RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TPM2P07951 284 aa21.2■□□□□ 0.98
SYNPO-201ENST00000307662 CCDC39Q9UFE4 941 aa21.2■□□□□ 0.98
SYNPO-201ENST00000307662 ZNF330Q9Y3S2 320 aaPredicted RBP21.19■□□□□ 0.98
SYNPO-201ENST00000307662 CCDC70Q6NSX1 233 aa21.19■□□□□ 0.98
SYNPO-201ENST00000307662 AAMPQ13685 434 aa21.19■□□□□ 0.98
SYNPO-201ENST00000307662 KIF21BO75037 1637 aa21.19■□□□□ 0.98
SYNPO-201ENST00000307662 PTPRGP23470 1445 aa21.19■□□□□ 0.98
SYNPO-201ENST00000307662 UACAQ9BZF9 1416 aa21.19■□□□□ 0.98
SYNPO-201ENST00000307662 DIAPH3Q9NSV4 1193 aa21.18■□□□□ 0.98
SYNPO-201ENST00000307662 FGD6Q6ZV73 1430 aa21.18■□□□□ 0.98
SYNPO-201ENST00000307662 TRAK1Q9UPV9 953 aa21.18■□□□□ 0.98
SYNPO-201ENST00000307662 PES1O00541 588 aaKnown RBP21.17■□□□□ 0.98
SYNPO-201ENST00000307662 GAPVD1Q14C86 1478 aa21.17■□□□□ 0.98
SYNPO-201ENST00000307662 MYOM3Q5VTT5 1437 aa21.17■□□□□ 0.98
SYNPO-201ENST00000307662 RUFY2Q8WXA3 655 aa21.17■□□□□ 0.98
SYNPO-201ENST00000307662 IL27Q8NEV9 243 aa21.17■□□□□ 0.98
SYNPO-201ENST00000307662 ANO8Q9HCE9 1232 aaPredicted RBP21.17■□□□□ 0.98
SYNPO-201ENST00000307662 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.16■□□□□ 0.98
SYNPO-201ENST00000307662 TRHP20396 242 aaPredicted RBP21.16■□□□□ 0.98
SYNPO-201ENST00000307662 HOMER1Q86YM7 354 aa21.16■□□□□ 0.98
SYNPO-201ENST00000307662 TRAK2O60296 914 aa21.16■□□□□ 0.98
SYNPO-201ENST00000307662 INTS3Q68E01 1043 aaKnown RBP21.15■□□□□ 0.98
SYNPO-201ENST00000307662 ZKSCAN1P17029 563 aaPredicted RBP21.15■□□□□ 0.98
SYNPO-201ENST00000307662 NUTM2DQ5VT03 806 aaPredicted RBP21.15■□□□□ 0.98
SYNPO-201ENST00000307662 KIF7Q2M1P5 1343 aa21.15■□□□□ 0.98
SYNPO-201ENST00000307662 TOMM22Q9NS69 142 aa21.14■□□□□ 0.98
SYNPO-201ENST00000307662 CSB-PGBD3P0DP91 1061 aa21.14■□□□□ 0.97
SYNPO-201ENST00000307662 BICD2Q8TD16 824 aa21.14■□□□□ 0.97
SYNPO-201ENST00000307662 IFT57Q9NWB7 429 aa21.13■□□□□ 0.97
SYNPO-201ENST00000307662 API5Q9BZZ5 524 aaKnown RBP21.13■□□□□ 0.97
SYNPO-201ENST00000307662 ARGLU1Q9NWB6 273 aaPredicted RBP21.13■□□□□ 0.97
SYNPO-201ENST00000307662 CUX1P39880 1505 aa21.12■□□□□ 0.97
SYNPO-201ENST00000307662 FRAT2O75474 233 aaPredicted RBP21.12■□□□□ 0.97
SYNPO-201ENST00000307662 ANO2Q9NQ90 1003 aa21.12■□□□□ 0.97
SYNPO-201ENST00000307662 AMPHP49418 695 aa21.12■□□□□ 0.97
SYNPO-201ENST00000307662 CEP89Q96ST8 783 aa21.11■□□□□ 0.97
SYNPO-201ENST00000307662 SASS6Q6UVJ0 657 aa21.11■□□□□ 0.97
SYNPO-201ENST00000307662 LRRC9Q6ZRR7 1453 aa21.11■□□□□ 0.97
SYNPO-201ENST00000307662 PKNOX2Q96KN3 472 aa21.11■□□□□ 0.97
SYNPO-201ENST00000307662 ROCK1Q13464 1354 aa21.1■□□□□ 0.97
SYNPO-201ENST00000307662 RAD54L2Q9Y4B4 1467 aa21.1■□□□□ 0.97
SYNPO-201ENST00000307662 PDE4CQ08493 712 aa21.1■□□□□ 0.97
SYNPO-201ENST00000307662 SMC3Q9UQE7 1217 aa21.1■□□□□ 0.97
SYNPO-201ENST00000307662 LNPKQ9C0E8 428 aa21.09■□□□□ 0.97
SYNPO-201ENST00000307662 RUNDC1Q96C34 613 aa21.09■□□□□ 0.97
SYNPO-201ENST00000307662 NCBP3Q53F19 620 aaKnown RBP21.08■□□□□ 0.97
SYNPO-201ENST00000307662 VGFO15240 615 aaPredicted RBP21.08■□□□□ 0.97
SYNPO-201ENST00000307662 NCAPD3P42695 1498 aa21.08■□□□□ 0.96
SYNPO-201ENST00000307662 VPS37CA5D8V6 355 aaPredicted RBP21.08■□□□□ 0.96
SYNPO-201ENST00000307662 EID1Q9Y6B2 187 aa21.08■□□□□ 0.96
SYNPO-201ENST00000307662 BRD4O60885 1362 aaPredicted RBP21.07■□□□□ 0.96
SYNPO-201ENST00000307662 MNS1Q8NEH6 495 aa21.07■□□□□ 0.96
SYNPO-201ENST00000307662 CCDC173Q0VFZ6 552 aa21.07■□□□□ 0.96
SYNPO-201ENST00000307662 NOM1Q5C9Z4 860 aaKnown RBP21.07■□□□□ 0.96
SYNPO-201ENST00000307662 PANK1Q8TE04 598 aa21.06■□□□□ 0.96
SYNPO-201ENST00000307662 CDC45O75419 566 aa21.06■□□□□ 0.96
SYNPO-201ENST00000307662 IPO7O95373 1038 aaKnown RBP21.06■□□□□ 0.96
SYNPO-201ENST00000307662 EVC2Q86UK5 1308 aa21.06■□□□□ 0.96
SYNPO-201ENST00000307662 CPLX2Q6PUV4 134 aaKnown RBP21.06■□□□□ 0.96
SYNPO-201ENST00000307662 CASKIN1Q8WXD9 1431 aa21.05■□□□□ 0.96
SYNPO-201ENST00000307662 RIPK4P57078 832 aa21.05■□□□□ 0.96
SYNPO-201ENST00000307662 RNF20Q5VTR2 975 aa21.05■□□□□ 0.96
SYNPO-201ENST00000307662 NGDNQ8NEJ9 315 aaKnown RBP21.05■□□□□ 0.96
SYNPO-201ENST00000307662 AKAP17AQ02040 695 aaKnown RBP21.04■□□□□ 0.96
SYNPO-201ENST00000307662 RNF214Q8ND24 703 aa21.04■□□□□ 0.96
SYNPO-201ENST00000307662 WASHC2AQ641Q2 1341 aa21.03■□□□□ 0.96
SYNPO-201ENST00000307662 ANKRD20A12PQ8NF67 263 aa21.03■□□□□ 0.96
SYNPO-201ENST00000307662 ACBD3Q9H3P7 528 aa21.03■□□□□ 0.96
SYNPO-201ENST00000307662 CAVIN1Q6NZI2 390 aaKnown RBP21.03■□□□□ 0.96
SYNPO-201ENST00000307662 HOOK1Q9UJC3 728 aaKnown RBP21.03■□□□□ 0.96
SYNPO-201ENST00000307662 DIAPH1O60610 1272 aaKnown RBP21.02■□□□□ 0.96
SYNPO-201ENST00000307662 TRIM29Q14134 588 aa21.02■□□□□ 0.96
SYNPO-201ENST00000307662 SYNE3Q6ZMZ3 975 aa21.02■□□□□ 0.96
SYNPO-201ENST00000307662 MARCH6O60337 910 aa21.02■□□□□ 0.96
SYNPO-201ENST00000307662 MBD3O95983 291 aa21.02■□□□□ 0.96
SYNPO-201ENST00000307662 ERICH3Q5RHP9 1530 aa21.02■□□□□ 0.96
SYNPO-201ENST00000307662 COG3Q96JB2 828 aa21.02■□□□□ 0.95
SYNPO-201ENST00000307662 BACH2Q9BYV9 841 aa21.02■□□□□ 0.95
SYNPO-201ENST00000307662 LRRFIP1Q32MZ4 808 aaKnown RBP21.01■□□□□ 0.95
SYNPO-201ENST00000307662 CCDC73Q6ZRK6 1079 aa21.01■□□□□ 0.95
SYNPO-201ENST00000307662 LTV1Q96GA3 475 aaPredicted RBP21.01■□□□□ 0.95
SYNPO-201ENST00000307662 LETM1O95202 739 aaPredicted RBP21.01■□□□□ 0.95
SYNPO-201ENST00000307662 HMGN5P82970 282 aaKnown RBP21.01■□□□□ 0.95
SYNPO-201ENST00000307662 IFIT2P09913 472 aaKnown RBP21.01■□□□□ 0.95
SYNPO-201ENST00000307662 ZNF644Q9H582 1327 aaPredicted RBP21.01■□□□□ 0.95
SYNPO-201ENST00000307662 CCDC66A2RUB6 948 aa21.01■□□□□ 0.95
SYNPO-201ENST00000307662 CCDC9Q9Y3X0 531 aaKnown RBP21■□□□□ 0.95
SYNPO-201ENST00000307662 STAC3Q96MF2 364 aa21■□□□□ 0.95
SYNPO-201ENST00000307662 FYCO1Q9BQS8 1478 aa21■□□□□ 0.95
SYNPO-201ENST00000307662 CPLX1O14810 134 aa20.99■□□□□ 0.95
SYNPO-201ENST00000307662 HSP90B2PQ58FF3 399 aa20.99■□□□□ 0.95
SYNPO-201ENST00000307662 NCOA2Q15596 1464 aa20.99■□□□□ 0.95
SYNPO-201ENST00000307662 TSPY26PQ9H489 355 aa20.98■□□□□ 0.95
SYNPO-201ENST00000307662 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.98■□□□□ 0.95
SYNPO-201ENST00000307662 PCMTD1Q96MG8 357 aaPredicted RBP20.98■□□□□ 0.95
SYNPO-201ENST00000307662 RBM10P98175 930 aaKnown RBP20.97■□□□□ 0.95
SYNPO-201ENST00000307662 AK7Q96M32 723 aa20.97■□□□□ 0.95
SYNPO-201ENST00000307662 RRBP1Q9P2E9 1410 aaKnown RBP20.97■□□□□ 0.95
SYNPO-201ENST00000307662 PATL2C9JE40 543 aaKnown RBP20.97■□□□□ 0.95
SYNPO-201ENST00000307662 CWC15Q9P013 229 aaKnown RBP20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms