RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 KDM5AP29375 1690 aaKnown RBP25.71■■□□□ 1.71
SMARCD3-202ENST00000356800 KIAA1210Q9ULL0 1709 aa25.71■■□□□ 1.71
SMARCD3-202ENST00000356800 NBPF1Q3BBV0 1214 aa25.7■■□□□ 1.7
SMARCD3-202ENST00000356800 UBR1Q8IWV7 1749 aa25.69■■□□□ 1.7
SMARCD3-202ENST00000356800 ROCK2O75116 1388 aaKnown RBP25.69■■□□□ 1.7
SMARCD3-202ENST00000356800 GPRASP1Q5JY77 1395 aa25.69■■□□□ 1.7
SMARCD3-202ENST00000356800 HSPA5P11021 654 aaKnown RBP25.69■■□□□ 1.7
SMARCD3-202ENST00000356800 PLPPR3Q6T4P5 718 aa25.69■■□□□ 1.7
SMARCD3-202ENST00000356800 LAMC1P11047 1609 aa25.68■■□□□ 1.7
SMARCD3-202ENST00000356800 NLRP1Q9C000 1473 aa25.68■■□□□ 1.7
SMARCD3-202ENST00000356800 EIF4G2P78344 907 aaKnown RBP eCLIP25.68■■□□□ 1.7
SMARCD3-202ENST00000356800 STAG3Q9UJ98 1225 aa25.68■■□□□ 1.7
SMARCD3-202ENST00000356800 CARD11Q9BXL7 1154 aa25.66■■□□□ 1.7
SMARCD3-202ENST00000356800 PIK3C2GO75747 1445 aa25.66■■□□□ 1.7
SMARCD3-202ENST00000356800 ZFYVE9O95405 1425 aa25.66■■□□□ 1.7
SMARCD3-202ENST00000356800 NUTM2DQ5VT03 806 aaPredicted RBP25.65■■□□□ 1.7
SMARCD3-202ENST00000356800 MYO3AQ8NEV4 1616 aa25.65■■□□□ 1.7
SMARCD3-202ENST00000356800 USP47Q96K76 1375 aa25.64■■□□□ 1.7
SMARCD3-202ENST00000356800 VGFO15240 615 aaPredicted RBP25.62■■□□□ 1.69
SMARCD3-202ENST00000356800 CFAP70Q5T0N1 1121 aa25.61■■□□□ 1.69
SMARCD3-202ENST00000356800 RIMS2Q9UQ26 1411 aa25.6■■□□□ 1.69
SMARCD3-202ENST00000356800 PTPRMP28827 1452 aa25.59■■□□□ 1.69
SMARCD3-202ENST00000356800 IQGAP1P46940 1657 aa25.59■■□□□ 1.69
SMARCD3-202ENST00000356800 DIEXFQ68CQ4 756 aaKnown RBP25.56■■□□□ 1.68
SMARCD3-202ENST00000356800 C14orf93Q9H972 538 aaKnown RBP25.56■■□□□ 1.68
SMARCD3-202ENST00000356800 SETD1BQ9UPS6 1966 aaKnown RBP25.56■■□□□ 1.68
SMARCD3-202ENST00000356800 SETBP1Q9Y6X0 1596 aa25.55■■□□□ 1.68
SMARCD3-202ENST00000356800 TMEM2Q9UHN6 1383 aa25.54■■□□□ 1.68
SMARCD3-202ENST00000356800 CEP170BQ9Y4F5 1589 aaPredicted RBP25.54■■□□□ 1.68
SMARCD3-202ENST00000356800 ADGRB1O14514 1584 aa25.53■■□□□ 1.68
SMARCD3-202ENST00000356800 ZNF142P52746 1687 aaPredicted RBP25.52■■□□□ 1.68
SMARCD3-202ENST00000356800 SCAF11Q99590 1463 aaKnown RBP25.5■■□□□ 1.67
SMARCD3-202ENST00000356800 ST20-MTHFSA0A0A6YYL1 179 aa25.5■■□□□ 1.67
SMARCD3-202ENST00000356800 POLR1AO95602 1720 aaPredicted RBP25.5■■□□□ 1.67
SMARCD3-202ENST00000356800 SLIT1O75093 1534 aa25.49■■□□□ 1.67
SMARCD3-202ENST00000356800 NRXN3Q9Y4C0 1643 aa25.49■■□□□ 1.67
SMARCD3-202ENST00000356800 ARHGAP23Q9P227 1491 aa25.49■■□□□ 1.67
SMARCD3-202ENST00000356800 C11orf95C9JLR9 678 aaPredicted RBP25.48■■□□□ 1.67
SMARCD3-202ENST00000356800 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.48■■□□□ 1.67
SMARCD3-202ENST00000356800 SENP3Q9H4L4 574 aaPredicted RBP25.48■■□□□ 1.67
SMARCD3-202ENST00000356800 ALKQ9UM73 1620 aa25.48■■□□□ 1.67
SMARCD3-202ENST00000356800 ASXL1Q8IXJ9 1541 aa25.48■■□□□ 1.67
SMARCD3-202ENST00000356800 SETD1AO15047 1707 aaKnown RBP25.48■■□□□ 1.67
SMARCD3-202ENST00000356800 WASHC2AQ641Q2 1341 aa25.45■■□□□ 1.67
SMARCD3-202ENST00000356800 TMEM132EQ6IEE7 984 aa25.45■■□□□ 1.66
SMARCD3-202ENST00000356800 HDGFP51858 240 aaKnown RBP25.44■■□□□ 1.66
SMARCD3-202ENST00000356800 THEMISQ8N1K5 641 aaPredicted RBP25.44■■□□□ 1.66
SMARCD3-202ENST00000356800 KDM4FA0A1W2PPD8 638 aa25.43■■□□□ 1.66
SMARCD3-202ENST00000356800 LTKP29376 864 aa25.43■■□□□ 1.66
SMARCD3-202ENST00000356800 CCDC7Q96M83 1385 aa25.41■■□□□ 1.66
SMARCD3-202ENST00000356800 TESK2Q96S53 571 aa25.4■■□□□ 1.66
SMARCD3-202ENST00000356800 TXNDC2Q86VQ3 553 aa25.39■■□□□ 1.66
SMARCD3-202ENST00000356800 KIF7Q2M1P5 1343 aa25.39■■□□□ 1.65
SMARCD3-202ENST00000356800 PLEKHG1Q9ULL1 1385 aa25.38■■□□□ 1.65
SMARCD3-202ENST00000356800 ARHGEF28Q8N1W1 1705 aaKnown RBP25.38■■□□□ 1.65
SMARCD3-202ENST00000356800 EIF3AQ14152 1382 aaKnown RBP25.37■■□□□ 1.65
SMARCD3-202ENST00000356800 DDX10Q13206 875 aaKnown RBP25.37■■□□□ 1.65
SMARCD3-202ENST00000356800 EID1Q9Y6B2 187 aa25.36■■□□□ 1.65
SMARCD3-202ENST00000356800 TRAK1Q9UPV9 953 aa25.36■■□□□ 1.65
SMARCD3-202ENST00000356800 ADAMTS13Q76LX8 1427 aa25.35■■□□□ 1.65
SMARCD3-202ENST00000356800 YTHDC2Q9H6S0 1430 aaKnown RBP25.34■■□□□ 1.65
SMARCD3-202ENST00000356800 QRICH2Q9H0J4 1663 aa25.31■■□□□ 1.64
SMARCD3-202ENST00000356800 MED14O60244 1454 aa25.31■■□□□ 1.64
SMARCD3-202ENST00000356800 METP08581 1390 aa25.31■■□□□ 1.64
SMARCD3-202ENST00000356800 DISP3Q9P2K9 1392 aa25.31■■□□□ 1.64
SMARCD3-202ENST00000356800 BCANQ96GW7 911 aa25.29■■□□□ 1.64
SMARCD3-202ENST00000356800 STK26Q9P289 416 aa25.29■■□□□ 1.64
SMARCD3-202ENST00000356800 CENPJQ9HC77 1338 aaPredicted RBP25.28■■□□□ 1.64
SMARCD3-202ENST00000356800 LRPPRCP42704 1394 aaKnown RBP25.27■■□□□ 1.64
SMARCD3-202ENST00000356800 SBNO2Q9Y2G9 1366 aa25.26■■□□□ 1.63
SMARCD3-202ENST00000356800 TMF1P82094 1093 aa25.25■■□□□ 1.63
SMARCD3-202ENST00000356800 DLC1Q96QB1 1528 aa25.25■■□□□ 1.63
SMARCD3-202ENST00000356800 KNDC1Q76NI1 1749 aa25.24■■□□□ 1.63
SMARCD3-202ENST00000356800 ANKLE2Q86XL3 938 aa25.24■■□□□ 1.63
SMARCD3-202ENST00000356800 DIP2AQ14689 1571 aa25.24■■□□□ 1.63
SMARCD3-202ENST00000356800 SLC26A8Q96RN1 970 aa25.23■■□□□ 1.63
SMARCD3-202ENST00000356800 POLR3GLQ9BT43 218 aa25.23■■□□□ 1.63
SMARCD3-202ENST00000356800 ABCC11Q96J66 1382 aa25.23■■□□□ 1.63
SMARCD3-202ENST00000356800 TBX22Q9Y458 520 aa25.21■■□□□ 1.63
SMARCD3-202ENST00000356800 TECPR2O15040 1411 aa25.19■■□□□ 1.62
SMARCD3-202ENST00000356800 PTPRUQ92729 1446 aa25.19■■□□□ 1.62
SMARCD3-202ENST00000356800 CPS1P31327 1500 aa25.18■■□□□ 1.62
SMARCD3-202ENST00000356800 PRAM1Q96QH2 718 aa25.18■■□□□ 1.62
SMARCD3-202ENST00000356800 MIER1Q8N108 512 aa25.17■■□□□ 1.62
SMARCD3-202ENST00000356800 SLC24A1O60721 1099 aa25.16■■□□□ 1.62
SMARCD3-202ENST00000356800 SAFB2Q14151 953 aaKnown RBP eCLIP25.16■■□□□ 1.62
SMARCD3-202ENST00000356800 TULP4Q9NRJ4 1543 aa25.15■■□□□ 1.62
SMARCD3-202ENST00000356800 PLEKHH1Q9ULM0 1364 aa25.15■■□□□ 1.62
SMARCD3-202ENST00000356800 NPHP4O75161 1426 aaPredicted RBP25.15■■□□□ 1.62
SMARCD3-202ENST00000356800 LMTK3Q96Q04 1460 aa25.14■■□□□ 1.62
SMARCD3-202ENST00000356800 NCKAP5LQ9HCH0 1330 aa25.14■■□□□ 1.61
SMARCD3-202ENST00000356800 MYOM1P52179 1685 aa25.14■■□□□ 1.61
SMARCD3-202ENST00000356800 POGKQ9P215 609 aa25.13■■□□□ 1.61
SMARCD3-202ENST00000356800 WAPLQ7Z5K2 1190 aa25.13■■□□□ 1.61
SMARCD3-202ENST00000356800 FAM135BQ49AJ0 1406 aa25.12■■□□□ 1.61
SMARCD3-202ENST00000356800 XRN1Q8IZH2 1706 aaKnown RBP25.12■■□□□ 1.61
SMARCD3-202ENST00000356800 CDCA8Q53HL2 280 aa25.12■■□□□ 1.61
SMARCD3-202ENST00000356800 SIRT1Q96EB6 747 aa25.12■■□□□ 1.61
SMARCD3-202ENST00000356800 ROBO2Q9HCK4 1378 aa25.11■■□□□ 1.61
SMARCD3-202ENST00000356800 CHD2O14647 1828 aaKnown RBP25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms