RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ARID4BQ4LE39 1312 aaPredicted RBP18.61■□□□□ 0.57
HMGB1-202ENST00000339872 ADGRF5Q8IZF2 1346 aa18.6■□□□□ 0.57
HMGB1-202ENST00000339872 ERVK-7P63135 1459 aa18.6■□□□□ 0.57
HMGB1-202ENST00000339872 NRXN1Q9ULB1 1477 aa18.6■□□□□ 0.57
HMGB1-202ENST00000339872 MYO5BQ9ULV0 1848 aa18.59■□□□□ 0.57
HMGB1-202ENST00000339872 CENPBP07199 599 aaPredicted RBP18.58■□□□□ 0.57
HMGB1-202ENST00000339872 SLC52A1Q9NWF4 448 aa18.57■□□□□ 0.56
HMGB1-202ENST00000339872 IDI1Q13907 227 aa18.57■□□□□ 0.56
HMGB1-202ENST00000339872 FBXO31Q5XUX0 539 aaPredicted RBP18.57■□□□□ 0.56
HMGB1-202ENST00000339872 RPGRIP1LQ68CZ1 1315 aa18.56■□□□□ 0.56
HMGB1-202ENST00000339872 SCAF11Q99590 1463 aaKnown RBP18.56■□□□□ 0.56
HMGB1-202ENST00000339872 NEXMIFQ5QGS0 1516 aa18.56■□□□□ 0.56
HMGB1-202ENST00000339872 TMEM131LA2VDJ0 1609 aa18.55■□□□□ 0.56
HMGB1-202ENST00000339872 CFAP70Q5T0N1 1121 aa18.55■□□□□ 0.56
HMGB1-202ENST00000339872 SPATA31D1Q6ZQQ2 1576 aa18.54■□□□□ 0.56
HMGB1-202ENST00000339872 PIK3C2GO75747 1445 aa18.54■□□□□ 0.56
HMGB1-202ENST00000339872 CCER2I3L3R5 266 aa18.54■□□□□ 0.56
HMGB1-202ENST00000339872 DNAJC5Q9H3Z4 198 aa18.54■□□□□ 0.56
HMGB1-202ENST00000339872 ESF1Q9H501 851 aaKnown RBP18.54■□□□□ 0.56
HMGB1-202ENST00000339872 TESK2Q96S53 571 aa18.53■□□□□ 0.56
HMGB1-202ENST00000339872 SETBP1Q9Y6X0 1596 aa18.51■□□□□ 0.55
HMGB1-202ENST00000339872 EIF3AQ14152 1382 aaKnown RBP18.5■□□□□ 0.55
HMGB1-202ENST00000339872 DISP3Q9P2K9 1392 aa18.5■□□□□ 0.55
HMGB1-202ENST00000339872 NUTM2DQ5VT03 806 aaPredicted RBP18.49■□□□□ 0.55
HMGB1-202ENST00000339872 TMF1P82094 1093 aa18.48■□□□□ 0.55
HMGB1-202ENST00000339872 ZMYM3Q14202 1370 aa18.48■□□□□ 0.55
HMGB1-202ENST00000339872 VGFO15240 615 aaPredicted RBP18.48■□□□□ 0.55
HMGB1-202ENST00000339872 PRKRIP1Q9H875 184 aaPredicted RBP18.46■□□□□ 0.55
HMGB1-202ENST00000339872 C14orf93Q9H972 538 aaKnown RBP18.45■□□□□ 0.54
HMGB1-202ENST00000339872 STAG3Q9UJ98 1225 aa18.45■□□□□ 0.54
HMGB1-202ENST00000339872 ADGRB1O14514 1584 aa18.45■□□□□ 0.54
HMGB1-202ENST00000339872 ZFYVE9O95405 1425 aa18.44■□□□□ 0.54
HMGB1-202ENST00000339872 MYO3AQ8NEV4 1616 aa18.44■□□□□ 0.54
HMGB1-202ENST00000339872 A2ML1A8K2U0 1454 aa18.42■□□□□ 0.54
HMGB1-202ENST00000339872 FER1L4A9Z1Z3 1794 aa18.41■□□□□ 0.54
HMGB1-202ENST00000339872 TMEM132EQ6IEE7 984 aa18.4■□□□□ 0.54
HMGB1-202ENST00000339872 CNGB1Q14028 1251 aaPredicted RBP18.39■□□□□ 0.53
HMGB1-202ENST00000339872 KDM5AP29375 1690 aaKnown RBP18.39■□□□□ 0.53
HMGB1-202ENST00000339872 QRICH2Q9H0J4 1663 aa18.39■□□□□ 0.53
HMGB1-202ENST00000339872 TNRQ92752 1358 aa18.39■□□□□ 0.53
HMGB1-202ENST00000339872 SENP3Q9H4L4 574 aaPredicted RBP18.38■□□□□ 0.53
HMGB1-202ENST00000339872 TRAK1Q9UPV9 953 aa18.38■□□□□ 0.53
HMGB1-202ENST00000339872 ARHGEF28Q8N1W1 1705 aaKnown RBP18.37■□□□□ 0.53
HMGB1-202ENST00000339872 CDCA8Q53HL2 280 aa18.37■□□□□ 0.53
HMGB1-202ENST00000339872 C3P01024 1663 aa18.37■□□□□ 0.53
HMGB1-202ENST00000339872 ASXL1Q8IXJ9 1541 aa18.36■□□□□ 0.53
HMGB1-202ENST00000339872 MYOM1P52179 1685 aa18.36■□□□□ 0.53
HMGB1-202ENST00000339872 CENPJQ9HC77 1338 aaPredicted RBP18.36■□□□□ 0.53
HMGB1-202ENST00000339872 RIMS2Q9UQ26 1411 aa18.36■□□□□ 0.53
HMGB1-202ENST00000339872 SBNO2Q9Y2G9 1366 aa18.35■□□□□ 0.53
HMGB1-202ENST00000339872 SLC24A1O60721 1099 aa18.34■□□□□ 0.53
HMGB1-202ENST00000339872 CCDC184Q52MB2 194 aa18.34■□□□□ 0.53
HMGB1-202ENST00000339872 UBR1Q8IWV7 1749 aa18.34■□□□□ 0.53
HMGB1-202ENST00000339872 ALKQ9UM73 1620 aa18.33■□□□□ 0.52
HMGB1-202ENST00000339872 PANK3Q9H999 370 aa18.32■□□□□ 0.52
HMGB1-202ENST00000339872 MRS2Q9HD23 443 aa18.32■□□□□ 0.52
HMGB1-202ENST00000339872 CEBPAP49715 358 aaPredicted RBP18.31■□□□□ 0.52
HMGB1-202ENST00000339872 PER1O15534 1290 aaPredicted RBP18.3■□□□□ 0.52
HMGB1-202ENST00000339872 SETD1AO15047 1707 aaKnown RBP18.29■□□□□ 0.52
HMGB1-202ENST00000339872 KTN1Q86UP2 1357 aaKnown RBP18.29■□□□□ 0.52
HMGB1-202ENST00000339872 NLRP1Q9C000 1473 aa18.28■□□□□ 0.52
HMGB1-202ENST00000339872 PLPPR3Q6T4P5 718 aa18.28■□□□□ 0.52
HMGB1-202ENST00000339872 STK26Q9P289 416 aa18.28■□□□□ 0.52
HMGB1-202ENST00000339872 YTHDC2Q9H6S0 1430 aaKnown RBP18.27■□□□□ 0.52
HMGB1-202ENST00000339872 NRXN3Q9Y4C0 1643 aa18.27■□□□□ 0.52
HMGB1-202ENST00000339872 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.27■□□□□ 0.51
HMGB1-202ENST00000339872 RALBP1Q15311 655 aa18.26■□□□□ 0.51
HMGB1-202ENST00000339872 PTPRMP28827 1452 aa18.25■□□□□ 0.51
HMGB1-202ENST00000339872 RIMS1Q86UR5 1692 aaKnown RBP18.25■□□□□ 0.51
HMGB1-202ENST00000339872 PARD3Q8TEW0 1356 aa18.25■□□□□ 0.51
HMGB1-202ENST00000339872 SCAF1Q9H7N4 1312 aaKnown RBP18.24■□□□□ 0.51
HMGB1-202ENST00000339872 TMEM2Q9UHN6 1383 aa18.24■□□□□ 0.51
HMGB1-202ENST00000339872 MYBBP1AQ9BQG0 1328 aaKnown RBP18.24■□□□□ 0.51
HMGB1-202ENST00000339872 TULP4Q9NRJ4 1543 aa18.23■□□□□ 0.51
HMGB1-202ENST00000339872 FAM9BQ8IZU0 186 aa18.23■□□□□ 0.51
HMGB1-202ENST00000339872 HDGFP51858 240 aaKnown RBP18.23■□□□□ 0.51
HMGB1-202ENST00000339872 CC2D1BQ5T0F9 858 aaKnown RBP18.23■□□□□ 0.51
HMGB1-202ENST00000339872 SAFB2Q14151 953 aaKnown RBP eCLIP18.22■□□□□ 0.51
HMGB1-202ENST00000339872 KNSTRNQ9Y448 316 aa18.22■□□□□ 0.51
HMGB1-202ENST00000339872 HNRNPUQ00839 825 aaKnown RBP eCLIP18.2■□□□□ 0.5
HMGB1-202ENST00000339872 EVC2Q86UK5 1308 aa18.2■□□□□ 0.5
HMGB1-202ENST00000339872 PRAM1Q96QH2 718 aa18.2■□□□□ 0.5
HMGB1-202ENST00000339872 TMC1Q8TDI8 760 aa18.19■□□□□ 0.5
HMGB1-202ENST00000339872 GTF3C3Q9Y5Q9 886 aa18.19■□□□□ 0.5
HMGB1-202ENST00000339872 POGKQ9P215 609 aa18.18■□□□□ 0.5
HMGB1-202ENST00000339872 BRD4O60885 1362 aaPredicted RBP18.18■□□□□ 0.5
HMGB1-202ENST00000339872 LRPPRCP42704 1394 aaKnown RBP18.18■□□□□ 0.5
HMGB1-202ENST00000339872 DLC1Q96QB1 1528 aa18.18■□□□□ 0.5
HMGB1-202ENST00000339872 ADAMTSL3P82987 1691 aa18.17■□□□□ 0.5
HMGB1-202ENST00000339872 BCANQ96GW7 911 aa18.17■□□□□ 0.5
HMGB1-202ENST00000339872 METP08581 1390 aa18.16■□□□□ 0.5
HMGB1-202ENST00000339872 AMER1Q5JTC6 1135 aaPredicted RBP18.16■□□□□ 0.5
HMGB1-202ENST00000339872 NLRP13Q86W25 1043 aa18.16■□□□□ 0.5
HMGB1-202ENST00000339872 MINK1Q8N4C8 1332 aaPredicted RBP18.15■□□□□ 0.5
HMGB1-202ENST00000339872 SLIT1O75093 1534 aa18.15■□□□□ 0.5
HMGB1-202ENST00000339872 KNDC1Q76NI1 1749 aa18.15■□□□□ 0.5
HMGB1-202ENST00000339872 PLEKHG1Q9ULL1 1385 aa18.14■□□□□ 0.49
HMGB1-202ENST00000339872 ARHGAP23Q9P227 1491 aa18.14■□□□□ 0.49
HMGB1-202ENST00000339872 LTKP29376 864 aa18.14■□□□□ 0.49
HMGB1-202ENST00000339872 PUS7Q96PZ0 661 aaKnown RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms