RNA–Protein interactions for RNA: ENST00000418660.1

LINC00404-201, long intergenic non-protein coding RNA 404, humanhuman

TSL 2 BASIC

Gene LINC00404, Length 428 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00404-201ENST00000418660 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.76■■□□□ 1.55
LINC00404-201ENST00000418660 SLC26A8Q96RN1 970 aa24.76■■□□□ 1.55
LINC00404-201ENST00000418660 SPHKAPQ2M3C7 1700 aa24.75■■□□□ 1.55
LINC00404-201ENST00000418660 PPP1R15AO75807 674 aaPredicted RBP24.75■■□□□ 1.55
LINC00404-201ENST00000418660 BCANQ96GW7 911 aa24.75■■□□□ 1.55
LINC00404-201ENST00000418660 PLEKHG1Q9ULL1 1385 aa24.75■■□□□ 1.55
LINC00404-201ENST00000418660 KCNA6P17658 529 aa24.72■■□□□ 1.55
LINC00404-201ENST00000418660 SLC4A1APQ9BWU0 796 aaKnown RBP24.69■■□□□ 1.54
LINC00404-201ENST00000418660 TRPM2O94759 1503 aa24.68■■□□□ 1.54
LINC00404-201ENST00000418660 PIP4K2BP78356 416 aa24.67■■□□□ 1.54
LINC00404-201ENST00000418660 NUTM2DQ5VT03 806 aaPredicted RBP24.67■■□□□ 1.54
LINC00404-201ENST00000418660 SENP3Q9H4L4 574 aaPredicted RBP24.67■■□□□ 1.54
LINC00404-201ENST00000418660 SCAF1Q9H7N4 1312 aaKnown RBP24.66■■□□□ 1.54
LINC00404-201ENST00000418660 TBX22Q9Y458 520 aa24.66■■□□□ 1.54
LINC00404-201ENST00000418660 CLTCL1P53675 1640 aa24.64■■□□□ 1.54
LINC00404-201ENST00000418660 ALKQ9UM73 1620 aa24.64■■□□□ 1.54
LINC00404-201ENST00000418660 NWD1Q149M9 1564 aa24.63■■□□□ 1.53
LINC00404-201ENST00000418660 ZNF326Q5BKZ1 582 aaKnown RBP24.63■■□□□ 1.53
LINC00404-201ENST00000418660 PROSER2Q86WR7 435 aaPredicted RBP24.62■■□□□ 1.53
LINC00404-201ENST00000418660 NKTRP30414 1462 aaKnown RBP24.62■■□□□ 1.53
LINC00404-201ENST00000418660 ADAMTS13Q76LX8 1427 aa24.61■■□□□ 1.53
LINC00404-201ENST00000418660 TMEM94Q12767 1356 aa24.61■■□□□ 1.53
LINC00404-201ENST00000418660 XIRP1Q702N8 1843 aaKnown RBP24.61■■□□□ 1.53
LINC00404-201ENST00000418660 ACIN1Q9UKV3 1341 aaKnown RBP24.6■■□□□ 1.53
LINC00404-201ENST00000418660 DIP2AQ14689 1571 aa24.59■■□□□ 1.53
LINC00404-201ENST00000418660 PIK3R4Q99570 1358 aa24.57■■□□□ 1.52
LINC00404-201ENST00000418660 CHD2O14647 1828 aaKnown RBP24.57■■□□□ 1.52
LINC00404-201ENST00000418660 MPHOSPH9Q99550 1183 aa24.57■■□□□ 1.52
LINC00404-201ENST00000418660 SETD5Q9C0A6 1442 aa24.57■■□□□ 1.52
LINC00404-201ENST00000418660 HSPA1LP34931 641 aa24.56■■□□□ 1.52
LINC00404-201ENST00000418660 KIF1BO60333 1816 aa24.56■■□□□ 1.52
LINC00404-201ENST00000418660 FOXD1Q16676 465 aa24.54■■□□□ 1.52
LINC00404-201ENST00000418660 RBM33Q96EV2 1170 aaKnown RBP24.54■■□□□ 1.52
LINC00404-201ENST00000418660 NEXMIFQ5QGS0 1516 aa24.54■■□□□ 1.52
LINC00404-201ENST00000418660 SETBP1Q9Y6X0 1596 aa24.53■■□□□ 1.52
LINC00404-201ENST00000418660 NRXN3Q9Y4C0 1643 aa24.5■■□□□ 1.51
LINC00404-201ENST00000418660 RPGRIP1LQ68CZ1 1315 aa24.49■■□□□ 1.51
LINC00404-201ENST00000418660 VGFO15240 615 aaPredicted RBP24.48■■□□□ 1.51
LINC00404-201ENST00000418660 MSH6P52701 1360 aa24.48■■□□□ 1.51
LINC00404-201ENST00000418660 AMOTL2Q9Y2J4 779 aa24.48■■□□□ 1.51
LINC00404-201ENST00000418660 NCOA3Q9Y6Q9 1424 aa24.48■■□□□ 1.51
LINC00404-201ENST00000418660 RAB3GAP2Q9H2M9 1393 aa24.47■■□□□ 1.51
LINC00404-201ENST00000418660 CCDC144AA2RUR9 1427 aa24.46■■□□□ 1.51
LINC00404-201ENST00000418660 PTPRUQ92729 1446 aa24.46■■□□□ 1.51
LINC00404-201ENST00000418660 DISP3Q9P2K9 1392 aa24.46■■□□□ 1.51
LINC00404-201ENST00000418660 FAM135BQ49AJ0 1406 aa24.44■■□□□ 1.5
LINC00404-201ENST00000418660 METP08581 1390 aa24.42■■□□□ 1.5
LINC00404-201ENST00000418660 C14orf37Q86TY3 774 aa24.4■■□□□ 1.5
LINC00404-201ENST00000418660 XRN1Q8IZH2 1706 aaKnown RBP24.39■■□□□ 1.5
LINC00404-201ENST00000418660 SLAIN2Q9P270 581 aa24.39■■□□□ 1.49
LINC00404-201ENST00000418660 SPATA31E1Q6ZUB1 1445 aa24.38■■□□□ 1.49
LINC00404-201ENST00000418660 C19orf44Q9H6X5 657 aa24.38■■□□□ 1.49
LINC00404-201ENST00000418660 PPLO60437 1756 aa24.38■■□□□ 1.49
LINC00404-201ENST00000418660 HRCP23327 699 aa24.37■■□□□ 1.49
LINC00404-201ENST00000418660 RGL3Q3MIN7 710 aa24.36■■□□□ 1.49
LINC00404-201ENST00000418660 ROBO1Q9Y6N7 1651 aa24.34■■□□□ 1.49
LINC00404-201ENST00000418660 CADPS2Q86UW7 1296 aa24.34■■□□□ 1.49
LINC00404-201ENST00000418660 ATF3P18847 181 aa24.33■■□□□ 1.49
LINC00404-201ENST00000418660 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.32■■□□□ 1.48
LINC00404-201ENST00000418660 ANKRD30BQ9BXX2 1392 aa24.32■■□□□ 1.48
LINC00404-201ENST00000418660 SETD1AO15047 1707 aaKnown RBP24.31■■□□□ 1.48
LINC00404-201ENST00000418660 ADGRF5Q8IZF2 1346 aa24.31■■□□□ 1.48
LINC00404-201ENST00000418660 MED1Q15648 1581 aaPredicted RBP24.29■■□□□ 1.48
LINC00404-201ENST00000418660 DCCP43146 1447 aa24.28■■□□□ 1.48
LINC00404-201ENST00000418660 IFT172Q9UG01 1749 aa24.27■■□□□ 1.48
LINC00404-201ENST00000418660 PTCH1Q13635 1447 aa24.26■■□□□ 1.47
LINC00404-201ENST00000418660 PRAG1Q86YV5 1406 aa24.26■■□□□ 1.47
LINC00404-201ENST00000418660 ILDR2Q71H61 639 aa24.25■■□□□ 1.47
LINC00404-201ENST00000418660 ADGRL3Q9HAR2 1447 aa24.24■■□□□ 1.47
LINC00404-201ENST00000418660 ROBO2Q9HCK4 1378 aa24.23■■□□□ 1.47
LINC00404-201ENST00000418660 PIK3C2GO75747 1445 aa24.21■■□□□ 1.47
LINC00404-201ENST00000418660 PHLPP1O60346 1717 aa24.19■■□□□ 1.46
LINC00404-201ENST00000418660 MST1RQ04912 1400 aa24.18■■□□□ 1.46
LINC00404-201ENST00000418660 NALCNQ8IZF0 1738 aa24.18■■□□□ 1.46
LINC00404-201ENST00000418660 BRINP3Q76B58 766 aa24.18■■□□□ 1.46
LINC00404-201ENST00000418660 MYOM2P54296 1465 aa24.18■■□□□ 1.46
LINC00404-201ENST00000418660 NRXN1Q9ULB1 1477 aa24.16■■□□□ 1.46
LINC00404-201ENST00000418660 PHF23Q9BUL5 403 aaPredicted RBP24.16■■□□□ 1.46
LINC00404-201ENST00000418660 LRPPRCP42704 1394 aaKnown RBP24.16■■□□□ 1.46
LINC00404-201ENST00000418660 AHDC1Q5TGY3 1603 aaPredicted RBP24.15■■□□□ 1.46
LINC00404-201ENST00000418660 TMEM132EQ6IEE7 984 aa24.15■■□□□ 1.46
LINC00404-201ENST00000418660 C14orf93Q9H972 538 aaKnown RBP24.15■■□□□ 1.46
LINC00404-201ENST00000418660 COL16A1Q07092 1604 aaPredicted RBP24.14■■□□□ 1.46
LINC00404-201ENST00000418660 STK26Q9P289 416 aa24.14■■□□□ 1.45
LINC00404-201ENST00000418660 ASXL1Q8IXJ9 1541 aa24.14■■□□□ 1.45
LINC00404-201ENST00000418660 ABCC11Q96J66 1382 aa24.14■■□□□ 1.45
LINC00404-201ENST00000418660 JCADQ9P266 1359 aa24.14■■□□□ 1.45
LINC00404-201ENST00000418660 TECPR2O15040 1411 aa24.13■■□□□ 1.45
LINC00404-201ENST00000418660 CFAP70Q5T0N1 1121 aa24.11■■□□□ 1.45
LINC00404-201ENST00000418660 YTHDC2Q9H6S0 1430 aaKnown RBP24.1■■□□□ 1.45
LINC00404-201ENST00000418660 LAMC1P11047 1609 aa24.09■■□□□ 1.45
LINC00404-201ENST00000418660 C1orf167Q5SNV9 1468 aa24.08■■□□□ 1.45
LINC00404-201ENST00000418660 WAPLQ7Z5K2 1190 aa24.08■■□□□ 1.45
LINC00404-201ENST00000418660 STAC3Q96MF2 364 aa24.08■■□□□ 1.45
LINC00404-201ENST00000418660 KNDC1Q76NI1 1749 aa24.07■■□□□ 1.44
LINC00404-201ENST00000418660 DCAF11Q8TEB1 546 aa24.07■■□□□ 1.44
LINC00404-201ENST00000418660 SIRT1Q96EB6 747 aa24.07■■□□□ 1.44
LINC00404-201ENST00000418660 DHX57Q6P158 1386 aaKnown RBP24.06■■□□□ 1.44
LINC00404-201ENST00000418660 SOCS7O14512 581 aa24.05■■□□□ 1.44
LINC00404-201ENST00000418660 KDM2AQ9Y2K7 1162 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 218 ms