RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 RALGAPBQ86X10 1494 aa23.53■■□□□ 1.36
USP48-204ENST00000400301 ITSN2Q9NZM3 1697 aa23.53■■□□□ 1.36
USP48-204ENST00000400301 DNMT1P26358 1616 aaKnown RBP23.53■■□□□ 1.36
USP48-204ENST00000400301 MTHFSP49914 203 aa23.52■■□□□ 1.36
USP48-204ENST00000400301 PAK3O75914 559 aaPredicted RBP23.52■■□□□ 1.36
USP48-204ENST00000400301 CALD1Q05682 793 aaKnown RBP23.51■■□□□ 1.35
USP48-204ENST00000400301 CABP2Q9NPB3 220 aa23.51■■□□□ 1.35
USP48-204ENST00000400301 PBRM1Q86U86 1689 aa23.5■■□□□ 1.35
USP48-204ENST00000400301 HSCBQ8IWL3 235 aa23.5■■□□□ 1.35
USP48-204ENST00000400301 ZKSCAN2Q63HK3 967 aa23.5■■□□□ 1.35
USP48-204ENST00000400301 PANK1Q8TE04 598 aa23.5■■□□□ 1.35
USP48-204ENST00000400301 TEX14Q8IWB6 1497 aa23.49■■□□□ 1.35
USP48-204ENST00000400301 HSP90AB1P08238 724 aaKnown RBP23.49■■□□□ 1.35
USP48-204ENST00000400301 TCP11L2Q8N4U5 519 aa23.49■■□□□ 1.35
USP48-204ENST00000400301 DISP3Q9P2K9 1392 aa23.49■■□□□ 1.35
USP48-204ENST00000400301 CYB5RLQ6IPT4 315 aa23.49■■□□□ 1.35
USP48-204ENST00000400301 TARBP1Q13395 1621 aaKnown RBP23.49■■□□□ 1.35
USP48-204ENST00000400301 GGNBP2Q9H3C7 697 aa23.48■■□□□ 1.35
USP48-204ENST00000400301 GOLGA6L22H0YM25 854 aa23.47■■□□□ 1.35
USP48-204ENST00000400301 MFAP1P55081 439 aaKnown RBP23.47■■□□□ 1.35
USP48-204ENST00000400301 EIF4G3O43432 1585 aaKnown RBP23.46■■□□□ 1.35
USP48-204ENST00000400301 CASC1Q6TDU7 716 aa23.46■■□□□ 1.35
USP48-204ENST00000400301 BCAR3O75815 825 aa23.46■■□□□ 1.35
USP48-204ENST00000400301 DHX29Q7Z478 1369 aaKnown RBP23.46■■□□□ 1.35
USP48-204ENST00000400301 USP35Q9P2H5 1018 aa23.45■■□□□ 1.35
USP48-204ENST00000400301 BACH2Q9BYV9 841 aa23.45■■□□□ 1.34
USP48-204ENST00000400301 ELL2O00472 640 aaPredicted RBP23.43■■□□□ 1.34
USP48-204ENST00000400301 HAP1P54257 671 aaPredicted RBP23.43■■□□□ 1.34
USP48-204ENST00000400301 DIAPH1O60610 1272 aaKnown RBP23.42■■□□□ 1.34
USP48-204ENST00000400301 PRAG1Q86YV5 1406 aa23.41■■□□□ 1.34
USP48-204ENST00000400301 KDM6BO15054 1643 aa23.41■■□□□ 1.34
USP48-204ENST00000400301 NUTM2FA1L443 756 aa23.41■■□□□ 1.34
USP48-204ENST00000400301 APBB1O00213 710 aa23.41■■□□□ 1.34
USP48-204ENST00000400301 RIPK4P57078 832 aa23.41■■□□□ 1.34
USP48-204ENST00000400301 GCC2Q8IWJ2 1684 aa23.4■■□□□ 1.34
USP48-204ENST00000400301 DZIP1LQ8IYY4 767 aaKnown RBP23.4■■□□□ 1.34
USP48-204ENST00000400301 FAM135AQ9P2D6 1515 aa23.4■■□□□ 1.34
USP48-204ENST00000400301 SYCP2Q9BX26 1530 aa23.39■■□□□ 1.34
USP48-204ENST00000400301 NUP160Q12769 1436 aa23.39■■□□□ 1.34
USP48-204ENST00000400301 RTF1Q92541 710 aaKnown RBP23.39■■□□□ 1.33
USP48-204ENST00000400301 NCLP19338 710 aaKnown RBP23.39■■□□□ 1.33
USP48-204ENST00000400301 C20orf194Q5TEA3 1177 aa23.39■■□□□ 1.33
USP48-204ENST00000400301 ADGRL2O95490 1459 aa23.39■■□□□ 1.33
USP48-204ENST00000400301 ADGRF5Q8IZF2 1346 aa23.38■■□□□ 1.33
USP48-204ENST00000400301 SHANK2Q9UPX8 1470 aa23.38■■□□□ 1.33
USP48-204ENST00000400301 SLFN5Q08AF3 891 aa23.38■■□□□ 1.33
USP48-204ENST00000400301 RAPGEF3O95398 923 aa23.37■■□□□ 1.33
USP48-204ENST00000400301 TESK2Q96S53 571 aa23.36■■□□□ 1.33
USP48-204ENST00000400301 SKAP1Q86WV1 359 aa23.35■■□□□ 1.33
USP48-204ENST00000400301 PDE3AQ14432 1141 aa23.35■■□□□ 1.33
USP48-204ENST00000400301 LMOD3Q0VAK6 560 aa23.34■■□□□ 1.33
USP48-204ENST00000400301 LMOD2Q6P5Q4 547 aa23.34■■□□□ 1.33
USP48-204ENST00000400301 SPATA31E1Q6ZUB1 1445 aa23.34■■□□□ 1.33
USP48-204ENST00000400301 TRIM44Q96DX7 344 aaPredicted RBP23.34■■□□□ 1.33
USP48-204ENST00000400301 PARD3Q8TEW0 1356 aa23.33■■□□□ 1.33
USP48-204ENST00000400301 DDX19BQ9UMR2 479 aa23.33■■□□□ 1.33
USP48-204ENST00000400301 ARHGEF12Q9NZN5 1544 aa23.33■■□□□ 1.33
USP48-204ENST00000400301 UHRF1BP1Q6BDS2 1440 aa23.32■■□□□ 1.32
USP48-204ENST00000400301 COG3Q96JB2 828 aa23.32■■□□□ 1.32
USP48-204ENST00000400301 PLCH2O75038 1416 aa23.32■■□□□ 1.32
USP48-204ENST00000400301 SCAF11Q99590 1463 aaKnown RBP23.31■■□□□ 1.32
USP48-204ENST00000400301 FAM69CQ0P6D2 419 aa23.31■■□□□ 1.32
USP48-204ENST00000400301 ADGRL1O94910 1474 aa23.31■■□□□ 1.32
USP48-204ENST00000400301 PRAM1Q96QH2 718 aa23.3■■□□□ 1.32
USP48-204ENST00000400301 GZF1Q9H116 711 aaPredicted RBP23.3■■□□□ 1.32
USP48-204ENST00000400301 PER1O15534 1290 aaPredicted RBP23.29■■□□□ 1.32
USP48-204ENST00000400301 NSD3Q9BZ95 1437 aa23.29■■□□□ 1.32
USP48-204ENST00000400301 DUSP27Q5VZP5 1158 aa23.29■■□□□ 1.32
USP48-204ENST00000400301 WWC1Q8IX03 1113 aa23.29■■□□□ 1.32
USP48-204ENST00000400301 HMOX1P09601 288 aa23.28■■□□□ 1.32
USP48-204ENST00000400301 RPGRIP1LQ68CZ1 1315 aa23.27■■□□□ 1.32
USP48-204ENST00000400301 DUOX2Q9NRD8 1548 aa23.27■■□□□ 1.32
USP48-204ENST00000400301 AMER1Q5JTC6 1135 aaPredicted RBP23.27■■□□□ 1.32
USP48-204ENST00000400301 ANKRD45Q5TZF3 282 aa23.27■■□□□ 1.32
USP48-204ENST00000400301 AAMPQ13685 434 aa23.27■■□□□ 1.31
USP48-204ENST00000400301 EXOSC9Q06265 439 aaKnown RBP23.26■■□□□ 1.31
USP48-204ENST00000400301 L1TD1Q5T7N2 865 aaKnown RBP23.26■■□□□ 1.31
USP48-204ENST00000400301 TSR2Q969E8 191 aaKnown RBP23.26■■□□□ 1.31
USP48-204ENST00000400301 TRAPPC8Q9Y2L5 1435 aa23.26■■□□□ 1.31
USP48-204ENST00000400301 GSE1Q14687 1217 aa23.26■■□□□ 1.31
USP48-204ENST00000400301 CEP170Q5SW79 1584 aa23.25■■□□□ 1.31
USP48-204ENST00000400301 SLC52A1Q9NWF4 448 aa23.25■■□□□ 1.31
USP48-204ENST00000400301 FANCAO15360 1455 aa23.25■■□□□ 1.31
USP48-204ENST00000400301 NGDNQ8NEJ9 315 aaKnown RBP23.25■■□□□ 1.31
USP48-204ENST00000400301 WDR63Q8IWG1 891 aa23.24■■□□□ 1.31
USP48-204ENST00000400301 NFKBIBQ15653 356 aa23.23■■□□□ 1.31
USP48-204ENST00000400301 CFAP44Q96MT7 982 aa23.23■■□□□ 1.31
USP48-204ENST00000400301 KIF16BQ96L93 1317 aa23.23■■□□□ 1.31
USP48-204ENST00000400301 SLC4A10Q6U841 1118 aa23.23■■□□□ 1.31
USP48-204ENST00000400301 EID1Q9Y6B2 187 aa23.22■■□□□ 1.31
USP48-204ENST00000400301 PDZRN3Q9UPQ7 1066 aa23.21■■□□□ 1.31
USP48-204ENST00000400301 OS9Q13438 667 aaPredicted RBP23.2■■□□□ 1.31
USP48-204ENST00000400301 STK31Q9BXU1 1019 aa23.2■■□□□ 1.31
USP48-204ENST00000400301 AMPHP49418 695 aa23.2■■□□□ 1.3
USP48-204ENST00000400301 CABP1Q9NZU7 370 aa23.19■■□□□ 1.3
USP48-204ENST00000400301 LRPPRCP42704 1394 aaKnown RBP23.19■■□□□ 1.3
USP48-204ENST00000400301 LNPKQ9C0E8 428 aa23.19■■□□□ 1.3
USP48-204ENST00000400301 CD109Q6YHK3 1445 aa23.19■■□□□ 1.3
USP48-204ENST00000400301 A2MP01023 1474 aa23.18■■□□□ 1.3
USP48-204ENST00000400301 PRKAR2BP31323 418 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms