RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 LTV1Q96GA3 475 aaPredicted RBP18.13■□□□□ 0.49
CHD4-201ENST00000357008 C22orf23Q9BZE7 217 aa18.13■□□□□ 0.49
CHD4-201ENST00000357008 CPLX2Q6PUV4 134 aaKnown RBP18.13■□□□□ 0.49
CHD4-201ENST00000357008 MRE11P49959 708 aa18.13■□□□□ 0.49
CHD4-201ENST00000357008 COG3Q96JB2 828 aa18.12■□□□□ 0.49
CHD4-201ENST00000357008 CCDC7Q96M83 1385 aa18.12■□□□□ 0.49
CHD4-201ENST00000357008 LRRFIP1Q32MZ4 808 aaKnown RBP18.12■□□□□ 0.49
CHD4-201ENST00000357008 INTS3Q68E01 1043 aaKnown RBP18.12■□□□□ 0.49
CHD4-201ENST00000357008 ROCK1Q13464 1354 aa18.11■□□□□ 0.49
CHD4-201ENST00000357008 EID1Q9Y6B2 187 aa18.11■□□□□ 0.49
CHD4-201ENST00000357008 TPM2P07951 284 aa18.11■□□□□ 0.49
CHD4-201ENST00000357008 AKAP17AQ02040 695 aaKnown RBP18.11■□□□□ 0.49
CHD4-201ENST00000357008 TEX35Q5T0J7 233 aa18.11■□□□□ 0.49
CHD4-201ENST00000357008 MARCH6O60337 910 aa18.11■□□□□ 0.49
CHD4-201ENST00000357008 TMX4Q9H1E5 349 aaPredicted RBP18.1■□□□□ 0.49
CHD4-201ENST00000357008 RUNDC1Q96C34 613 aa18.09■□□□□ 0.49
CHD4-201ENST00000357008 BICD2Q8TD16 824 aa18.09■□□□□ 0.49
CHD4-201ENST00000357008 VGFO15240 615 aaPredicted RBP18.09■□□□□ 0.49
CHD4-201ENST00000357008 SYNE3Q6ZMZ3 975 aa18.09■□□□□ 0.49
CHD4-201ENST00000357008 CNTLNQ9NXG0 1405 aa18.09■□□□□ 0.49
CHD4-201ENST00000357008 ANO2Q9NQ90 1003 aa18.09■□□□□ 0.49
CHD4-201ENST00000357008 DIAPH1O60610 1272 aaKnown RBP18.09■□□□□ 0.49
CHD4-201ENST00000357008 KIF7Q2M1P5 1343 aa18.08■□□□□ 0.49
CHD4-201ENST00000357008 PDE4CQ08493 712 aa18.08■□□□□ 0.49
CHD4-201ENST00000357008 RIPK4P57078 832 aa18.08■□□□□ 0.48
CHD4-201ENST00000357008 RNF20Q5VTR2 975 aa18.08■□□□□ 0.48
CHD4-201ENST00000357008 HOMER1Q86YM7 354 aa18.08■□□□□ 0.48
CHD4-201ENST00000357008 FRAT2O75474 233 aaPredicted RBP18.08■□□□□ 0.48
CHD4-201ENST00000357008 IPO7O95373 1038 aaKnown RBP18.07■□□□□ 0.48
CHD4-201ENST00000357008 WIZO95785 1651 aa18.07■□□□□ 0.48
CHD4-201ENST00000357008 SMC3Q9UQE7 1217 aa18.07■□□□□ 0.48
CHD4-201ENST00000357008 TRIM29Q14134 588 aa18.06■□□□□ 0.48
CHD4-201ENST00000357008 IFIT2P09913 472 aaKnown RBP18.06■□□□□ 0.48
CHD4-201ENST00000357008 NEXNQ0ZGT2 675 aa18.06■□□□□ 0.48
CHD4-201ENST00000357008 SASS6Q6UVJ0 657 aa18.06■□□□□ 0.48
CHD4-201ENST00000357008 LNPKQ9C0E8 428 aa18.05■□□□□ 0.48
CHD4-201ENST00000357008 MTERF4Q7Z6M4 381 aaKnown RBP18.05■□□□□ 0.48
CHD4-201ENST00000357008 ANKRD20A12PQ8NF67 263 aa18.05■□□□□ 0.48
CHD4-201ENST00000357008 C9orf78Q9NZ63 289 aaPredicted RBP18.05■□□□□ 0.48
CHD4-201ENST00000357008 TEFQ10587 303 aa18.05■□□□□ 0.48
CHD4-201ENST00000357008 MAP7D2Q96T17 732 aa18.05■□□□□ 0.48
CHD4-201ENST00000357008 NASPP49321 788 aaPredicted RBP18.05■□□□□ 0.48
CHD4-201ENST00000357008 HOOK1Q9UJC3 728 aaKnown RBP18.04■□□□□ 0.48
CHD4-201ENST00000357008 CCDC9Q9Y3X0 531 aaKnown RBP18.04■□□□□ 0.48
CHD4-201ENST00000357008 VPS37CA5D8V6 355 aaPredicted RBP18.04■□□□□ 0.48
CHD4-201ENST00000357008 CCDC39Q9UFE4 941 aa18.04■□□□□ 0.48
CHD4-201ENST00000357008 NUTM2FA1L443 756 aa18.04■□□□□ 0.48
CHD4-201ENST00000357008 CPLX1O14810 134 aa18.04■□□□□ 0.48
CHD4-201ENST00000357008 C1orf141Q5JVX7 400 aa18.04■□□□□ 0.48
CHD4-201ENST00000357008 BRD4O60885 1362 aaPredicted RBP18.03■□□□□ 0.48
CHD4-201ENST00000357008 RUSC2Q8N2Y8 1516 aa18.03■□□□□ 0.48
CHD4-201ENST00000357008 ARGLU1Q9NWB6 273 aaPredicted RBP18.03■□□□□ 0.48
CHD4-201ENST00000357008 IFT57Q9NWB7 429 aa18.02■□□□□ 0.48
CHD4-201ENST00000357008 CDC45O75419 566 aa18.02■□□□□ 0.47
CHD4-201ENST00000357008 JPH4Q96JJ6 628 aa18.02■□□□□ 0.47
CHD4-201ENST00000357008 GNAI1P63096 354 aa18.01■□□□□ 0.47
CHD4-201ENST00000357008 TRAK2O60296 914 aa18.01■□□□□ 0.47
CHD4-201ENST00000357008 GTF2E1P29083 439 aaPredicted RBP18.01■□□□□ 0.47
CHD4-201ENST00000357008 CADPSQ9ULU8 1353 aa18.01■□□□□ 0.47
CHD4-201ENST00000357008 PANK1Q8TE04 598 aa18.01■□□□□ 0.47
CHD4-201ENST00000357008 R3HCC1Q9Y3T6 440 aaKnown RBP18.01■□□□□ 0.47
CHD4-201ENST00000357008 HSP90AB4PQ58FF6 505 aa18■□□□□ 0.47
CHD4-201ENST00000357008 CCDC73Q6ZRK6 1079 aa18■□□□□ 0.47
CHD4-201ENST00000357008 CCDC47Q96A33 483 aaKnown RBP18■□□□□ 0.47
CHD4-201ENST00000357008 VPS53Q5VIR6 699 aa18■□□□□ 0.47
CHD4-201ENST00000357008 TRHP20396 242 aaPredicted RBP18■□□□□ 0.47
CHD4-201ENST00000357008 EIF2S2P20042 333 aaKnown RBP17.99■□□□□ 0.47
CHD4-201ENST00000357008 FKBP5Q13451 457 aaPredicted RBP17.99■□□□□ 0.47
CHD4-201ENST00000357008 MNS1Q8NEH6 495 aa17.99■□□□□ 0.47
CHD4-201ENST00000357008 STAC3Q96MF2 364 aa17.99■□□□□ 0.47
CHD4-201ENST00000357008 MINK1Q8N4C8 1332 aaPredicted RBP17.98■□□□□ 0.47
CHD4-201ENST00000357008 PCMTD1Q96MG8 357 aaPredicted RBP17.98■□□□□ 0.47
CHD4-201ENST00000357008 MIA2Q96PC5 1412 aa17.98■□□□□ 0.47
CHD4-201ENST00000357008 G3BP1Q13283 466 aaKnown RBP eCLIP17.98■□□□□ 0.477e-7■■■□□ 15.8
CHD4-201ENST00000357008 G3V3G9 751 aa17.98■□□□□ 0.47
CHD4-201ENST00000357008 ERC2O15083 957 aa17.98■□□□□ 0.47
CHD4-201ENST00000357008 DCAF8Q5TAQ9 597 aa17.98■□□□□ 0.47
CHD4-201ENST00000357008 TRDNQ13061 729 aa17.98■□□□□ 0.47
CHD4-201ENST00000357008 MYOM3Q5VTT5 1437 aa17.97■□□□□ 0.47
CHD4-201ENST00000357008 DDX58O95786 925 aaKnown RBP17.97■□□□□ 0.47
CHD4-201ENST00000357008 ACBD3Q9H3P7 528 aa17.97■□□□□ 0.47
CHD4-201ENST00000357008 MBD3O95983 291 aa17.96■□□□□ 0.47
CHD4-201ENST00000357008 WASHC2AQ641Q2 1341 aa17.96■□□□□ 0.47
CHD4-201ENST00000357008 LETM1O95202 739 aaPredicted RBP17.95■□□□□ 0.46
CHD4-201ENST00000357008 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.94■□□□□ 0.46
CHD4-201ENST00000357008 FGD6Q6ZV73 1430 aa17.94■□□□□ 0.46
CHD4-201ENST00000357008 TTC5Q8N0Z6 440 aa17.94■□□□□ 0.46
CHD4-201ENST00000357008 NAT10Q9H0A0 1025 aaKnown RBP17.94■□□□□ 0.46
CHD4-201ENST00000357008 ADAMTS8Q9UP79 889 aa17.94■□□□□ 0.46
CHD4-201ENST00000357008 APPP05067 770 aa17.94■□□□□ 0.46
CHD4-201ENST00000357008 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.94■□□□□ 0.46
CHD4-201ENST00000357008 BRPF3Q9ULD4 1205 aa17.93■□□□□ 0.46
CHD4-201ENST00000357008 RNF214Q8ND24 703 aa17.93■□□□□ 0.46
CHD4-201ENST00000357008 NECTIN2Q92692 538 aa17.92■□□□□ 0.46
CHD4-201ENST00000357008 HSP90B2PQ58FF3 399 aa17.92■□□□□ 0.46
CHD4-201ENST00000357008 NOM1Q5C9Z4 860 aaKnown RBP17.92■□□□□ 0.46
CHD4-201ENST00000357008 CAVIN1Q6NZI2 390 aaKnown RBP17.92■□□□□ 0.46
CHD4-201ENST00000357008 CCDC173Q0VFZ6 552 aa17.92■□□□□ 0.46
CHD4-201ENST00000357008 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.91■□□□□ 0.46
CHD4-201ENST00000357008 AK7Q96M32 723 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms