□□□ 0.06
CD44-209ENST00000433892 CENPJQ9HC77 1338 aaPredicted RBP15.43■□□□□ 0.06
CD44-209ENST00000433892 IFT172Q9UG01 1749 aa15.43■□□□□ 0.06
CD44-209ENST00000433892 NRXN1Q9ULB1 1477 aa15.43■□□□□ 0.06
CD44-209ENST00000433892 CENPQQ7L2Z9 268 aaPredicted RBP15.42■□□□□ 0.06
CD44-209ENST00000433892 DMRT2Q9Y5R5 561 aa15.42■□□□□ 0.06
CD44-209ENST00000433892 BCAR3O75815 825 aa15.41■□□□□ 0.06
CD44-209ENST00000433892 LMTK2Q8IWU2 1503 aa15.41■□□□□ 0.06
CD44-209ENST00000433892 NKTRP30414 1462 aaKnown RBP15.41■□□□□ 0.06
CD44-209ENST00000433892 SBNO2Q9Y2G9 1366 aa15.41■□□□□ 0.06
CD44-209ENST00000433892 TNNT2P45379 298 aaPredicted RBP15.41■□□□□ 0.06
CD44-209ENST00000433892 TMEM132EQ6IEE7 984 aa15.41■□□□□ 0.06
CD44-209ENST00000433892 CFAP65Q6ZU64 1925 aaKnown RBP15.4■□□□□ 0.06
CD44-209ENST00000433892 ADGRB3O60242 1522 aa15.4■□□□□ 0.06
CD44-209ENST00000433892 E9PSI1 815 aa15.4■□□□□ 0.06
CD44-209ENST00000433892 SLC12A5Q9H2X9 1139 aa15.4■□□□□ 0.06
CD44-209ENST00000433892 NPATQ14207 1427 aa15.4■□□□□ 0.06
CD44-209ENST00000433892 NPM1P06748 294 aaKnown RBP eCLIP15.4■□□□□ 0.06
CD44-209ENST00000433892 MYO3AQ8NEV4 1616 aa15.39■□□□□ 0.05
CD44-209ENST00000433892 RTL5Q5HYW3 569 aaPredicted RBP15.39■□□□□ 0.05
CD44-209ENST00000433892 C14orf93Q9H972 538 aaKnown RBP15.39■□□□□ 0.05
CD44-209ENST00000433892 NSD3Q9BZ95 1437 aa15.39■□□□□ 0.05
CD44-209ENST00000433892 MORC1Q86VD1 984 aa15.38■□□□□ 0.05
CD44-209ENST00000433892 POLR3AO14802 1390 aaPredicted RBP15.37■□□□□ 0.05
CD44-209ENST00000433892 CD109Q6YHK3 1445 aa15.37■□□□□ 0.05
CD44-209ENST00000433892 LAS1LQ9Y4W2 734 aaKnown RBP15.37■□□□□ 0.05
CD44-209ENST00000433892 SETBP1Q9Y6X0 1596 aa15.37■□□□□ 0.05
CD44-209ENST00000433892 WWC1Q8IX03 1113 aa15.36■□□□□ 0.05
CD44-209ENST00000433892 POGZQ7Z3K3 1410 aa15.36■□□□□ 0.05
CD44-209ENST00000433892 NUTM2DQ5VT03 806 aaPredicted RBP15.36■□□□□ 0.05
CD44-209ENST00000433892 FRMPD1Q5SYB0 1578 aa15.35■□□□□ 0.05
CD44-209ENST00000433892 NEUROD2Q15784 382 aa15.35■□□□□ 0.05
CD44-209ENST00000433892 NGEFQ8N5V2 710 aa15.34■□□□□ 0.05
CD44-209ENST00000433892 ADGRB1O14514 1584 aa15.34■□□□□ 0.05
CD44-209ENST00000433892 PPLO60437 1756 aa15.33■□□□□ 0.05
CD44-209ENST00000433892 RGS3P49796 1198 aa15.33■□□□□ 0.05
CD44-209ENST00000433892 RRP7AQ9Y3A4 280 aaKnown RBP15.33■□□□□ 0.05
CD44-209ENST00000433892 MLH3Q9UHC1 1453 aa15.33■□□□□ 0.05
CD44-209ENST00000433892 QRICH2Q9H0J4 1663 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms