RNA–Protein interactions for RNA: ENST00000346436.10

CLCN6-202, Transcript of chloride voltage-gated channel 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN6, Length 5,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-202ENST00000346436 GRIN2BQ13224 1484 aa13.63□□□□□ -0.23
CLCN6-202ENST00000346436 GNL2Q13823 731 aaKnown RBP13.63□□□□□ -0.23
CLCN6-202ENST00000346436 COG6Q9Y2V7 657 aa13.63□□□□□ -0.23
CLCN6-202ENST00000346436 APBB1O00213 710 aa13.62□□□□□ -0.23
CLCN6-202ENST00000346436 RAPGEF4Q8WZA2 1011 aa13.62□□□□□ -0.23
CLCN6-202ENST00000346436 MFAP1P55081 439 aaKnown RBP13.62□□□□□ -0.23
CLCN6-202ENST00000346436 IFT140Q96RY7 1462 aa13.62□□□□□ -0.23
CLCN6-202ENST00000346436 PIP4K2BP78356 416 aa13.62□□□□□ -0.23
CLCN6-202ENST00000346436 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.62□□□□□ -0.23
CLCN6-202ENST00000346436 ADAMTS8Q9UP79 889 aa13.62□□□□□ -0.23
CLCN6-202ENST00000346436 PNISRQ8TF01 805 aaKnown RBP13.61□□□□□ -0.23
CLCN6-202ENST00000346436 KIAA1211Q6ZU35 1233 aa13.61□□□□□ -0.23
CLCN6-202ENST00000346436 PTPRKQ15262 1439 aa13.61□□□□□ -0.23
CLCN6-202ENST00000346436 SUPT6HQ7KZ85 1726 aaKnown RBP13.61□□□□□ -0.23
CLCN6-202ENST00000346436 NAP1L5Q96NT1 182 aaPredicted RBP13.61□□□□□ -0.23
CLCN6-202ENST00000346436 SKAP1Q86WV1 359 aa13.6□□□□□ -0.23
CLCN6-202ENST00000346436 DAPK1P53355 1430 aa13.6□□□□□ -0.23
CLCN6-202ENST00000346436 NCBP3Q53F19 620 aaKnown RBP13.6□□□□□ -0.23
CLCN6-202ENST00000346436 TXNDC2Q86VQ3 553 aa13.6□□□□□ -0.23
CLCN6-202ENST00000346436 CENPQQ7L2Z9 268 aaPredicted RBP13.6□□□□□ -0.23
CLCN6-202ENST00000346436 HSCBQ8IWL3 235 aa13.6□□□□□ -0.23
CLCN6-202ENST00000346436 SMC4Q9NTJ3 1288 aa13.59□□□□□ -0.23
CLCN6-202ENST00000346436 HSP90B1P14625 803 aaKnown RBP13.59□□□□□ -0.23
CLCN6-202ENST00000346436 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.59□□□□□ -0.23
CLCN6-202ENST00000346436 FAM161AQ3B820 660 aa13.59□□□□□ -0.23
CLCN6-202ENST00000346436 DNMBPQ6XZF7 1577 aa13.58□□□□□ -0.23
CLCN6-202ENST00000346436 RWDD1Q9H446 243 aaPredicted RBP13.58□□□□□ -0.24
CLCN6-202ENST00000346436 NUTM2BA6NNL0 878 aaPredicted RBP13.58□□□□□ -0.24
CLCN6-202ENST00000346436 NUTM2EB1AL46 878 aaPredicted RBP13.58□□□□□ -0.24
CLCN6-202ENST00000346436 NUTM2AQ8IVF1 878 aaPredicted RBP13.58□□□□□ -0.24
CLCN6-202ENST00000346436 RBM33Q96EV2 1170 aaKnown RBP13.58□□□□□ -0.24
CLCN6-202ENST00000346436 HMMRO75330 724 aa13.57□□□□□ -0.24
CLCN6-202ENST00000346436 PTPN23Q9H3S7 1636 aa13.57□□□□□ -0.24
CLCN6-202ENST00000346436 GOLGA6L6A8MZA4 724 aa13.57□□□□□ -0.24
CLCN6-202ENST00000346436 NEXNQ0ZGT2 675 aa13.57□□□□□ -0.24
CLCN6-202ENST00000346436 STAC3Q96MF2 364 aa13.57□□□□□ -0.24
CLCN6-202ENST00000346436 FOXD4L1Q9NU39 408 aa13.57□□□□□ -0.24
CLCN6-202ENST00000346436 EPRSP07814 1512 aaKnown RBP13.57□□□□□ -0.24
CLCN6-202ENST00000346436 ABCA10Q8WWZ4 1543 aa13.57□□□□□ -0.24
CLCN6-202ENST00000346436 PPP1R1BQ9UD71 204 aaPredicted RBP13.57□□□□□ -0.24
CLCN6-202ENST00000346436 KIAA1107Q9UPP5 1409 aa13.56□□□□□ -0.24
CLCN6-202ENST00000346436 BRD4O60885 1362 aaPredicted RBP13.56□□□□□ -0.24
CLCN6-202ENST00000346436 MIA2Q96PC5 1412 aa13.55□□□□□ -0.24
CLCN6-202ENST00000346436 MAP3K1Q13233 1512 aa13.55□□□□□ -0.24
CLCN6-202ENST00000346436 NRDCO43847 1150 aa13.55□□□□□ -0.24
CLCN6-202ENST00000346436 GOLGA6L4A6NEF3 574 aa13.55□□□□□ -0.24
CLCN6-202ENST00000346436 SYNJ2O15056 1496 aa13.55□□□□□ -0.24
CLCN6-202ENST00000346436 LRRFIP1Q32MZ4 808 aaKnown RBP13.55□□□□□ -0.24
CLCN6-202ENST00000346436 CCDC34Q96HJ3 373 aa13.55□□□□□ -0.24
CLCN6-202ENST00000346436 PMFBP1Q8TBY8 1022 aa13.54□□□□□ -0.24
CLCN6-202ENST00000346436 ANKRD30BQ9BXX2 1392 aa13.54□□□□□ -0.24
CLCN6-202ENST00000346436 NLRP2Q9NX02 1062 aa13.54□□□□□ -0.24
CLCN6-202ENST00000346436 HECW1Q76N89 1606 aa13.54□□□□□ -0.24
CLCN6-202ENST00000346436 PANK1Q8TE04 598 aa13.53□□□□□ -0.24
CLCN6-202ENST00000346436 SMG6Q86US8 1419 aaKnown RBP13.53□□□□□ -0.24
CLCN6-202ENST00000346436 MINK1Q8N4C8 1332 aaPredicted RBP13.53□□□□□ -0.24
CLCN6-202ENST00000346436 E9PSI1 815 aa13.53□□□□□ -0.24
CLCN6-202ENST00000346436 ELL2O00472 640 aaPredicted RBP13.53□□□□□ -0.24
CLCN6-202ENST00000346436 VPS37DQ86XT2 251 aa13.52□□□□□ -0.25
CLCN6-202ENST00000346436 FBXW7Q969H0 707 aa13.52□□□□□ -0.25
CLCN6-202ENST00000346436 TCEAL9Q9UHQ7 104 aa13.52□□□□□ -0.25
CLCN6-202ENST00000346436 GSE1Q14687 1217 aa13.52□□□□□ -0.25
CLCN6-202ENST00000346436 DDX58O95786 925 aaKnown RBP13.51□□□□□ -0.25
CLCN6-202ENST00000346436 C9orf84Q5VXU9 1444 aa13.51□□□□□ -0.25
CLCN6-202ENST00000346436 CGNL1Q0VF96 1302 aa13.51□□□□□ -0.25
CLCN6-202ENST00000346436 ESCO1Q5FWF5 840 aa13.51□□□□□ -0.25
CLCN6-202ENST00000346436 MARCH6O60337 910 aa13.5□□□□□ -0.25
CLCN6-202ENST00000346436 PPP2R1AP30153 589 aa13.5□□□□□ -0.25
CLCN6-202ENST00000346436 GLIPR1L2Q4G1C9 344 aa13.5□□□□□ -0.25
CLCN6-202ENST00000346436 ABCC5O15440 1437 aa13.5□□□□□ -0.25
CLCN6-202ENST00000346436 AFAP1Q8N556 730 aa13.5□□□□□ -0.25
CLCN6-202ENST00000346436 VPS53Q5VIR6 699 aa13.5□□□□□ -0.25
CLCN6-202ENST00000346436 WWC1Q8IX03 1113 aa13.5□□□□□ -0.25
CLCN6-202ENST00000346436 L1TD1Q5T7N2 865 aaKnown RBP13.49□□□□□ -0.25
CLCN6-202ENST00000346436 CHAF1AQ13111 956 aaPredicted RBP13.49□□□□□ -0.25
CLCN6-202ENST00000346436 TOMM22Q9NS69 142 aa13.49□□□□□ -0.25
CLCN6-202ENST00000346436 BCAR3O75815 825 aa13.49□□□□□ -0.25
CLCN6-202ENST00000346436 TROQ12816 1431 aaPredicted RBP13.48□□□□□ -0.25
CLCN6-202ENST00000346436 NCOA1Q15788 1441 aa13.48□□□□□ -0.25
CLCN6-202ENST00000346436 TMEM132EQ6IEE7 984 aa13.48□□□□□ -0.25
CLCN6-202ENST00000346436 CFAP70Q5T0N1 1121 aa13.48□□□□□ -0.25
CLCN6-202ENST00000346436 CCAR1Q8IX12 1150 aaKnown RBP13.48□□□□□ -0.25
CLCN6-202ENST00000346436 USP35Q9P2H5 1018 aa13.48□□□□□ -0.25
CLCN6-202ENST00000346436 PTMAP06454 111 aaKnown RBP13.48□□□□□ -0.25
CLCN6-202ENST00000346436 WDHD1O75717 1129 aaPredicted RBP13.48□□□□□ -0.25
CLCN6-202ENST00000346436 SNAPC4Q5SXM2 1469 aa13.47□□□□□ -0.25
CLCN6-202ENST00000346436 NFKBIBQ15653 356 aa13.47□□□□□ -0.25
CLCN6-202ENST00000346436 HTATSF1O43719 755 aaKnown RBP13.47□□□□□ -0.25
CLCN6-202ENST00000346436 PLCB2Q00722 1185 aa13.46□□□□□ -0.25
CLCN6-202ENST00000346436 C20orf194Q5TEA3 1177 aa13.46□□□□□ -0.25
CLCN6-202ENST00000346436 CHMP4CQ96CF2 233 aa13.46□□□□□ -0.25
CLCN6-202ENST00000346436 PLEKHH2Q8IVE3 1493 aa13.46□□□□□ -0.26
CLCN6-202ENST00000346436 BACH2Q9BYV9 841 aa13.45□□□□□ -0.26
CLCN6-202ENST00000346436 IL27Q8NEV9 243 aa13.45□□□□□ -0.26
CLCN6-202ENST00000346436 STRN4Q9NRL3 753 aa13.45□□□□□ -0.26
CLCN6-202ENST00000346436 ARHGAP5Q13017 1502 aa13.45□□□□□ -0.26
CLCN6-202ENST00000346436 URB2Q14146 1524 aaKnown RBP13.45□□□□□ -0.26
CLCN6-202ENST00000346436 SLC4A10Q6U841 1118 aa13.45□□□□□ -0.26
CLCN6-202ENST00000346436 CUL7Q14999 1698 aa13.45□□□□□ -0.26
CLCN6-202ENST00000346436 CNKSR2Q8WXI2 1034 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms