RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 PTPN5P54829 565 aa11.01□□□□□ -0.65
HMGB1P13-201ENST00000406019 TSR3Q9UJK0 312 aaKnown RBP11.01□□□□□ -0.65
HMGB1P13-201ENST00000406019 HPS5Q9UPZ3 1129 aa11.01□□□□□ -0.65
HMGB1P13-201ENST00000406019 TMUB1Q9BVT8 246 aa10.99□□□□□ -0.65
HMGB1P13-201ENST00000406019 SLC10A3P09131 477 aa10.97□□□□□ -0.65
HMGB1P13-201ENST00000406019 SLF2Q8IX21 1173 aa10.97□□□□□ -0.65
HMGB1P13-201ENST00000406019 NYAP1Q6ZVC0 841 aa10.95□□□□□ -0.66
HMGB1P13-201ENST00000406019 DAXXQ9UER7 740 aaPredicted RBP10.95□□□□□ -0.66
HMGB1P13-201ENST00000406019 APLP1P51693 650 aa10.94□□□□□ -0.66
HMGB1P13-201ENST00000406019 AMHR2Q16671 573 aa10.93□□□□□ -0.66
HMGB1P13-201ENST00000406019 REPIN1Q9BWE0 567 aaKnown RBP10.93□□□□□ -0.66
HMGB1P13-201ENST00000406019 PPP4CP60510 307 aa10.92□□□□□ -0.66
HMGB1P13-201ENST00000406019 TRIM66O15016 1216 aa10.91□□□□□ -0.66
HMGB1P13-201ENST00000406019 HDGFP51858 240 aaKnown RBP10.91□□□□□ -0.66
HMGB1P13-201ENST00000406019 SLC24A3Q9HC58 644 aa10.91□□□□□ -0.66
HMGB1P13-201ENST00000406019 MDM2Q00987 491 aaPredicted RBP10.9□□□□□ -0.66
HMGB1P13-201ENST00000406019 KRI1Q8N9T8 703 aaKnown RBP10.9□□□□□ -0.66
HMGB1P13-201ENST00000406019 RNF40O75150 1001 aa10.89□□□□□ -0.67
HMGB1P13-201ENST00000406019 ITGBL1O95965 494 aaPredicted RBP10.89□□□□□ -0.67
HMGB1P13-201ENST00000406019 AK7Q96M32 723 aa10.89□□□□□ -0.67
HMGB1P13-201ENST00000406019 CFHP08603 1231 aa10.86□□□□□ -0.67
HMGB1P13-201ENST00000406019 TJAP1Q5JTD0 557 aa10.86□□□□□ -0.67
HMGB1P13-201ENST00000406019 NECTIN2Q92692 538 aa10.86□□□□□ -0.67
HMGB1P13-201ENST00000406019 GPCPD1Q9NPB8 672 aa10.86□□□□□ -0.67
HMGB1P13-201ENST00000406019 FAM217BQ9NTX9 383 aaPredicted RBP10.86□□□□□ -0.67
HMGB1P13-201ENST00000406019 CD46P15529 392 aa10.85□□□□□ -0.67
HMGB1P13-201ENST00000406019 CLCN1P35523 988 aa10.85□□□□□ -0.67
HMGB1P13-201ENST00000406019 IFFO2Q5TF58 517 aa10.85□□□□□ -0.67
HMGB1P13-201ENST00000406019 PARP9Q8IXQ6 854 aa10.85□□□□□ -0.67
HMGB1P13-201ENST00000406019 DDX11L8A8MPP1 907 aa10.84□□□□□ -0.67
HMGB1P13-201ENST00000406019 ACTN4O43707 911 aaKnown RBP10.84□□□□□ -0.67
HMGB1P13-201ENST00000406019 PRKCSHP14314 528 aaPredicted RBP10.84□□□□□ -0.67
HMGB1P13-201ENST00000406019 SLC4A3P48751 1232 aa10.83□□□□□ -0.68
HMGB1P13-201ENST00000406019 PLA2G2EQ9NZK7 142 aa10.83□□□□□ -0.68
HMGB1P13-201ENST00000406019 GCGRP47871 477 aa10.82□□□□□ -0.68
HMGB1P13-201ENST00000406019 SULF1Q8IWU6 871 aa10.82□□□□□ -0.68
HMGB1P13-201ENST00000406019 MTRQ99707 1265 aa10.82□□□□□ -0.68
HMGB1P13-201ENST00000406019 PDE4DQ08499 809 aa10.8□□□□□ -0.68
HMGB1P13-201ENST00000406019 GIGYF2Q6Y7W6 1299 aaKnown RBP10.8□□□□□ -0.68
HMGB1P13-201ENST00000406019 PRR14Q9BWN1 585 aa10.8□□□□□ -0.68
HMGB1P13-201ENST00000406019 RDH13Q8NBN7 331 aa10.79□□□□□ -0.68
HMGB1P13-201ENST00000406019 KMT5BQ4FZB7 885 aa10.78□□□□□ -0.68
HMGB1P13-201ENST00000406019 TPRNQ4KMQ1 711 aa10.77□□□□□ -0.69
HMGB1P13-201ENST00000406019 BLOC1S3Q6QNY0 202 aa10.77□□□□□ -0.69
HMGB1P13-201ENST00000406019 ZNF516Q92618 1163 aa10.77□□□□□ -0.69
HMGB1P13-201ENST00000406019 MS4A1P11836 297 aa10.76□□□□□ -0.69
HMGB1P13-201ENST00000406019 SSTR3P32745 418 aaPredicted RBP10.76□□□□□ -0.69
HMGB1P13-201ENST00000406019 TTLL12Q14166 644 aaPredicted RBP10.76□□□□□ -0.69
HMGB1P13-201ENST00000406019 IL21Q9HBE4 155 aa10.76□□□□□ -0.69
HMGB1P13-201ENST00000406019 PCDHB3Q9Y5E6 796 aa10.76□□□□□ -0.69
HMGB1P13-201ENST00000406019 FUT2Q10981 343 aa10.75□□□□□ -0.69
HMGB1P13-201ENST00000406019 RSPH4AQ5TD94 716 aa10.75□□□□□ -0.69
HMGB1P13-201ENST00000406019 COPS2P61201 443 aa10.74□□□□□ -0.69
HMGB1P13-201ENST00000406019 KCNC4Q03721 635 aa10.74□□□□□ -0.69
HMGB1P13-201ENST00000406019 MORN1Q5T089 497 aa10.74□□□□□ -0.69
HMGB1P13-201ENST00000406019 PUS10Q3MIT2 529 aaKnown RBP10.72□□□□□ -0.69
HMGB1P13-201ENST00000406019 A0A0G2JS52 829 aa10.71□□□□□ -0.69
HMGB1P13-201ENST00000406019 ZPR1O75312 459 aa10.71□□□□□ -0.69
HMGB1P13-201ENST00000406019 KDM4AO75164 1064 aa10.7□□□□□ -0.7
HMGB1P13-201ENST00000406019 ATP6V1AP38606 617 aa10.7□□□□□ -0.7
HMGB1P13-201ENST00000406019 NKX2-3Q8TAU0 364 aa10.7□□□□□ -0.7
HMGB1P13-201ENST00000406019 HLA-CQ95604 372 aa10.69□□□□□ -0.7
HMGB1P13-201ENST00000406019 THAP11Q96EK4 314 aa10.69□□□□□ -0.7
HMGB1P13-201ENST00000406019 HOXA2O43364 376 aa10.68□□□□□ -0.7
HMGB1P13-201ENST00000406019 TLL1O43897 1013 aa10.68□□□□□ -0.7
HMGB1P13-201ENST00000406019 GPBP1L1Q9HC44 474 aaPredicted RBP10.68□□□□□ -0.7
HMGB1P13-201ENST00000406019 USP46P62068 366 aa10.67□□□□□ -0.7
HMGB1P13-201ENST00000406019 SCUBE3Q8IX30 993 aa10.67□□□□□ -0.7
HMGB1P13-201ENST00000406019 SPIRE2Q8WWL2 714 aa10.67□□□□□ -0.7
HMGB1P13-201ENST00000406019 BEGAINQ9BUH8 593 aa10.67□□□□□ -0.7
HMGB1P13-201ENST00000406019 SLC27A5Q9Y2P5 690 aa10.67□□□□□ -0.7
HMGB1P13-201ENST00000406019 NR1I2O75469 434 aa10.66□□□□□ -0.7
HMGB1P13-201ENST00000406019 KDM4CQ9H3R0 1056 aa10.64□□□□□ -0.71
HMGB1P13-201ENST00000406019 SALL2Q9Y467 1007 aaPredicted RBP10.64□□□□□ -0.71
HMGB1P13-201ENST00000406019 BRICD5Q6PL45 260 aa10.63□□□□□ -0.71
HMGB1P13-201ENST00000406019 ADH1BP00325 375 aa10.62□□□□□ -0.71
HMGB1P13-201ENST00000406019 GUCA2AQ02747 115 aa10.62□□□□□ -0.71
HMGB1P13-201ENST00000406019 RNF19BQ6ZMZ0 732 aa10.62□□□□□ -0.71
HMGB1P13-201ENST00000406019 TBC1D2Q9BYX2 928 aa10.62□□□□□ -0.71
HMGB1P13-201ENST00000406019 PCDHGC3Q9UN70 934 aa10.62□□□□□ -0.71
HMGB1P13-201ENST00000406019 BRPF1P55201 1214 aaPredicted RBP10.61□□□□□ -0.71
HMGB1P13-201ENST00000406019 MOXD2PA6NHM9 499 aa10.6□□□□□ -0.71
HMGB1P13-201ENST00000406019 NUTM1Q86Y26 1132 aa10.6□□□□□ -0.71
HMGB1P13-201ENST00000406019 FAM160A2Q8N612 972 aaPredicted RBP10.6□□□□□ -0.71
HMGB1P13-201ENST00000406019 PLEKHG3A1L390 1219 aa10.59□□□□□ -0.71
HMGB1P13-201ENST00000406019 GRIPAP1Q4V328 841 aa10.59□□□□□ -0.71
HMGB1P13-201ENST00000406019 PPP1R18Q6NYC8 613 aa10.59□□□□□ -0.71
HMGB1P13-201ENST00000406019 FAM117AQ9C073 453 aa10.59□□□□□ -0.71
HMGB1P13-201ENST00000406019 NDUFV2P19404 249 aa10.58□□□□□ -0.72
HMGB1P13-201ENST00000406019 GJA5P36382 358 aa10.58□□□□□ -0.72
HMGB1P13-201ENST00000406019 MYSM1Q5VVJ2 828 aa10.57□□□□□ -0.72
HMGB1P13-201ENST00000406019 RSBN1LQ6PCB5 846 aaPredicted RBP10.57□□□□□ -0.72
HMGB1P13-201ENST00000406019 SPSB2Q99619 263 aa10.57□□□□□ -0.72
HMGB1P13-201ENST00000406019 SPTLC1O15269 473 aa10.56□□□□□ -0.72
HMGB1P13-201ENST00000406019 FMNL1O95466 1100 aaPredicted RBP10.56□□□□□ -0.72
HMGB1P13-201ENST00000406019 S1PR4O95977 384 aa10.56□□□□□ -0.72
HMGB1P13-201ENST00000406019 FDX1P10109 184 aa10.55□□□□□ -0.72
HMGB1P13-201ENST00000406019 MSS51Q4VC12 460 aa10.55□□□□□ -0.72
HMGB1P13-201ENST00000406019 EMID1Q96A84 441 aaPredicted RBP10.55□□□□□ -0.72
HMGB1P13-201ENST00000406019 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms