RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 RIMS2Q9UQ26 1411 aa22■■□□□ 1.11
PDLIM5-202ENST00000318007 IFT172Q9UG01 1749 aa21.99■■□□□ 1.11
PDLIM5-202ENST00000318007 BCANQ96GW7 911 aa21.99■■□□□ 1.11
PDLIM5-202ENST00000318007 SETD1BQ9UPS6 1966 aaKnown RBP21.98■■□□□ 1.11
PDLIM5-202ENST00000318007 HSPA2P54652 639 aa21.98■■□□□ 1.11
PDLIM5-202ENST00000318007 NEURL4Q96JN8 1562 aa21.97■■□□□ 1.11
PDLIM5-202ENST00000318007 TMEM2Q9UHN6 1383 aa21.97■■□□□ 1.11
PDLIM5-202ENST00000318007 THEMISQ8N1K5 641 aaPredicted RBP21.97■■□□□ 1.11
PDLIM5-202ENST00000318007 PRAG1Q86YV5 1406 aa21.97■■□□□ 1.11
PDLIM5-202ENST00000318007 LTKP29376 864 aa21.96■■□□□ 1.11
PDLIM5-202ENST00000318007 ZNF142P52746 1687 aaPredicted RBP21.95■■□□□ 1.1
PDLIM5-202ENST00000318007 TXNDC2Q86VQ3 553 aa21.95■■□□□ 1.1
PDLIM5-202ENST00000318007 RPGRIP1LQ68CZ1 1315 aa21.95■■□□□ 1.1
PDLIM5-202ENST00000318007 VGFO15240 615 aaPredicted RBP21.94■■□□□ 1.1
PDLIM5-202ENST00000318007 NBPF1Q3BBV0 1214 aa21.94■■□□□ 1.1
PDLIM5-202ENST00000318007 CFAP70Q5T0N1 1121 aa21.94■■□□□ 1.1
PDLIM5-202ENST00000318007 ZFYVE9O95405 1425 aa21.93■■□□□ 1.1
PDLIM5-202ENST00000318007 HIRIP3Q9BW71 556 aaPredicted RBP21.92■■□□□ 1.1
PDLIM5-202ENST00000318007 MYOM2P54296 1465 aa21.92■■□□□ 1.1
PDLIM5-202ENST00000318007 KDM5AP29375 1690 aaKnown RBP21.92■■□□□ 1.1
PDLIM5-202ENST00000318007 EID1Q9Y6B2 187 aa21.91■■□□□ 1.1
PDLIM5-202ENST00000318007 ROCK2O75116 1388 aaKnown RBP21.9■■□□□ 1.1
PDLIM5-202ENST00000318007 PIK3C2GO75747 1445 aa21.89■■□□□ 1.1
PDLIM5-202ENST00000318007 TMEM132EQ6IEE7 984 aa21.88■■□□□ 1.09
PDLIM5-202ENST00000318007 TRPM1Q7Z4N2 1603 aa21.88■■□□□ 1.09
PDLIM5-202ENST00000318007 LMTK3Q96Q04 1460 aa21.88■■□□□ 1.09
PDLIM5-202ENST00000318007 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.87■■□□□ 1.09
PDLIM5-202ENST00000318007 NCKAP5LQ9HCH0 1330 aa21.87■■□□□ 1.09
PDLIM5-202ENST00000318007 SLC26A8Q96RN1 970 aa21.87■■□□□ 1.09
PDLIM5-202ENST00000318007 CARD11Q9BXL7 1154 aa21.87■■□□□ 1.09
PDLIM5-202ENST00000318007 SLIT1O75093 1534 aa21.86■■□□□ 1.09
PDLIM5-202ENST00000318007 HDGFP51858 240 aaKnown RBP21.86■■□□□ 1.09
PDLIM5-202ENST00000318007 ARHGAP23Q9P227 1491 aa21.85■■□□□ 1.09
PDLIM5-202ENST00000318007 NRXN1Q9ULB1 1477 aa21.85■■□□□ 1.09
PDLIM5-202ENST00000318007 SCAF11Q99590 1463 aaKnown RBP21.85■■□□□ 1.09
PDLIM5-202ENST00000318007 ANKLE2Q86XL3 938 aa21.85■■□□□ 1.09
PDLIM5-202ENST00000318007 RALGAPBQ86X10 1494 aa21.84■■□□□ 1.09
PDLIM5-202ENST00000318007 IQGAP1P46940 1657 aa21.84■■□□□ 1.09
PDLIM5-202ENST00000318007 STAC3Q96MF2 364 aa21.82■■□□□ 1.08
PDLIM5-202ENST00000318007 STK26Q9P289 416 aa21.81■■□□□ 1.08
PDLIM5-202ENST00000318007 C14orf93Q9H972 538 aaKnown RBP21.8■■□□□ 1.08
PDLIM5-202ENST00000318007 NRXN3Q9Y4C0 1643 aa21.8■■□□□ 1.08
PDLIM5-202ENST00000318007 ALKQ9UM73 1620 aa21.79■■□□□ 1.08
PDLIM5-202ENST00000318007 PLEKHG1Q9ULL1 1385 aa21.78■■□□□ 1.08
PDLIM5-202ENST00000318007 TRAK1Q9UPV9 953 aa21.78■■□□□ 1.08
PDLIM5-202ENST00000318007 POLR1AO95602 1720 aaPredicted RBP21.76■■□□□ 1.07
PDLIM5-202ENST00000318007 METP08581 1390 aa21.76■■□□□ 1.07
PDLIM5-202ENST00000318007 USP47Q96K76 1375 aa21.76■■□□□ 1.07
PDLIM5-202ENST00000318007 HSPA5P11021 654 aaKnown RBP21.76■■□□□ 1.07
PDLIM5-202ENST00000318007 ASXL1Q8IXJ9 1541 aa21.75■■□□□ 1.07
PDLIM5-202ENST00000318007 ADAMTS13Q76LX8 1427 aa21.75■■□□□ 1.07
PDLIM5-202ENST00000318007 SETBP1Q9Y6X0 1596 aa21.75■■□□□ 1.07
PDLIM5-202ENST00000318007 EIF4G2P78344 907 aaKnown RBP eCLIP21.74■■□□□ 1.07
PDLIM5-202ENST00000318007 ADGRB1O14514 1584 aa21.73■■□□□ 1.07
PDLIM5-202ENST00000318007 SAFB2Q14151 953 aaKnown RBP eCLIP21.73■■□□□ 1.07
PDLIM5-202ENST00000318007 KIAA1210Q9ULL0 1709 aa21.73■■□□□ 1.07
PDLIM5-202ENST00000318007 LAMC1P11047 1609 aa21.72■■□□□ 1.07
PDLIM5-202ENST00000318007 NPHP4O75161 1426 aaPredicted RBP21.72■■□□□ 1.07
PDLIM5-202ENST00000318007 SETD1AO15047 1707 aaKnown RBP21.72■■□□□ 1.07
PDLIM5-202ENST00000318007 ST20-MTHFSA0A0A6YYL1 179 aa21.71■■□□□ 1.07
PDLIM5-202ENST00000318007 GPRASP1Q5JY77 1395 aa21.71■■□□□ 1.07
PDLIM5-202ENST00000318007 YTHDC2Q9H6S0 1430 aaKnown RBP21.68■■□□□ 1.06
PDLIM5-202ENST00000318007 STRCQ7RTU9 1775 aa21.67■■□□□ 1.06
PDLIM5-202ENST00000318007 RBM33Q96EV2 1170 aaKnown RBP21.65■■□□□ 1.06
PDLIM5-202ENST00000318007 POLR3GLQ9BT43 218 aa21.65■■□□□ 1.06
PDLIM5-202ENST00000318007 PTPRUQ92729 1446 aa21.64■■□□□ 1.06
PDLIM5-202ENST00000318007 MED14O60244 1454 aa21.64■■□□□ 1.05
PDLIM5-202ENST00000318007 WAPLQ7Z5K2 1190 aa21.64■■□□□ 1.05
PDLIM5-202ENST00000318007 TBX22Q9Y458 520 aa21.64■■□□□ 1.05
PDLIM5-202ENST00000318007 PRAM1Q96QH2 718 aa21.63■■□□□ 1.05
PDLIM5-202ENST00000318007 AMOTL2Q9Y2J4 779 aa21.63■■□□□ 1.05
PDLIM5-202ENST00000318007 ZNF316A6NFI3 1004 aaPredicted RBP21.62■■□□□ 1.05
PDLIM5-202ENST00000318007 POGKQ9P215 609 aa21.61■■□□□ 1.05
PDLIM5-202ENST00000318007 ARHGEF28Q8N1W1 1705 aaKnown RBP21.61■■□□□ 1.05
PDLIM5-202ENST00000318007 EIF3AQ14152 1382 aaKnown RBP21.6■■□□□ 1.05
PDLIM5-202ENST00000318007 PLEKHH1Q9ULM0 1364 aa21.6■■□□□ 1.05
PDLIM5-202ENST00000318007 KCNA6P17658 529 aa21.6■■□□□ 1.05
PDLIM5-202ENST00000318007 DIP2AQ14689 1571 aa21.6■■□□□ 1.05
PDLIM5-202ENST00000318007 LRPPRCP42704 1394 aaKnown RBP21.59■■□□□ 1.05
PDLIM5-202ENST00000318007 CENPJQ9HC77 1338 aaPredicted RBP21.59■■□□□ 1.05
PDLIM5-202ENST00000318007 C11orf95C9JLR9 678 aaPredicted RBP21.58■■□□□ 1.05
PDLIM5-202ENST00000318007 ROBO2Q9HCK4 1378 aa21.58■■□□□ 1.05
PDLIM5-202ENST00000318007 MINK1Q8N4C8 1332 aaPredicted RBP21.57■■□□□ 1.04
PDLIM5-202ENST00000318007 QRICH2Q9H0J4 1663 aa21.55■■□□□ 1.04
PDLIM5-202ENST00000318007 TESK2Q96S53 571 aa21.55■■□□□ 1.04
PDLIM5-202ENST00000318007 ABCC11Q96J66 1382 aa21.54■■□□□ 1.04
PDLIM5-202ENST00000318007 DISP3Q9P2K9 1392 aa21.53■■□□□ 1.04
PDLIM5-202ENST00000318007 ZNF335Q9H4Z2 1342 aaPredicted RBP21.53■■□□□ 1.04
PDLIM5-202ENST00000318007 CHD2O14647 1828 aaKnown RBP21.52■■□□□ 1.04
PDLIM5-202ENST00000318007 XRN1Q8IZH2 1706 aaKnown RBP21.51■■□□□ 1.03
PDLIM5-202ENST00000318007 CPS1P31327 1500 aa21.5■■□□□ 1.03
PDLIM5-202ENST00000318007 KNDC1Q76NI1 1749 aa21.5■■□□□ 1.03
PDLIM5-202ENST00000318007 WASHC2AQ641Q2 1341 aa21.49■■□□□ 1.03
PDLIM5-202ENST00000318007 PIK3R4Q99570 1358 aa21.49■■□□□ 1.03
PDLIM5-202ENST00000318007 TECPR2O15040 1411 aa21.49■■□□□ 1.03
PDLIM5-202ENST00000318007 NUTM2FA1L443 756 aa21.48■■□□□ 1.03
PDLIM5-202ENST00000318007 C14orf37Q86TY3 774 aa21.48■■□□□ 1.03
PDLIM5-202ENST00000318007 STRCP1A6NGW2 1772 aa21.48■■□□□ 1.03
PDLIM5-202ENST00000318007 KIF7Q2M1P5 1343 aa21.48■■□□□ 1.03
PDLIM5-202ENST00000318007 TMF1P82094 1093 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms