RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 MAP3K4Q9Y6R4 1608 aa27.95■■■□□ 2.06
CCDC88B-203ENST00000359902 MLH3Q9UHC1 1453 aa27.95■■■□□ 2.06
CCDC88B-203ENST00000359902 KIF1BO60333 1816 aa27.95■■■□□ 2.06
CCDC88B-203ENST00000359902 ADGRF5Q8IZF2 1346 aa27.94■■■□□ 2.06
CCDC88B-203ENST00000359902 EIF3AQ14152 1382 aaKnown RBP27.93■■■□□ 2.06
CCDC88B-203ENST00000359902 CFAP70Q5T0N1 1121 aa27.93■■■□□ 2.06
CCDC88B-203ENST00000359902 INSRP06213 1382 aa27.92■■■□□ 2.06
CCDC88B-203ENST00000359902 FRMPD1Q5SYB0 1578 aa27.91■■■□□ 2.06
CCDC88B-203ENST00000359902 KNSTRNQ9Y448 316 aa27.91■■■□□ 2.06
CCDC88B-203ENST00000359902 SYNMO15061 1565 aa27.91■■■□□ 2.06
CCDC88B-203ENST00000359902 ABCA6Q8N139 1617 aa27.9■■■□□ 2.06
CCDC88B-203ENST00000359902 IFT172Q9UG01 1749 aa27.89■■■□□ 2.06
CCDC88B-203ENST00000359902 ZMYM4Q5VZL5 1548 aa27.89■■■□□ 2.05
CCDC88B-203ENST00000359902 MROH2AA6NES4 1674 aa27.88■■■□□ 2.05
CCDC88B-203ENST00000359902 AMER1Q5JTC6 1135 aaPredicted RBP27.88■■■□□ 2.05
CCDC88B-203ENST00000359902 HECW2Q9P2P5 1572 aa27.88■■■□□ 2.05
CCDC88B-203ENST00000359902 PDE3BQ13370 1112 aa27.87■■■□□ 2.05
CCDC88B-203ENST00000359902 SALL2Q9Y467 1007 aaPredicted RBP27.87■■■□□ 2.05
CCDC88B-203ENST00000359902 BLMP54132 1417 aaPredicted RBP27.86■■■□□ 2.05
CCDC88B-203ENST00000359902 NRXN1Q9ULB1 1477 aa27.86■■■□□ 2.05
CCDC88B-203ENST00000359902 GGT6Q6P531 493 aa27.85■■■□□ 2.05
CCDC88B-203ENST00000359902 NPATQ14207 1427 aa27.85■■■□□ 2.05
CCDC88B-203ENST00000359902 ADGRB3O60242 1522 aa27.83■■■□□ 2.05
CCDC88B-203ENST00000359902 MYOM1P52179 1685 aa27.83■■■□□ 2.05
CCDC88B-203ENST00000359902 SLC24A1O60721 1099 aa27.83■■■□□ 2.04
CCDC88B-203ENST00000359902 PPP2R1AP30153 589 aa27.83■■■□□ 2.04
CCDC88B-203ENST00000359902 ASXL1Q8IXJ9 1541 aa27.81■■■□□ 2.04
CCDC88B-203ENST00000359902 NEO1Q92859 1461 aa27.81■■■□□ 2.04
CCDC88B-203ENST00000359902 NOS1P29475 1434 aa27.8■■■□□ 2.04
CCDC88B-203ENST00000359902 KDM5AP29375 1690 aaKnown RBP27.8■■■□□ 2.04
CCDC88B-203ENST00000359902 ERVK-7P63135 1459 aa27.79■■■□□ 2.04
CCDC88B-203ENST00000359902 RAPGEF3O95398 923 aa27.79■■■□□ 2.04
CCDC88B-203ENST00000359902 CHGAP10645 457 aaKnown RBP27.78■■■□□ 2.04
CCDC88B-203ENST00000359902 NPC1L1Q9UHC9 1359 aa27.78■■■□□ 2.04
CCDC88B-203ENST00000359902 RCAN3Q9UKA8 241 aa27.78■■■□□ 2.04
CCDC88B-203ENST00000359902 ABCC3O15438 1527 aa27.77■■■□□ 2.04
CCDC88B-203ENST00000359902 CDCA7LQ96GN5 454 aa27.76■■■□□ 2.04
CCDC88B-203ENST00000359902 ADAMTS8Q9UP79 889 aa27.76■■■□□ 2.04
CCDC88B-203ENST00000359902 CFAP65Q6ZU64 1925 aaKnown RBP27.76■■■□□ 2.04
CCDC88B-203ENST00000359902 RRP1P56182 461 aaKnown RBP27.75■■■□□ 2.03
CCDC88B-203ENST00000359902 CCDC136Q96JN2 1154 aa27.74■■■□□ 2.03
CCDC88B-203ENST00000359902 SETBP1Q9Y6X0 1596 aa27.73■■■□□ 2.03
CCDC88B-203ENST00000359902 MYO3AQ8NEV4 1616 aa27.72■■■□□ 2.03
CCDC88B-203ENST00000359902 SBNO2Q9Y2G9 1366 aa27.72■■■□□ 2.03
CCDC88B-203ENST00000359902 PPLO60437 1756 aa27.72■■■□□ 2.03
CCDC88B-203ENST00000359902 PIK3C2GO75747 1445 aa27.71■■■□□ 2.03
CCDC88B-203ENST00000359902 C14orf93Q9H972 538 aaKnown RBP27.71■■■□□ 2.03
CCDC88B-203ENST00000359902 RPGRIP1LQ68CZ1 1315 aa27.7■■■□□ 2.02
CCDC88B-203ENST00000359902 DIP2CQ9Y2E4 1556 aa27.68■■■□□ 2.02
CCDC88B-203ENST00000359902 CAMSAP1Q5T5Y3 1602 aa27.68■■■□□ 2.02
CCDC88B-203ENST00000359902 WDR43Q15061 677 aaKnown RBP eCLIP27.68■■■□□ 2.02
CCDC88B-203ENST00000359902 CENPJQ9HC77 1338 aaPredicted RBP27.67■■■□□ 2.02
CCDC88B-203ENST00000359902 CARD14Q9BXL6 1004 aa27.67■■■□□ 2.02
CCDC88B-203ENST00000359902 FANCIQ9NVI1 1328 aa27.67■■■□□ 2.02
CCDC88B-203ENST00000359902 SIGLEC1Q9BZZ2 1709 aa27.65■■■□□ 2.02
CCDC88B-203ENST00000359902 ADGRB1O14514 1584 aa27.64■■■□□ 2.02
CCDC88B-203ENST00000359902 ANP32EQ9BTT0 268 aa27.64■■■□□ 2.02
CCDC88B-203ENST00000359902 TRAK1Q9UPV9 953 aa27.64■■■□□ 2.02
CCDC88B-203ENST00000359902 RICTORQ6R327 1708 aa27.63■■■□□ 2.01
CCDC88B-203ENST00000359902 EXOC6Q8TAG9 804 aa27.61■■■□□ 2.01
CCDC88B-203ENST00000359902 PIK3C2BO00750 1634 aa27.61■■■□□ 2.01
CCDC88B-203ENST00000359902 TMEM132EQ6IEE7 984 aa27.61■■■□□ 2.01
CCDC88B-203ENST00000359902 ARHGAP31Q2M1Z3 1444 aa27.59■■■□□ 2.01
CCDC88B-203ENST00000359902 PLEKHH1Q9ULM0 1364 aa27.59■■■□□ 2.01
CCDC88B-203ENST00000359902 YEATS2Q9ULM3 1422 aa27.57■■■□□ 2
CCDC88B-203ENST00000359902 MSH5O43196 834 aa27.57■■■□□ 2
CCDC88B-203ENST00000359902 ZC3H13Q5T200 1668 aaKnown RBP27.56■■■□□ 2
CCDC88B-203ENST00000359902 ZNF521Q96K83 1311 aa27.56■■■□□ 2
CCDC88B-203ENST00000359902 QRICH2Q9H0J4 1663 aa27.55■■■□□ 2
CCDC88B-203ENST00000359902 VGFO15240 615 aaPredicted RBP27.55■■■□□ 2
CCDC88B-203ENST00000359902 CYB5RLQ6IPT4 315 aa27.54■■■□□ 2
CCDC88B-203ENST00000359902 NEXMIFQ5QGS0 1516 aa27.54■■■□□ 2
CCDC88B-203ENST00000359902 GLI2P10070 1586 aa27.52■■■□□ 2
CCDC88B-203ENST00000359902 IDI1Q13907 227 aa27.52■■■□□ 2
CCDC88B-203ENST00000359902 NUTM2DQ5VT03 806 aaPredicted RBP27.52■■■□□ 2
CCDC88B-203ENST00000359902 PLIN1O60240 522 aa27.5■■□□□ 1.99
CCDC88B-203ENST00000359902 DUSP27Q5VZP5 1158 aa27.5■■□□□ 1.99
CCDC88B-203ENST00000359902 SLC12A5Q9H2X9 1139 aa27.5■■□□□ 1.99
CCDC88B-203ENST00000359902 GOLGA2Q08379 1002 aa27.49■■□□□ 1.99
CCDC88B-203ENST00000359902 SLC52A1Q9NWF4 448 aa27.49■■□□□ 1.99
CCDC88B-203ENST00000359902 CCDC146Q8IYE0 955 aa27.48■■□□□ 1.99
CCDC88B-203ENST00000359902 NSD3Q9BZ95 1437 aa27.47■■□□□ 1.99
CCDC88B-203ENST00000359902 ZFYVE9O95405 1425 aa27.44■■□□□ 1.98
CCDC88B-203ENST00000359902 PUS7Q96PZ0 661 aaKnown RBP27.44■■□□□ 1.98
CCDC88B-203ENST00000359902 POLR3AO14802 1390 aaPredicted RBP27.43■■□□□ 1.98
CCDC88B-203ENST00000359902 APAF1O14727 1248 aa27.43■■□□□ 1.98
CCDC88B-203ENST00000359902 SLFN5Q08AF3 891 aa27.43■■□□□ 1.98
CCDC88B-203ENST00000359902 ARHGEF28Q8N1W1 1705 aaKnown RBP27.42■■□□□ 1.98
CCDC88B-203ENST00000359902 MORC1Q86VD1 984 aa27.41■■□□□ 1.98
CCDC88B-203ENST00000359902 TRMT2AQ8IZ69 625 aaKnown RBP27.41■■□□□ 1.98
CCDC88B-203ENST00000359902 EVC2Q86UK5 1308 aa27.41■■□□□ 1.98
CCDC88B-203ENST00000359902 CRBNQ96SW2 442 aa27.41■■□□□ 1.98
CCDC88B-203ENST00000359902 FAM69CQ0P6D2 419 aa27.4■■□□□ 1.98
CCDC88B-203ENST00000359902 PREX1Q8TCU6 1659 aa27.4■■□□□ 1.98
CCDC88B-203ENST00000359902 TULP4Q9NRJ4 1543 aa27.39■■□□□ 1.97
CCDC88B-203ENST00000359902 TMEM131LA2VDJ0 1609 aa27.37■■□□□ 1.97
CCDC88B-203ENST00000359902 USP32Q8NFA0 1604 aa27.37■■□□□ 1.97
CCDC88B-203ENST00000359902 C20orf194Q5TEA3 1177 aa27.36■■□□□ 1.97
CCDC88B-203ENST00000359902 MYO5BQ9ULV0 1848 aa27.36■■□□□ 1.97
CCDC88B-203ENST00000359902 NGEFQ8N5V2 710 aa27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms