RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 RAPGEF3O95398 923 aa23.54■■□□□ 1.36
DDX28-201ENST00000332395 GGT6Q6P531 493 aa23.54■■□□□ 1.36
DDX28-201ENST00000332395 IRX6P78412 446 aaPredicted RBP23.52■■□□□ 1.36
DDX28-201ENST00000332395 EIF3AQ14152 1382 aaKnown RBP23.52■■□□□ 1.36
DDX28-201ENST00000332395 ADGRB3O60242 1522 aa23.52■■□□□ 1.36
DDX28-201ENST00000332395 ADGRF5Q8IZF2 1346 aa23.51■■□□□ 1.35
DDX28-201ENST00000332395 ABCC3O15438 1527 aa23.51■■□□□ 1.35
DDX28-201ENST00000332395 SMG6Q86US8 1419 aaKnown RBP23.51■■□□□ 1.35
DDX28-201ENST00000332395 DIP2CQ9Y2E4 1556 aa23.5■■□□□ 1.35
DDX28-201ENST00000332395 RICTORQ6R327 1708 aa23.49■■□□□ 1.35
DDX28-201ENST00000332395 NRXN1Q9ULB1 1477 aa23.49■■□□□ 1.35
DDX28-201ENST00000332395 CC2D1BQ5T0F9 858 aaKnown RBP23.49■■□□□ 1.35
DDX28-201ENST00000332395 CDCA8Q53HL2 280 aa23.48■■□□□ 1.35
DDX28-201ENST00000332395 CFAP70Q5T0N1 1121 aa23.48■■□□□ 1.35
DDX28-201ENST00000332395 ERICH6BQ5W0A0 696 aa23.47■■□□□ 1.35
DDX28-201ENST00000332395 SYNMO15061 1565 aa23.47■■□□□ 1.35
DDX28-201ENST00000332395 CFAP65Q6ZU64 1925 aaKnown RBP23.46■■□□□ 1.35
DDX28-201ENST00000332395 CAMSAP1Q5T5Y3 1602 aa23.46■■□□□ 1.35
DDX28-201ENST00000332395 CYB5RLQ6IPT4 315 aa23.46■■□□□ 1.35
DDX28-201ENST00000332395 NUDCQ9Y266 331 aa23.45■■□□□ 1.35
DDX28-201ENST00000332395 GLI2P10070 1586 aa23.45■■□□□ 1.34
DDX28-201ENST00000332395 NOS1P29475 1434 aa23.45■■□□□ 1.34
DDX28-201ENST00000332395 CHGAP10645 457 aaKnown RBP23.43■■□□□ 1.34
DDX28-201ENST00000332395 MYOM1P52179 1685 aa23.42■■□□□ 1.34
DDX28-201ENST00000332395 PPLO60437 1756 aa23.42■■□□□ 1.34
DDX28-201ENST00000332395 SENP3-EIF4A1A0A087X0R7 540 aa23.41■■□□□ 1.34
DDX28-201ENST00000332395 KDM5AP29375 1690 aaKnown RBP23.41■■□□□ 1.34
DDX28-201ENST00000332395 RIMBP3CA6NJZ7 1639 aa23.4■■□□□ 1.34
DDX28-201ENST00000332395 RIMBP3BA6NNM3 1639 aa23.4■■□□□ 1.34
DDX28-201ENST00000332395 RIMBP3Q9UFD9 1639 aa23.4■■□□□ 1.34
DDX28-201ENST00000332395 SIGLEC1Q9BZZ2 1709 aa23.4■■□□□ 1.34
DDX28-201ENST00000332395 KNSTRNQ9Y448 316 aa23.4■■□□□ 1.34
DDX28-201ENST00000332395 SETBP1Q9Y6X0 1596 aa23.39■■□□□ 1.33
DDX28-201ENST00000332395 YEATS2Q9ULM3 1422 aa23.39■■□□□ 1.33
DDX28-201ENST00000332395 SLC24A1O60721 1099 aa23.38■■□□□ 1.33
DDX28-201ENST00000332395 MYO3AQ8NEV4 1616 aa23.38■■□□□ 1.33
DDX28-201ENST00000332395 PIK3C2GO75747 1445 aa23.38■■□□□ 1.33
DDX28-201ENST00000332395 ZC3H13Q5T200 1668 aaKnown RBP23.37■■□□□ 1.33
DDX28-201ENST00000332395 ERVK-7P63135 1459 aa23.37■■□□□ 1.33
DDX28-201ENST00000332395 PIK3C2BO00750 1634 aa23.36■■□□□ 1.33
DDX28-201ENST00000332395 PPP4R2Q9NY27 417 aa23.35■■□□□ 1.33
DDX28-201ENST00000332395 AMER1Q5JTC6 1135 aaPredicted RBP23.35■■□□□ 1.33
DDX28-201ENST00000332395 RPGRIP1LQ68CZ1 1315 aa23.35■■□□□ 1.33
DDX28-201ENST00000332395 ARHGAP31Q2M1Z3 1444 aa23.35■■□□□ 1.33
DDX28-201ENST00000332395 ZMYM4Q5VZL5 1548 aa23.34■■□□□ 1.33
DDX28-201ENST00000332395 ASXL1Q8IXJ9 1541 aa23.34■■□□□ 1.33
DDX28-201ENST00000332395 INSRP06213 1382 aa23.34■■□□□ 1.33
DDX28-201ENST00000332395 SBNO2Q9Y2G9 1366 aa23.33■■□□□ 1.33
DDX28-201ENST00000332395 C14orf93Q9H972 538 aaKnown RBP23.33■■□□□ 1.32
DDX28-201ENST00000332395 DIP2BQ9P265 1576 aa23.32■■□□□ 1.32
DDX28-201ENST00000332395 RNF123Q5XPI4 1314 aa23.31■■□□□ 1.32
DDX28-201ENST00000332395 BLMP54132 1417 aaPredicted RBP23.31■■□□□ 1.32
DDX28-201ENST00000332395 ADGRB1O14514 1584 aa23.31■■□□□ 1.32
DDX28-201ENST00000332395 FAM69CQ0P6D2 419 aa23.3■■□□□ 1.32
DDX28-201ENST00000332395 NPC1L1Q9UHC9 1359 aa23.3■■□□□ 1.32
DDX28-201ENST00000332395 CENPJQ9HC77 1338 aaPredicted RBP23.29■■□□□ 1.32
DDX28-201ENST00000332395 PPP2R1AP30153 589 aa23.28■■□□□ 1.32
DDX28-201ENST00000332395 NEXMIFQ5QGS0 1516 aa23.27■■□□□ 1.32
DDX28-201ENST00000332395 TRAK1Q9UPV9 953 aa23.25■■□□□ 1.31
DDX28-201ENST00000332395 PDE3BQ13370 1112 aa23.25■■□□□ 1.31
DDX28-201ENST00000332395 SALL2Q9Y467 1007 aaPredicted RBP23.25■■□□□ 1.31
DDX28-201ENST00000332395 QRICH2Q9H0J4 1663 aa23.24■■□□□ 1.31
DDX28-201ENST00000332395 TMEM132EQ6IEE7 984 aa23.23■■□□□ 1.31
DDX28-201ENST00000332395 TSPOAP1O95153 1857 aa23.23■■□□□ 1.31
DDX28-201ENST00000332395 PREX1Q8TCU6 1659 aa23.23■■□□□ 1.31
DDX28-201ENST00000332395 VGFO15240 615 aaPredicted RBP23.23■■□□□ 1.31
DDX28-201ENST00000332395 IDI1Q13907 227 aa23.23■■□□□ 1.31
DDX28-201ENST00000332395 SLC52A1Q9NWF4 448 aa23.22■■□□□ 1.31
DDX28-201ENST00000332395 NUTM2DQ5VT03 806 aaPredicted RBP23.2■■□□□ 1.3
DDX28-201ENST00000332395 B4GALNT3Q6L9W6 998 aa23.2■■□□□ 1.3
DDX28-201ENST00000332395 ADAMTS8Q9UP79 889 aa23.2■■□□□ 1.3
DDX28-201ENST00000332395 CARD14Q9BXL6 1004 aa23.18■■□□□ 1.3
DDX28-201ENST00000332395 ZFYVE9O95405 1425 aa23.17■■□□□ 1.3
DDX28-201ENST00000332395 WDR43Q15061 677 aaKnown RBP eCLIP23.17■■□□□ 1.3
DDX28-201ENST00000332395 MYO5BQ9ULV0 1848 aa23.16■■□□□ 1.3
DDX28-201ENST00000332395 REREQ9P2R6 1566 aa23.16■■□□□ 1.3
DDX28-201ENST00000332395 TMEM131LA2VDJ0 1609 aa23.16■■□□□ 1.3
DDX28-201ENST00000332395 ARHGEF28Q8N1W1 1705 aaKnown RBP23.15■■□□□ 1.3
DDX28-201ENST00000332395 RBM19Q9Y4C8 960 aaKnown RBP23.15■■□□□ 1.3
DDX28-201ENST00000332395 CDCA7LQ96GN5 454 aa23.14■■□□□ 1.3
DDX28-201ENST00000332395 RCAN3Q9UKA8 241 aa23.14■■□□□ 1.29
DDX28-201ENST00000332395 BCL11AQ9H165 835 aa23.13■■□□□ 1.29
DDX28-201ENST00000332395 AGLP35573 1532 aa23.12■■□□□ 1.29
DDX28-201ENST00000332395 RRP1P56182 461 aaKnown RBP23.11■■□□□ 1.29
DDX28-201ENST00000332395 FBXO31Q5XUX0 539 aaPredicted RBP23.1■■□□□ 1.29
DDX28-201ENST00000332395 NSD3Q9BZ95 1437 aa23.09■■□□□ 1.29
DDX28-201ENST00000332395 SLC12A5Q9H2X9 1139 aa23.08■■□□□ 1.29
DDX28-201ENST00000332395 TULP4Q9NRJ4 1543 aa23.08■■□□□ 1.29
DDX28-201ENST00000332395 PPP6R1Q9UPN7 881 aa23.07■■□□□ 1.28
DDX28-201ENST00000332395 EVC2Q86UK5 1308 aa23.07■■□□□ 1.28
DDX28-201ENST00000332395 PUS7Q96PZ0 661 aaKnown RBP23.06■■□□□ 1.28
DDX28-201ENST00000332395 CLTCQ00610 1675 aaKnown RBP23.05■■□□□ 1.28
DDX28-201ENST00000332395 PLEKHH1Q9ULM0 1364 aa23.05■■□□□ 1.28
DDX28-201ENST00000332395 CCDC136Q96JN2 1154 aa23.04■■□□□ 1.28
DDX28-201ENST00000332395 USP32Q8NFA0 1604 aa23.04■■□□□ 1.28
DDX28-201ENST00000332395 KIF13AQ9H1H9 1805 aa23.02■■□□□ 1.28
DDX28-201ENST00000332395 ZNF521Q96K83 1311 aa23.01■■□□□ 1.27
DDX28-201ENST00000332395 SENP3Q9H4L4 574 aaPredicted RBP23.01■■□□□ 1.27
DDX28-201ENST00000332395 STK26Q9P289 416 aa23■■□□□ 1.27
DDX28-201ENST00000332395 ARHGEF40Q8TER5 1519 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms