RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 NEFMP07197 916 aa16.66■□□□□ 0.26
SHMT1-205ENST00000395684 CDCA8Q53HL2 280 aa16.66■□□□□ 0.26
SHMT1-205ENST00000395684 AFAP1Q8N556 730 aa16.65■□□□□ 0.26
SHMT1-205ENST00000395684 ABCC1P33527 1531 aa16.65■□□□□ 0.26
SHMT1-205ENST00000395684 SLFN5Q08AF3 891 aa16.64■□□□□ 0.26
SHMT1-205ENST00000395684 SYNMO15061 1565 aa16.64■□□□□ 0.25
SHMT1-205ENST00000395684 SCAPERQ9BY12 1400 aa16.64■□□□□ 0.25
SHMT1-205ENST00000395684 CENPQQ7L2Z9 268 aaPredicted RBP16.64■□□□□ 0.25
SHMT1-205ENST00000395684 ASXL1Q8IXJ9 1541 aa16.64■□□□□ 0.25
SHMT1-205ENST00000395684 TRPM2O94759 1503 aa16.63■□□□□ 0.25
SHMT1-205ENST00000395684 PTPRTO14522 1441 aa16.63■□□□□ 0.25
SHMT1-205ENST00000395684 SPAG9O60271 1321 aaKnown RBP16.63■□□□□ 0.25
SHMT1-205ENST00000395684 CCDC146Q8IYE0 955 aa16.63■□□□□ 0.25
SHMT1-205ENST00000395684 PIK3C2GO75747 1445 aa16.63■□□□□ 0.25
SHMT1-205ENST00000395684 SPINK5Q9NQ38 1064 aaPredicted RBP16.63■□□□□ 0.25
SHMT1-205ENST00000395684 USP35Q9P2H5 1018 aa16.63■□□□□ 0.25
SHMT1-205ENST00000395684 TRMT2AQ8IZ69 625 aaKnown RBP16.62■□□□□ 0.25
SHMT1-205ENST00000395684 STAC3Q96MF2 364 aa16.62■□□□□ 0.25
SHMT1-205ENST00000395684 SPHKAPQ2M3C7 1700 aa16.61■□□□□ 0.25
SHMT1-205ENST00000395684 NPC1L1Q9UHC9 1359 aa16.61■□□□□ 0.25
SHMT1-205ENST00000395684 DDRGK1Q96HY6 314 aa16.61■□□□□ 0.25
SHMT1-205ENST00000395684 CLTCL1P53675 1640 aa16.6■□□□□ 0.25
SHMT1-205ENST00000395684 PPM1GO15355 546 aaPredicted RBP16.6■□□□□ 0.25
SHMT1-205ENST00000395684 CLASP1Q7Z460 1538 aa16.6■□□□□ 0.25
SHMT1-205ENST00000395684 APAF1O14727 1248 aa16.6■□□□□ 0.25
SHMT1-205ENST00000395684 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.6■□□□□ 0.25
SHMT1-205ENST00000395684 MYOM1P52179 1685 aa16.59■□□□□ 0.25
SHMT1-205ENST00000395684 ZCCHC11Q5TAX3 1644 aaKnown RBP16.59■□□□□ 0.25
SHMT1-205ENST00000395684 CEP152O94986 1710 aa16.59■□□□□ 0.25
SHMT1-205ENST00000395684 C8orf34Q49A92 452 aa16.58■□□□□ 0.25
SHMT1-205ENST00000395684 RTEL1-TNFRSF6BF6WH68 1400 aa16.58■□□□□ 0.24
SHMT1-205ENST00000395684 SLC4A3P48751 1232 aa16.57■□□□□ 0.24
SHMT1-205ENST00000395684 ZFYVE16Q7Z3T8 1539 aa16.57■□□□□ 0.24
SHMT1-205ENST00000395684 FAM161AQ3B820 660 aa16.57■□□□□ 0.24
SHMT1-205ENST00000395684 CFAP70Q5T0N1 1121 aa16.57■□□□□ 0.24
SHMT1-205ENST00000395684 EIF3AQ14152 1382 aaKnown RBP16.57■□□□□ 0.24
SHMT1-205ENST00000395684 BCAR3O75815 825 aa16.56■□□□□ 0.24
SHMT1-205ENST00000395684 CARD14Q9BXL6 1004 aa16.56■□□□□ 0.24
SHMT1-205ENST00000395684 DMRT2Q9Y5R5 561 aa16.55■□□□□ 0.24
SHMT1-205ENST00000395684 NKTRP30414 1462 aaKnown RBP16.55■□□□□ 0.24
SHMT1-205ENST00000395684 RGS3P49796 1198 aa16.53■□□□□ 0.24
SHMT1-205ENST00000395684 UHRF1BP1LA0JNW5 1464 aa16.53■□□□□ 0.24
SHMT1-205ENST00000395684 DEPDC5O75140 1603 aa16.53■□□□□ 0.24
SHMT1-205ENST00000395684 ERVK-7P63135 1459 aa16.53■□□□□ 0.24
SHMT1-205ENST00000395684 ADGRF5Q8IZF2 1346 aa16.53■□□□□ 0.24
SHMT1-205ENST00000395684 KIF3BO15066 747 aa16.53■□□□□ 0.24
SHMT1-205ENST00000395684 TET3O43151 1660 aa16.52■□□□□ 0.24
SHMT1-205ENST00000395684 E9PSI1 815 aa16.52■□□□□ 0.24
SHMT1-205ENST00000395684 KDM5AP29375 1690 aaKnown RBP16.52■□□□□ 0.23
SHMT1-205ENST00000395684 KANK1Q14678 1352 aa16.51■□□□□ 0.23
SHMT1-205ENST00000395684 VWDEQ8N2E2 1590 aa16.5■□□□□ 0.23
SHMT1-205ENST00000395684 UGGT1Q9NYU2 1555 aa16.5■□□□□ 0.23
SHMT1-205ENST00000395684 NFKBIBQ15653 356 aa16.5■□□□□ 0.23
SHMT1-205ENST00000395684 KIAA1210Q9ULL0 1709 aa16.5■□□□□ 0.23
SHMT1-205ENST00000395684 IL27Q8NEV9 243 aa16.5■□□□□ 0.23
SHMT1-205ENST00000395684 IGHDP01880 384 aa16.49■□□□□ 0.23
SHMT1-205ENST00000395684 SLC24A1O60721 1099 aa16.48■□□□□ 0.23
SHMT1-205ENST00000395684 ARAP3Q8WWN8 1544 aa16.48■□□□□ 0.23
SHMT1-205ENST00000395684 ATP7AQ04656 1500 aa16.47■□□□□ 0.23
SHMT1-205ENST00000395684 MAP3K4Q9Y6R4 1608 aa16.47■□□□□ 0.23
SHMT1-205ENST00000395684 DAXXQ9UER7 740 aaPredicted RBP16.47■□□□□ 0.23
SHMT1-205ENST00000395684 ABCA6Q8N139 1617 aa16.47■□□□□ 0.23
SHMT1-205ENST00000395684 MYOM2P54296 1465 aa16.47■□□□□ 0.23
SHMT1-205ENST00000395684 NEURL4Q96JN8 1562 aa16.46■□□□□ 0.23
SHMT1-205ENST00000395684 WWC1Q8IX03 1113 aa16.46■□□□□ 0.23
SHMT1-205ENST00000395684 NGEFQ8N5V2 710 aa16.45■□□□□ 0.22
SHMT1-205ENST00000395684 INO80Q9ULG1 1556 aaPredicted RBP16.45■□□□□ 0.22
SHMT1-205ENST00000395684 POLR3AO14802 1390 aaPredicted RBP16.45■□□□□ 0.22
SHMT1-205ENST00000395684 PDE3AQ14432 1141 aa16.44■□□□□ 0.22
SHMT1-205ENST00000395684 FANCAO15360 1455 aa16.44■□□□□ 0.22
SHMT1-205ENST00000395684 MROH1Q8NDA8 1641 aa16.44■□□□□ 0.22
SHMT1-205ENST00000395684 GSE1Q14687 1217 aa16.43■□□□□ 0.22
SHMT1-205ENST00000395684 PANK1Q8TE04 598 aa16.43■□□□□ 0.22
SHMT1-205ENST00000395684 CENPJQ9HC77 1338 aaPredicted RBP16.43■□□□□ 0.22
SHMT1-205ENST00000395684 COG6Q9Y2V7 657 aa16.43■□□□□ 0.22
SHMT1-205ENST00000395684 CGNL1Q0VF96 1302 aa16.43■□□□□ 0.22
SHMT1-205ENST00000395684 CLUAP1Q96AJ1 413 aa16.42■□□□□ 0.22
SHMT1-205ENST00000395684 SBNO2Q9Y2G9 1366 aa16.41■□□□□ 0.22
SHMT1-205ENST00000395684 TNNT2P45379 298 aaPredicted RBP16.41■□□□□ 0.22
SHMT1-205ENST00000395684 NEUROD2Q15784 382 aa16.41■□□□□ 0.22
SHMT1-205ENST00000395684 USP19O94966 1318 aa16.41■□□□□ 0.22
SHMT1-205ENST00000395684 NRXN1Q9ULB1 1477 aa16.41■□□□□ 0.22
SHMT1-205ENST00000395684 SLC12A5Q9H2X9 1139 aa16.4■□□□□ 0.22
SHMT1-205ENST00000395684 RRP7AQ9Y3A4 280 aaKnown RBP16.4■□□□□ 0.22
SHMT1-205ENST00000395684 ABCA9Q8IUA7 1624 aa16.4■□□□□ 0.22
SHMT1-205ENST00000395684 MORC1Q86VD1 984 aa16.4■□□□□ 0.22
SHMT1-205ENST00000395684 ADGRL1O94910 1474 aa16.39■□□□□ 0.21
SHMT1-205ENST00000395684 NSD3Q9BZ95 1437 aa16.39■□□□□ 0.21
SHMT1-205ENST00000395684 CANXP27824 592 aaKnown RBP16.39■□□□□ 0.21
SHMT1-205ENST00000395684 RTN4Q9NQC3 1192 aaKnown RBP16.39■□□□□ 0.21
SHMT1-205ENST00000395684 TRAK1Q9UPV9 953 aa16.39■□□□□ 0.21
SHMT1-205ENST00000395684 SEC24BO95487 1268 aa16.39■□□□□ 0.21
SHMT1-205ENST00000395684 OSCARQ8IYS5 282 aa16.39■□□□□ 0.21
SHMT1-205ENST00000395684 FRAT1Q92837 279 aaPredicted RBP16.39■□□□□ 0.21
SHMT1-205ENST00000395684 EFCAB6Q5THR3 1501 aa16.39■□□□□ 0.21
SHMT1-205ENST00000395684 NOS1P29475 1434 aa16.38■□□□□ 0.21
SHMT1-205ENST00000395684 KIF1BO60333 1816 aa16.38■□□□□ 0.21
SHMT1-205ENST00000395684 IFT172Q9UG01 1749 aa16.38■□□□□ 0.21
SHMT1-205ENST00000395684 MROH2AA6NES4 1674 aa16.38■□□□□ 0.21
SHMT1-205ENST00000395684 MYO3AQ8NEV4 1616 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms