RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 ARXQ96QS3 562 aa17.74■□□□□ 0.43
SYNE3-201ENST00000334258 ADGRL2O95490 1459 aa17.74■□□□□ 0.43
SYNE3-201ENST00000334258 CHGAP10645 457 aaKnown RBP17.74■□□□□ 0.43
SYNE3-201ENST00000334258 KNSTRNQ9Y448 316 aa17.74■□□□□ 0.43
SYNE3-201ENST00000334258 PREX2Q70Z35 1606 aa17.74■□□□□ 0.43
SYNE3-201ENST00000334258 SLKQ9H2G2 1235 aaPredicted RBP17.73■□□□□ 0.43
SYNE3-201ENST00000334258 WDR7Q9Y4E6 1490 aa17.72■□□□□ 0.43
SYNE3-201ENST00000334258 GLIPR1L2Q4G1C9 344 aa17.72■□□□□ 0.43
SYNE3-201ENST00000334258 FANCAO15360 1455 aa17.71■□□□□ 0.43
SYNE3-201ENST00000334258 RSPH6AQ9H0K4 717 aa17.71■□□□□ 0.43
SYNE3-201ENST00000334258 BLMP54132 1417 aaPredicted RBP17.71■□□□□ 0.43
SYNE3-201ENST00000334258 DISP3Q9P2K9 1392 aa17.71■□□□□ 0.43
SYNE3-201ENST00000334258 FAM43AQ8N2R8 423 aa17.71■□□□□ 0.43
SYNE3-201ENST00000334258 CCDC146Q8IYE0 955 aa17.7■□□□□ 0.42
SYNE3-201ENST00000334258 CCDC144AA2RUR9 1427 aa17.7■□□□□ 0.42
SYNE3-201ENST00000334258 POGKQ9P215 609 aa17.69■□□□□ 0.42
SYNE3-201ENST00000334258 PLEKHH1Q9ULM0 1364 aa17.69■□□□□ 0.42
SYNE3-201ENST00000334258 CROCC2H7BZ55 1655 aa17.69■□□□□ 0.42
SYNE3-201ENST00000334258 ADGBQ8N7X0 1667 aa17.69■□□□□ 0.42
SYNE3-201ENST00000334258 CANXP27824 592 aaKnown RBP17.69■□□□□ 0.42
SYNE3-201ENST00000334258 BECN1Q14457 450 aa17.69■□□□□ 0.42
SYNE3-201ENST00000334258 NUTM2DQ5VT03 806 aaPredicted RBP17.69■□□□□ 0.42
SYNE3-201ENST00000334258 TESK2Q96S53 571 aa17.69■□□□□ 0.42
SYNE3-201ENST00000334258 MYO5CQ9NQX4 1742 aa17.68■□□□□ 0.42
SYNE3-201ENST00000334258 PPP2R1AP30153 589 aa17.67■□□□□ 0.42
SYNE3-201ENST00000334258 BCAR3O75815 825 aa17.67■□□□□ 0.42
SYNE3-201ENST00000334258 UHRF1BP1LA0JNW5 1464 aa17.66■□□□□ 0.42
SYNE3-201ENST00000334258 ADGRL1O94910 1474 aa17.66■□□□□ 0.42
SYNE3-201ENST00000334258 PRAG1Q86YV5 1406 aa17.65■□□□□ 0.42
SYNE3-201ENST00000334258 FAM69CQ0P6D2 419 aa17.65■□□□□ 0.42
SYNE3-201ENST00000334258 FAM135AQ9P2D6 1515 aa17.65■□□□□ 0.42
SYNE3-201ENST00000334258 ZMYM4Q5VZL5 1548 aa17.65■□□□□ 0.42
SYNE3-201ENST00000334258 SHANK2Q9UPX8 1470 aa17.65■□□□□ 0.42
SYNE3-201ENST00000334258 SLFN5Q08AF3 891 aa17.64■□□□□ 0.41
SYNE3-201ENST00000334258 CD109Q6YHK3 1445 aa17.64■□□□□ 0.41
SYNE3-201ENST00000334258 ERBINQ96RT1 1412 aa17.64■□□□□ 0.41
SYNE3-201ENST00000334258 APAF1O14727 1248 aa17.64■□□□□ 0.41
SYNE3-201ENST00000334258 INSRP06213 1382 aa17.63■□□□□ 0.41
SYNE3-201ENST00000334258 IGHDP01880 384 aa17.63■□□□□ 0.41
SYNE3-201ENST00000334258 UPF2Q9HAU5 1272 aaKnown RBP17.62■□□□□ 0.41
SYNE3-201ENST00000334258 ARHGEF5Q12774 1597 aa17.61■□□□□ 0.41
SYNE3-201ENST00000334258 SEC24BO95487 1268 aa17.61■□□□□ 0.41
SYNE3-201ENST00000334258 MLECQ14165 292 aa17.61■□□□□ 0.41
SYNE3-201ENST00000334258 COL17A1Q9UMD9 1497 aaPredicted RBP17.6■□□□□ 0.41
SYNE3-201ENST00000334258 L1TD1Q5T7N2 865 aaKnown RBP17.6■□□□□ 0.41
SYNE3-201ENST00000334258 E9PCH4 1651 aa17.6■□□□□ 0.41
SYNE3-201ENST00000334258 SPINK5Q9NQ38 1064 aaPredicted RBP17.6■□□□□ 0.41
SYNE3-201ENST00000334258 COG6Q9Y2V7 657 aa17.6■□□□□ 0.41
SYNE3-201ENST00000334258 SPRYD3Q8NCJ5 442 aa17.59■□□□□ 0.41
SYNE3-201ENST00000334258 PLPPR3Q6T4P5 718 aa17.59■□□□□ 0.41
SYNE3-201ENST00000334258 PLA2R1Q13018 1463 aa17.59■□□□□ 0.41
SYNE3-201ENST00000334258 PANK1Q8TE04 598 aa17.57■□□□□ 0.4
SYNE3-201ENST00000334258 GZF1Q9H116 711 aaPredicted RBP17.57■□□□□ 0.4
SYNE3-201ENST00000334258 ABCC1P33527 1531 aa17.57■□□□□ 0.4
SYNE3-201ENST00000334258 CFAP65Q6ZU64 1925 aaKnown RBP17.57■□□□□ 0.4
SYNE3-201ENST00000334258 ZNF521Q96K83 1311 aa17.57■□□□□ 0.4
SYNE3-201ENST00000334258 MAPK8IP3Q9UPT6 1336 aa17.57■□□□□ 0.4
SYNE3-201ENST00000334258 USP19O94966 1318 aa17.56■□□□□ 0.4
SYNE3-201ENST00000334258 RRAGDQ9NQL2 400 aaPredicted RBP17.55■□□□□ 0.4
SYNE3-201ENST00000334258 CGNL1Q0VF96 1302 aa17.55■□□□□ 0.4
SYNE3-201ENST00000334258 E9PSI1 815 aa17.55■□□□□ 0.4
SYNE3-201ENST00000334258 CLUAP1Q96AJ1 413 aa17.55■□□□□ 0.4
SYNE3-201ENST00000334258 GPRASP1Q5JY77 1395 aa17.55■□□□□ 0.4
SYNE3-201ENST00000334258 NEUROD2Q15784 382 aa17.54■□□□□ 0.4
SYNE3-201ENST00000334258 AMER1Q5JTC6 1135 aaPredicted RBP17.54■□□□□ 0.4
SYNE3-201ENST00000334258 EIF3AQ14152 1382 aaKnown RBP17.54■□□□□ 0.4
SYNE3-201ENST00000334258 KDM5DQ9BY66 1539 aa17.54■□□□□ 0.4
SYNE3-201ENST00000334258 NAP1L5Q96NT1 182 aaPredicted RBP17.53■□□□□ 0.4
SYNE3-201ENST00000334258 CDCA8Q53HL2 280 aa17.53■□□□□ 0.4
SYNE3-201ENST00000334258 CENPJQ9HC77 1338 aaPredicted RBP17.53■□□□□ 0.4
SYNE3-201ENST00000334258 A2MP01023 1474 aa17.52■□□□□ 0.39
SYNE3-201ENST00000334258 GOLGA6L3A6NEY3 463 aa17.52■□□□□ 0.39
SYNE3-201ENST00000334258 NKTRP30414 1462 aaKnown RBP17.51■□□□□ 0.39
SYNE3-201ENST00000334258 DUOX2Q9NRD8 1548 aa17.51■□□□□ 0.39
SYNE3-201ENST00000334258 PDE3AQ14432 1141 aa17.5■□□□□ 0.39
SYNE3-201ENST00000334258 DMRT2Q9Y5R5 561 aa17.5■□□□□ 0.39
SYNE3-201ENST00000334258 TRMT2AQ8IZ69 625 aaKnown RBP17.49■□□□□ 0.39
SYNE3-201ENST00000334258 PNNQ9H307 717 aaKnown RBP17.49■□□□□ 0.39
SYNE3-201ENST00000334258 TRPM1Q7Z4N2 1603 aa17.49■□□□□ 0.39
SYNE3-201ENST00000334258 MAGI2Q86UL8 1455 aa17.49■□□□□ 0.39
SYNE3-201ENST00000334258 UGGT1Q9NYU2 1555 aa17.48■□□□□ 0.39
SYNE3-201ENST00000334258 TBC1D2Q9BYX2 928 aa17.48■□□□□ 0.39
SYNE3-201ENST00000334258 CFAP70Q5T0N1 1121 aa17.48■□□□□ 0.39
SYNE3-201ENST00000334258 KANK1Q14678 1352 aa17.47■□□□□ 0.39
SYNE3-201ENST00000334258 ATP7AQ04656 1500 aa17.47■□□□□ 0.39
SYNE3-201ENST00000334258 ZFYVE16Q7Z3T8 1539 aa17.47■□□□□ 0.39
SYNE3-201ENST00000334258 RBM10P98175 930 aaKnown RBP17.47■□□□□ 0.39
SYNE3-201ENST00000334258 BCL2L13Q9BXK5 485 aa17.47■□□□□ 0.39
SYNE3-201ENST00000334258 XRCC6P12956 609 aaKnown RBP eCLIP17.46■□□□□ 0.39
SYNE3-201ENST00000334258 PMFBP1Q8TBY8 1022 aa17.46■□□□□ 0.39
SYNE3-201ENST00000334258 TMEM132EQ6IEE7 984 aa17.45■□□□□ 0.38
SYNE3-201ENST00000334258 ANTXR1Q9H6X2 564 aa17.45■□□□□ 0.38
SYNE3-201ENST00000334258 RRP7AQ9Y3A4 280 aaKnown RBP17.45■□□□□ 0.38
SYNE3-201ENST00000334258 SAFB2Q14151 953 aaKnown RBP eCLIP17.45■□□□□ 0.38
SYNE3-201ENST00000334258 PANK2Q9BZ23 570 aa17.45■□□□□ 0.38
SYNE3-201ENST00000334258 TBC1D32Q96NH3 1257 aa17.44■□□□□ 0.38
SYNE3-201ENST00000334258 PDZRN3Q9UPQ7 1066 aa17.44■□□□□ 0.38
SYNE3-201ENST00000334258 PRDM15P57071 1507 aaPredicted RBP17.44■□□□□ 0.38
SYNE3-201ENST00000334258 ADGRF5Q8IZF2 1346 aa17.43■□□□□ 0.38
SYNE3-201ENST00000334258 TNNT2P45379 298 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms