RNA–Protein interactions for RNA: ENST00000417122.6

ITGB1-204, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-204ENST00000417122 BCANQ96GW7 911 aa23.48■■□□□ 1.35
ITGB1-204ENST00000417122 PPP1R15AO75807 674 aaPredicted RBP23.47■■□□□ 1.35
ITGB1-204ENST00000417122 SLC26A8Q96RN1 970 aa23.47■■□□□ 1.35
ITGB1-204ENST00000417122 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.46■■□□□ 1.35
ITGB1-204ENST00000417122 PLEKHG1Q9ULL1 1385 aa23.45■■□□□ 1.34
ITGB1-204ENST00000417122 TOM1O60784 492 aa23.44■■□□□ 1.34
ITGB1-204ENST00000417122 SENP3Q9H4L4 574 aaPredicted RBP23.43■■□□□ 1.34
ITGB1-204ENST00000417122 TRPM2O94759 1503 aa23.43■■□□□ 1.34
ITGB1-204ENST00000417122 NUTM2DQ5VT03 806 aaPredicted RBP23.42■■□□□ 1.34
ITGB1-204ENST00000417122 SLC4A1APQ9BWU0 796 aaKnown RBP23.42■■□□□ 1.34
ITGB1-204ENST00000417122 CLTCL1P53675 1640 aa23.41■■□□□ 1.34
ITGB1-204ENST00000417122 KCNA6P17658 529 aa23.41■■□□□ 1.34
ITGB1-204ENST00000417122 SCAF1Q9H7N4 1312 aaKnown RBP23.39■■□□□ 1.34
ITGB1-204ENST00000417122 XIRP1Q702N8 1843 aaKnown RBP23.39■■□□□ 1.33
ITGB1-204ENST00000417122 PIP4K2BP78356 416 aa23.39■■□□□ 1.33
ITGB1-204ENST00000417122 KIF1BO60333 1816 aa23.38■■□□□ 1.33
ITGB1-204ENST00000417122 ALKQ9UM73 1620 aa23.37■■□□□ 1.33
ITGB1-204ENST00000417122 NWD1Q149M9 1564 aa23.37■■□□□ 1.33
ITGB1-204ENST00000417122 ZNF326Q5BKZ1 582 aaKnown RBP23.37■■□□□ 1.33
ITGB1-204ENST00000417122 TBX22Q9Y458 520 aa23.36■■□□□ 1.33
ITGB1-204ENST00000417122 CHD2O14647 1828 aaKnown RBP23.36■■□□□ 1.33
ITGB1-204ENST00000417122 ADAMTS13Q76LX8 1427 aa23.34■■□□□ 1.33
ITGB1-204ENST00000417122 DIP2AQ14689 1571 aa23.33■■□□□ 1.33
ITGB1-204ENST00000417122 NKTRP30414 1462 aaKnown RBP23.33■■□□□ 1.33
ITGB1-204ENST00000417122 TMEM94Q12767 1356 aa23.33■■□□□ 1.33
ITGB1-204ENST00000417122 PROSER2Q86WR7 435 aaPredicted RBP23.33■■□□□ 1.33
ITGB1-204ENST00000417122 SETD5Q9C0A6 1442 aa23.33■■□□□ 1.32
ITGB1-204ENST00000417122 FOXD1Q16676 465 aa23.3■■□□□ 1.32
ITGB1-204ENST00000417122 ACIN1Q9UKV3 1341 aaKnown RBP23.3■■□□□ 1.32
ITGB1-204ENST00000417122 MPHOSPH9Q99550 1183 aa23.29■■□□□ 1.32
ITGB1-204ENST00000417122 NEXMIFQ5QGS0 1516 aa23.28■■□□□ 1.32
ITGB1-204ENST00000417122 RBM33Q96EV2 1170 aaKnown RBP23.28■■□□□ 1.32
ITGB1-204ENST00000417122 PIK3R4Q99570 1358 aa23.27■■□□□ 1.32
ITGB1-204ENST00000417122 SETBP1Q9Y6X0 1596 aa23.27■■□□□ 1.32
ITGB1-204ENST00000417122 NRXN3Q9Y4C0 1643 aa23.27■■□□□ 1.32
ITGB1-204ENST00000417122 HSPA1LP34931 641 aa23.27■■□□□ 1.32
ITGB1-204ENST00000417122 RAB3GAP2Q9H2M9 1393 aa23.23■■□□□ 1.31
ITGB1-204ENST00000417122 MSH6P52701 1360 aa23.21■■□□□ 1.31
ITGB1-204ENST00000417122 CCDC144AA2RUR9 1427 aa23.21■■□□□ 1.31
ITGB1-204ENST00000417122 PTPRUQ92729 1446 aa23.2■■□□□ 1.3
ITGB1-204ENST00000417122 RPGRIP1LQ68CZ1 1315 aa23.2■■□□□ 1.3
ITGB1-204ENST00000417122 AMOTL2Q9Y2J4 779 aa23.2■■□□□ 1.3
ITGB1-204ENST00000417122 VGFO15240 615 aaPredicted RBP23.19■■□□□ 1.3
ITGB1-204ENST00000417122 PPLO60437 1756 aa23.19■■□□□ 1.3
ITGB1-204ENST00000417122 NCOA3Q9Y6Q9 1424 aa23.18■■□□□ 1.3
ITGB1-204ENST00000417122 DISP3Q9P2K9 1392 aa23.17■■□□□ 1.3
ITGB1-204ENST00000417122 METP08581 1390 aa23.16■■□□□ 1.3
ITGB1-204ENST00000417122 XRN1Q8IZH2 1706 aaKnown RBP23.16■■□□□ 1.3
ITGB1-204ENST00000417122 FAM135BQ49AJ0 1406 aa23.15■■□□□ 1.3
ITGB1-204ENST00000417122 C14orf37Q86TY3 774 aa23.14■■□□□ 1.29
ITGB1-204ENST00000417122 SPATA31E1Q6ZUB1 1445 aa23.13■■□□□ 1.29
ITGB1-204ENST00000417122 ROBO1Q9Y6N7 1651 aa23.13■■□□□ 1.29
ITGB1-204ENST00000417122 RGL3Q3MIN7 710 aa23.12■■□□□ 1.29
ITGB1-204ENST00000417122 SETD1AO15047 1707 aaKnown RBP23.11■■□□□ 1.29
ITGB1-204ENST00000417122 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.11■■□□□ 1.29
ITGB1-204ENST00000417122 C19orf44Q9H6X5 657 aa23.1■■□□□ 1.29
ITGB1-204ENST00000417122 SLAIN2Q9P270 581 aa23.1■■□□□ 1.29
ITGB1-204ENST00000417122 IFT172Q9UG01 1749 aa23.09■■□□□ 1.29
ITGB1-204ENST00000417122 HRCP23327 699 aa23.09■■□□□ 1.29
ITGB1-204ENST00000417122 ANKRD30BQ9BXX2 1392 aa23.06■■□□□ 1.28
ITGB1-204ENST00000417122 ATF3P18847 181 aa23.06■■□□□ 1.28
ITGB1-204ENST00000417122 CADPS2Q86UW7 1296 aa23.06■■□□□ 1.28
ITGB1-204ENST00000417122 ADGRF5Q8IZF2 1346 aa23.06■■□□□ 1.28
ITGB1-204ENST00000417122 MED1Q15648 1581 aaPredicted RBP23.04■■□□□ 1.28
ITGB1-204ENST00000417122 DCCP43146 1447 aa23.01■■□□□ 1.27
ITGB1-204ENST00000417122 PTCH1Q13635 1447 aa23■■□□□ 1.27
ITGB1-204ENST00000417122 PHLPP1O60346 1717 aa22.99■■□□□ 1.27
ITGB1-204ENST00000417122 ADGRL3Q9HAR2 1447 aa22.99■■□□□ 1.27
ITGB1-204ENST00000417122 NALCNQ8IZF0 1738 aa22.98■■□□□ 1.27
ITGB1-204ENST00000417122 ROBO2Q9HCK4 1378 aa22.98■■□□□ 1.27
ITGB1-204ENST00000417122 PRAG1Q86YV5 1406 aa22.98■■□□□ 1.27
ITGB1-204ENST00000417122 ILDR2Q71H61 639 aa22.97■■□□□ 1.27
ITGB1-204ENST00000417122 PIK3C2GO75747 1445 aa22.97■■□□□ 1.27
ITGB1-204ENST00000417122 MYOM2P54296 1465 aa22.93■■□□□ 1.26
ITGB1-204ENST00000417122 MST1RQ04912 1400 aa22.93■■□□□ 1.26
ITGB1-204ENST00000417122 NRXN1Q9ULB1 1477 aa22.92■■□□□ 1.26
ITGB1-204ENST00000417122 COL16A1Q07092 1604 aaPredicted RBP22.91■■□□□ 1.26
ITGB1-204ENST00000417122 TMEM132EQ6IEE7 984 aa22.91■■□□□ 1.26
ITGB1-204ENST00000417122 BRINP3Q76B58 766 aa22.91■■□□□ 1.26
ITGB1-204ENST00000417122 ASXL1Q8IXJ9 1541 aa22.91■■□□□ 1.26
ITGB1-204ENST00000417122 AHDC1Q5TGY3 1603 aaPredicted RBP22.9■■□□□ 1.26
ITGB1-204ENST00000417122 PHF23Q9BUL5 403 aaPredicted RBP22.9■■□□□ 1.26
ITGB1-204ENST00000417122 LRPPRCP42704 1394 aaKnown RBP22.89■■□□□ 1.26
ITGB1-204ENST00000417122 C14orf93Q9H972 538 aaKnown RBP22.89■■□□□ 1.25
ITGB1-204ENST00000417122 STK26Q9P289 416 aa22.89■■□□□ 1.25
ITGB1-204ENST00000417122 KNDC1Q76NI1 1749 aa22.88■■□□□ 1.25
ITGB1-204ENST00000417122 LAMC1P11047 1609 aa22.88■■□□□ 1.25
ITGB1-204ENST00000417122 TECPR2O15040 1411 aa22.88■■□□□ 1.25
ITGB1-204ENST00000417122 ABCC11Q96J66 1382 aa22.87■■□□□ 1.25
ITGB1-204ENST00000417122 JCADQ9P266 1359 aa22.87■■□□□ 1.25
ITGB1-204ENST00000417122 CFAP70Q5T0N1 1121 aa22.86■■□□□ 1.25
ITGB1-204ENST00000417122 YTHDC2Q9H6S0 1430 aaKnown RBP22.85■■□□□ 1.25
ITGB1-204ENST00000417122 NHSL1Q5SYE7 1610 aa22.84■■□□□ 1.25
ITGB1-204ENST00000417122 C1orf167Q5SNV9 1468 aa22.84■■□□□ 1.25
ITGB1-204ENST00000417122 WAPLQ7Z5K2 1190 aa22.83■■□□□ 1.25
ITGB1-204ENST00000417122 DCAF11Q8TEB1 546 aa22.83■■□□□ 1.25
ITGB1-204ENST00000417122 DHX57Q6P158 1386 aaKnown RBP22.82■■□□□ 1.24
ITGB1-204ENST00000417122 KDM2AQ9Y2K7 1162 aa22.82■■□□□ 1.24
ITGB1-204ENST00000417122 STAC3Q96MF2 364 aa22.81■■□□□ 1.24
ITGB1-204ENST00000417122 CDC42BPGQ6DT37 1551 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms