RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 PNISRQ8TF01 805 aaKnown RBP27.42■■□□□ 1.98
VSX1-202ENST00000376709 MROH2AA6NES4 1674 aa27.42■■□□□ 1.98
VSX1-202ENST00000376709 SCAF11Q99590 1463 aaKnown RBP27.41■■□□□ 1.98
VSX1-202ENST00000376709 CFAP65Q6ZU64 1925 aaKnown RBP27.4■■□□□ 1.98
VSX1-202ENST00000376709 KIAA1210Q9ULL0 1709 aa27.39■■□□□ 1.98
VSX1-202ENST00000376709 CAMSAP1Q5T5Y3 1602 aa27.39■■□□□ 1.98
VSX1-202ENST00000376709 PER1O15534 1290 aaPredicted RBP27.39■■□□□ 1.97
VSX1-202ENST00000376709 PARD3Q8TEW0 1356 aa27.38■■□□□ 1.97
VSX1-202ENST00000376709 ZMYM4Q5VZL5 1548 aa27.37■■□□□ 1.97
VSX1-202ENST00000376709 PANK3Q9H999 370 aa27.36■■□□□ 1.97
VSX1-202ENST00000376709 MYOM2P54296 1465 aa27.36■■□□□ 1.97
VSX1-202ENST00000376709 TSHZ2Q9NRE2 1034 aa27.36■■□□□ 1.97
VSX1-202ENST00000376709 ADGRB3O60242 1522 aa27.36■■□□□ 1.97
VSX1-202ENST00000376709 EIF3AQ14152 1382 aaKnown RBP27.35■■□□□ 1.97
VSX1-202ENST00000376709 IFT172Q9UG01 1749 aa27.34■■□□□ 1.97
VSX1-202ENST00000376709 CHGAP10645 457 aaKnown RBP27.34■■□□□ 1.97
VSX1-202ENST00000376709 NLRP13Q86W25 1043 aa27.34■■□□□ 1.97
VSX1-202ENST00000376709 IRX6P78412 446 aaPredicted RBP27.33■■□□□ 1.97
VSX1-202ENST00000376709 ADGRF5Q8IZF2 1346 aa27.33■■□□□ 1.97
VSX1-202ENST00000376709 SIGLEC1Q9BZZ2 1709 aa27.32■■□□□ 1.96
VSX1-202ENST00000376709 LRPPRCP42704 1394 aaKnown RBP27.31■■□□□ 1.96
VSX1-202ENST00000376709 CDCA8Q53HL2 280 aa27.31■■□□□ 1.96
VSX1-202ENST00000376709 CC2D1BQ5T0F9 858 aaKnown RBP27.31■■□□□ 1.96
VSX1-202ENST00000376709 NOS1P29475 1434 aa27.29■■□□□ 1.96
VSX1-202ENST00000376709 ZC3H13Q5T200 1668 aaKnown RBP27.29■■□□□ 1.96
VSX1-202ENST00000376709 CFAP70Q5T0N1 1121 aa27.28■■□□□ 1.96
VSX1-202ENST00000376709 SMG6Q86US8 1419 aaKnown RBP27.26■■□□□ 1.96
VSX1-202ENST00000376709 SYNMO15061 1565 aa27.26■■□□□ 1.95
VSX1-202ENST00000376709 NRXN1Q9ULB1 1477 aa27.26■■□□□ 1.95
VSX1-202ENST00000376709 ARHGAP31Q2M1Z3 1444 aa27.25■■□□□ 1.95
VSX1-202ENST00000376709 KIF13AQ9H1H9 1805 aa27.24■■□□□ 1.95
VSX1-202ENST00000376709 ERICH6BQ5W0A0 696 aa27.23■■□□□ 1.95
VSX1-202ENST00000376709 SENP3-EIF4A1A0A087X0R7 540 aa27.22■■□□□ 1.95
VSX1-202ENST00000376709 PIK3C2BO00750 1634 aa27.22■■□□□ 1.95
VSX1-202ENST00000376709 PPLO60437 1756 aa27.22■■□□□ 1.95
VSX1-202ENST00000376709 NUDCQ9Y266 331 aa27.22■■□□□ 1.95
VSX1-202ENST00000376709 KNSTRNQ9Y448 316 aa27.2■■□□□ 1.94
VSX1-202ENST00000376709 KDM5AP29375 1690 aaKnown RBP27.2■■□□□ 1.94
VSX1-202ENST00000376709 SLC24A1O60721 1099 aa27.18■■□□□ 1.94
VSX1-202ENST00000376709 MYOM1P52179 1685 aa27.17■■□□□ 1.94
VSX1-202ENST00000376709 REREQ9P2R6 1566 aa27.16■■□□□ 1.94
VSX1-202ENST00000376709 PIK3C2GO75747 1445 aa27.15■■□□□ 1.94
VSX1-202ENST00000376709 RPGRIP1LQ68CZ1 1315 aa27.15■■□□□ 1.94
VSX1-202ENST00000376709 SETBP1Q9Y6X0 1596 aa27.13■■□□□ 1.93
VSX1-202ENST00000376709 PREX1Q8TCU6 1659 aa27.13■■□□□ 1.93
VSX1-202ENST00000376709 IDI1Q13907 227 aa27.13■■□□□ 1.93
VSX1-202ENST00000376709 PPP4R2Q9NY27 417 aa27.12■■□□□ 1.93
VSX1-202ENST00000376709 AGLP35573 1532 aa27.12■■□□□ 1.93
VSX1-202ENST00000376709 ERVK-7P63135 1459 aa27.11■■□□□ 1.93
VSX1-202ENST00000376709 MYO3AQ8NEV4 1616 aa27.11■■□□□ 1.93
VSX1-202ENST00000376709 NEXMIFQ5QGS0 1516 aa27.1■■□□□ 1.93
VSX1-202ENST00000376709 ASXL1Q8IXJ9 1541 aa27.1■■□□□ 1.93
VSX1-202ENST00000376709 NUTM2DQ5VT03 806 aaPredicted RBP27.09■■□□□ 1.93
VSX1-202ENST00000376709 AMER1Q5JTC6 1135 aaPredicted RBP27.09■■□□□ 1.93
VSX1-202ENST00000376709 C14orf93Q9H972 538 aaKnown RBP27.08■■□□□ 1.93
VSX1-202ENST00000376709 SLC52A1Q9NWF4 448 aa27.08■■□□□ 1.93
VSX1-202ENST00000376709 FBXO31Q5XUX0 539 aaPredicted RBP27.08■■□□□ 1.93
VSX1-202ENST00000376709 ARHGEF40Q8TER5 1519 aa27.06■■□□□ 1.92
VSX1-202ENST00000376709 CENPJQ9HC77 1338 aaPredicted RBP27.06■■□□□ 1.92
VSX1-202ENST00000376709 SBNO2Q9Y2G9 1366 aa27.06■■□□□ 1.92
VSX1-202ENST00000376709 ADGRB1O14514 1584 aa27.05■■□□□ 1.92
VSX1-202ENST00000376709 SALL2Q9Y467 1007 aaPredicted RBP27.05■■□□□ 1.92
VSX1-202ENST00000376709 INSRP06213 1382 aa27.04■■□□□ 1.92
VSX1-202ENST00000376709 TRAK1Q9UPV9 953 aa27.04■■□□□ 1.92
VSX1-202ENST00000376709 CLTCQ00610 1675 aaKnown RBP27.03■■□□□ 1.92
VSX1-202ENST00000376709 PPP2R1AP30153 589 aa27.03■■□□□ 1.92
VSX1-202ENST00000376709 MLECQ14165 292 aa27.03■■□□□ 1.92
VSX1-202ENST00000376709 TMEM132EQ6IEE7 984 aa27.03■■□□□ 1.92
VSX1-202ENST00000376709 MYO5BQ9ULV0 1848 aa27.03■■□□□ 1.92
VSX1-202ENST00000376709 VGFO15240 615 aaPredicted RBP27.02■■□□□ 1.92
VSX1-202ENST00000376709 BLMP54132 1417 aaPredicted RBP27.02■■□□□ 1.92
VSX1-202ENST00000376709 TMEM131LA2VDJ0 1609 aa27.01■■□□□ 1.91
VSX1-202ENST00000376709 NPC1L1Q9UHC9 1359 aa27.01■■□□□ 1.91
VSX1-202ENST00000376709 RNF123Q5XPI4 1314 aa27.01■■□□□ 1.91
VSX1-202ENST00000376709 PPP6R1Q9UPN7 881 aa27■■□□□ 1.91
VSX1-202ENST00000376709 QRICH2Q9H0J4 1663 aa27■■□□□ 1.91
VSX1-202ENST00000376709 PDE3BQ13370 1112 aa26.99■■□□□ 1.91
VSX1-202ENST00000376709 WDR43Q15061 677 aaKnown RBP eCLIP26.95■■□□□ 1.9
VSX1-202ENST00000376709 B4GALNT3Q6L9W6 998 aa26.95■■□□□ 1.9
VSX1-202ENST00000376709 SENP3Q9H4L4 574 aaPredicted RBP26.95■■□□□ 1.9
VSX1-202ENST00000376709 ZFYVE9O95405 1425 aa26.94■■□□□ 1.9
VSX1-202ENST00000376709 ADAMTS8Q9UP79 889 aa26.94■■□□□ 1.9
VSX1-202ENST00000376709 CARD14Q9BXL6 1004 aa26.91■■□□□ 1.9
VSX1-202ENST00000376709 RBM19Q9Y4C8 960 aaKnown RBP26.9■■□□□ 1.9
VSX1-202ENST00000376709 SPATA31D1Q6ZQQ2 1576 aa26.9■■□□□ 1.9
VSX1-202ENST00000376709 STAG3Q9UJ98 1225 aa26.88■■□□□ 1.89
VSX1-202ENST00000376709 ARHGEF28Q8N1W1 1705 aaKnown RBP26.88■■□□□ 1.89
VSX1-202ENST00000376709 RCAN3Q9UKA8 241 aa26.87■■□□□ 1.89
VSX1-202ENST00000376709 CDCA7LQ96GN5 454 aa26.87■■□□□ 1.89
VSX1-202ENST00000376709 ESF1Q9H501 851 aaKnown RBP26.84■■□□□ 1.89
VSX1-202ENST00000376709 RRP1P56182 461 aaKnown RBP26.82■■□□□ 1.88
VSX1-202ENST00000376709 SLC12A5Q9H2X9 1139 aa26.82■■□□□ 1.88
VSX1-202ENST00000376709 NSD3Q9BZ95 1437 aa26.82■■□□□ 1.88
VSX1-202ENST00000376709 A2ML1A8K2U0 1454 aa26.82■■□□□ 1.88
VSX1-202ENST00000376709 STK26Q9P289 416 aa26.81■■□□□ 1.88
VSX1-202ENST00000376709 EVC2Q86UK5 1308 aa26.81■■□□□ 1.88
VSX1-202ENST00000376709 ZMYM3Q14202 1370 aa26.8■■□□□ 1.88
VSX1-202ENST00000376709 CCDC136Q96JN2 1154 aa26.8■■□□□ 1.88
VSX1-202ENST00000376709 SAFB2Q14151 953 aaKnown RBP eCLIP26.77■■□□□ 1.88
VSX1-202ENST00000376709 TULP4Q9NRJ4 1543 aa26.77■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms