RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 KIAA1210Q9ULL0 1709 aa18.06■□□□□ 0.48
DDX39A-202ENST00000324340 LAMC1P11047 1609 aa18.06■□□□□ 0.48
DDX39A-202ENST00000324340 ZNF326Q5BKZ1 582 aaKnown RBP18.04■□□□□ 0.48
DDX39A-202ENST00000324340 GTF3C3Q9Y5Q9 886 aa18.04■□□□□ 0.48
DDX39A-202ENST00000324340 GPRASP1Q5JY77 1395 aa18.04■□□□□ 0.48
DDX39A-202ENST00000324340 ZFYVE9O95405 1425 aa18.04■□□□□ 0.48
DDX39A-202ENST00000324340 CHGAP10645 457 aaKnown RBP18.04■□□□□ 0.48
DDX39A-202ENST00000324340 A2ML1A8K2U0 1454 aa18.03■□□□□ 0.48
DDX39A-202ENST00000324340 NLRP1Q9C000 1473 aa18.03■□□□□ 0.48
DDX39A-202ENST00000324340 KDM4FA0A1W2PPD8 638 aa18.03■□□□□ 0.48
DDX39A-202ENST00000324340 UBR1Q8IWV7 1749 aa18■□□□□ 0.47
DDX39A-202ENST00000324340 PIK3C2GO75747 1445 aa18■□□□□ 0.47
DDX39A-202ENST00000324340 CEBPAP49715 358 aaPredicted RBP18■□□□□ 0.47
DDX39A-202ENST00000324340 EIF4G2P78344 907 aaKnown RBP eCLIP18■□□□□ 0.47
DDX39A-202ENST00000324340 ADGRF5Q8IZF2 1346 aa17.99■□□□□ 0.47
DDX39A-202ENST00000324340 ROCK2O75116 1388 aaKnown RBP17.99■□□□□ 0.47
DDX39A-202ENST00000324340 VGFO15240 615 aaPredicted RBP17.98■□□□□ 0.47
DDX39A-202ENST00000324340 MYO3AQ8NEV4 1616 aa17.98■□□□□ 0.47
DDX39A-202ENST00000324340 HSPA5P11021 654 aaKnown RBP17.96■□□□□ 0.47
DDX39A-202ENST00000324340 SETBP1Q9Y6X0 1596 aa17.96■□□□□ 0.46
DDX39A-202ENST00000324340 USP47Q96K76 1375 aa17.95■□□□□ 0.46
DDX39A-202ENST00000324340 NBPF1Q3BBV0 1214 aa17.95■□□□□ 0.46
DDX39A-202ENST00000324340 CARD11Q9BXL7 1154 aa17.95■□□□□ 0.46
DDX39A-202ENST00000324340 STAG3Q9UJ98 1225 aa17.95■□□□□ 0.46
DDX39A-202ENST00000324340 IQGAP1P46940 1657 aa17.94■□□□□ 0.46
DDX39A-202ENST00000324340 DIEXFQ68CQ4 756 aaKnown RBP17.93■□□□□ 0.46
DDX39A-202ENST00000324340 RIMS2Q9UQ26 1411 aa17.93■□□□□ 0.46
DDX39A-202ENST00000324340 PTPRMP28827 1452 aa17.92■□□□□ 0.46
DDX39A-202ENST00000324340 ZNF142P52746 1687 aaPredicted RBP17.92■□□□□ 0.46
DDX39A-202ENST00000324340 C14orf93Q9H972 538 aaKnown RBP17.91■□□□□ 0.46
DDX39A-202ENST00000324340 TMEM2Q9UHN6 1383 aa17.91■□□□□ 0.46
DDX39A-202ENST00000324340 HIRIP3Q9BW71 556 aaPredicted RBP17.91■□□□□ 0.46
DDX39A-202ENST00000324340 ADGRB1O14514 1584 aa17.9■□□□□ 0.46
DDX39A-202ENST00000324340 CEP170BQ9Y4F5 1589 aaPredicted RBP17.9■□□□□ 0.46
DDX39A-202ENST00000324340 POLR1AO95602 1720 aaPredicted RBP17.9■□□□□ 0.46
DDX39A-202ENST00000324340 SLIT1O75093 1534 aa17.9■□□□□ 0.46
DDX39A-202ENST00000324340 ARHGAP23Q9P227 1491 aa17.9■□□□□ 0.46
DDX39A-202ENST00000324340 CFAP70Q5T0N1 1121 aa17.9■□□□□ 0.46
DDX39A-202ENST00000324340 SCAF11Q99590 1463 aaKnown RBP17.89■□□□□ 0.45
DDX39A-202ENST00000324340 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.89■□□□□ 0.45
DDX39A-202ENST00000324340 SETD1BQ9UPS6 1966 aaKnown RBP17.88■□□□□ 0.45
DDX39A-202ENST00000324340 HDGFP51858 240 aaKnown RBP17.87■□□□□ 0.45
DDX39A-202ENST00000324340 NUTM2DQ5VT03 806 aaPredicted RBP17.86■□□□□ 0.45
DDX39A-202ENST00000324340 ALKQ9UM73 1620 aa17.85■□□□□ 0.45
DDX39A-202ENST00000324340 NRXN3Q9Y4C0 1643 aa17.85■□□□□ 0.45
DDX39A-202ENST00000324340 SETD1AO15047 1707 aaKnown RBP17.85■□□□□ 0.45
DDX39A-202ENST00000324340 PLPPR3Q6T4P5 718 aa17.84■□□□□ 0.45
DDX39A-202ENST00000324340 ASXL1Q8IXJ9 1541 aa17.84■□□□□ 0.45
DDX39A-202ENST00000324340 ST20-MTHFSA0A0A6YYL1 179 aa17.83■□□□□ 0.45
DDX39A-202ENST00000324340 THEMISQ8N1K5 641 aaPredicted RBP17.83■□□□□ 0.45
DDX39A-202ENST00000324340 EIF3AQ14152 1382 aaKnown RBP17.82■□□□□ 0.44
DDX39A-202ENST00000324340 PLEKHG1Q9ULL1 1385 aa17.81■□□□□ 0.44
DDX39A-202ENST00000324340 WASHC2AQ641Q2 1341 aa17.8■□□□□ 0.44
DDX39A-202ENST00000324340 CCDC7Q96M83 1385 aa17.8■□□□□ 0.44
DDX39A-202ENST00000324340 C11orf95C9JLR9 678 aaPredicted RBP17.79■□□□□ 0.44
DDX39A-202ENST00000324340 TESK2Q96S53 571 aa17.79■□□□□ 0.44
DDX39A-202ENST00000324340 LTKP29376 864 aa17.79■□□□□ 0.44
DDX39A-202ENST00000324340 ARHGEF28Q8N1W1 1705 aaKnown RBP17.78■□□□□ 0.44
DDX39A-202ENST00000324340 KIF7Q2M1P5 1343 aa17.77■□□□□ 0.44
DDX39A-202ENST00000324340 MED14O60244 1454 aa17.77■□□□□ 0.44
DDX39A-202ENST00000324340 TMEM132EQ6IEE7 984 aa17.77■□□□□ 0.43
DDX39A-202ENST00000324340 TXNDC2Q86VQ3 553 aa17.77■□□□□ 0.43
DDX39A-202ENST00000324340 EID1Q9Y6B2 187 aa17.77■□□□□ 0.43
DDX39A-202ENST00000324340 SBNO2Q9Y2G9 1366 aa17.76■□□□□ 0.43
DDX39A-202ENST00000324340 ADAMTS13Q76LX8 1427 aa17.76■□□□□ 0.43
DDX39A-202ENST00000324340 YTHDC2Q9H6S0 1430 aaKnown RBP17.75■□□□□ 0.43
DDX39A-202ENST00000324340 DIP2AQ14689 1571 aa17.75■□□□□ 0.43
DDX39A-202ENST00000324340 DLC1Q96QB1 1528 aa17.74■□□□□ 0.43
DDX39A-202ENST00000324340 SLC24A1O60721 1099 aa17.73■□□□□ 0.43
DDX39A-202ENST00000324340 KNDC1Q76NI1 1749 aa17.72■□□□□ 0.43
DDX39A-202ENST00000324340 QRICH2Q9H0J4 1663 aa17.72■□□□□ 0.43
DDX39A-202ENST00000324340 LRPPRCP42704 1394 aaKnown RBP17.72■□□□□ 0.43
DDX39A-202ENST00000324340 DDX10Q13206 875 aaKnown RBP17.72■□□□□ 0.43
DDX39A-202ENST00000324340 METP08581 1390 aa17.71■□□□□ 0.43
DDX39A-202ENST00000324340 TRAK1Q9UPV9 953 aa17.71■□□□□ 0.43
DDX39A-202ENST00000324340 ABCC11Q96J66 1382 aa17.7■□□□□ 0.42
DDX39A-202ENST00000324340 DISP3Q9P2K9 1392 aa17.7■□□□□ 0.42
DDX39A-202ENST00000324340 CENPJQ9HC77 1338 aaPredicted RBP17.7■□□□□ 0.42
DDX39A-202ENST00000324340 TMF1P82094 1093 aa17.7■□□□□ 0.42
DDX39A-202ENST00000324340 TECPR2O15040 1411 aa17.7■□□□□ 0.42
DDX39A-202ENST00000324340 ANKLE2Q86XL3 938 aa17.68■□□□□ 0.42
DDX39A-202ENST00000324340 TBX22Q9Y458 520 aa17.68■□□□□ 0.42
DDX39A-202ENST00000324340 CPS1P31327 1500 aa17.68■□□□□ 0.42
DDX39A-202ENST00000324340 SENP3Q9H4L4 574 aaPredicted RBP17.67■□□□□ 0.42
DDX39A-202ENST00000324340 SIRT1Q96EB6 747 aa17.66■□□□□ 0.42
DDX39A-202ENST00000324340 FAM135BQ49AJ0 1406 aa17.65■□□□□ 0.42
DDX39A-202ENST00000324340 CDCA8Q53HL2 280 aa17.65■□□□□ 0.42
DDX39A-202ENST00000324340 BCANQ96GW7 911 aa17.65■□□□□ 0.42
DDX39A-202ENST00000324340 STK26Q9P289 416 aa17.64■□□□□ 0.41
DDX39A-202ENST00000324340 PIK3R4Q99570 1358 aa17.64■□□□□ 0.41
DDX39A-202ENST00000324340 XRN1Q8IZH2 1706 aaKnown RBP17.62■□□□□ 0.41
DDX39A-202ENST00000324340 SLC26A8Q96RN1 970 aa17.62■□□□□ 0.41
DDX39A-202ENST00000324340 TULP4Q9NRJ4 1543 aa17.61■□□□□ 0.41
DDX39A-202ENST00000324340 NPHP4O75161 1426 aaPredicted RBP17.61■□□□□ 0.41
DDX39A-202ENST00000324340 PTPRUQ92729 1446 aa17.61■□□□□ 0.41
DDX39A-202ENST00000324340 LMTK3Q96Q04 1460 aa17.61■□□□□ 0.41
DDX39A-202ENST00000324340 PUS7Q96PZ0 661 aaKnown RBP17.61■□□□□ 0.41
DDX39A-202ENST00000324340 PRAM1Q96QH2 718 aa17.61■□□□□ 0.41
DDX39A-202ENST00000324340 MYOM1P52179 1685 aa17.6■□□□□ 0.41
DDX39A-202ENST00000324340 PTCH1Q13635 1447 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms