RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 BRPF1P55201 1214 aaPredicted RBP15.46■□□□□ 0.07
USP38-201ENST00000307017 AIMP1Q12904 312 aaKnown RBP15.46■□□□□ 0.07
USP38-201ENST00000307017 CEP164Q9UPV0 1460 aa15.46■□□□□ 0.06
USP38-201ENST00000307017 NFKBIBQ15653 356 aa15.45■□□□□ 0.06
USP38-201ENST00000307017 CALRP27797 417 aaKnown RBP15.45■□□□□ 0.06
USP38-201ENST00000307017 FMNL2Q96PY5 1086 aa15.45■□□□□ 0.06
USP38-201ENST00000307017 FAM43AQ8N2R8 423 aa15.44■□□□□ 0.06
USP38-201ENST00000307017 PRDM10Q9NQV6 1147 aa15.44■□□□□ 0.06
USP38-201ENST00000307017 ERCC6Q03468 1493 aa15.44■□□□□ 0.06
USP38-201ENST00000307017 EEA1Q15075 1411 aa15.44■□□□□ 0.06
USP38-201ENST00000307017 CENPQQ7L2Z9 268 aaPredicted RBP15.44■□□□□ 0.06
USP38-201ENST00000307017 TCEAL9Q9UHQ7 104 aa15.43■□□□□ 0.06
USP38-201ENST00000307017 ATP2B1P20020 1258 aa15.43■□□□□ 0.06
USP38-201ENST00000307017 FAM177A1Q8N128 213 aaPredicted RBP15.43■□□□□ 0.06
USP38-201ENST00000307017 KIF3BO15066 747 aa15.43■□□□□ 0.06
USP38-201ENST00000307017 KIF27Q86VH2 1401 aa15.43■□□□□ 0.06
USP38-201ENST00000307017 ZFYVE27Q5T4F4 411 aa15.43■□□□□ 0.06
USP38-201ENST00000307017 CAVIN1Q6NZI2 390 aaKnown RBP15.42■□□□□ 0.06
USP38-201ENST00000307017 MAP7D2Q96T17 732 aa15.42■□□□□ 0.06
USP38-201ENST00000307017 CFAP44Q96MT7 982 aa15.42■□□□□ 0.06
USP38-201ENST00000307017 PHF23Q9BUL5 403 aaPredicted RBP15.42■□□□□ 0.06
USP38-201ENST00000307017 WDR70Q9NW82 654 aa15.42■□□□□ 0.06
USP38-201ENST00000307017 MINK1Q8N4C8 1332 aaPredicted RBP15.42■□□□□ 0.06
USP38-201ENST00000307017 ZBTB9Q96C00 473 aa15.41■□□□□ 0.06
USP38-201ENST00000307017 TPM2P07951 284 aa15.41■□□□□ 0.06
USP38-201ENST00000307017 C9orf78Q9NZ63 289 aaPredicted RBP15.41■□□□□ 0.06
USP38-201ENST00000307017 SKAP1Q86WV1 359 aa15.4■□□□□ 0.06
USP38-201ENST00000307017 SASS6Q6UVJ0 657 aa15.4■□□□□ 0.06
USP38-201ENST00000307017 ERICH4A6NGS2 130 aa15.39■□□□□ 0.05
USP38-201ENST00000307017 TPM1P09493 284 aa15.39■□□□□ 0.05
USP38-201ENST00000307017 TRIM29Q14134 588 aa15.39■□□□□ 0.05
USP38-201ENST00000307017 HSP90AB3PQ58FF7 597 aa15.39■□□□□ 0.05
USP38-201ENST00000307017 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.39■□□□□ 0.052e-7■■■■■ 168.6
USP38-201ENST00000307017 STK3Q13188 491 aa15.39■□□□□ 0.05
USP38-201ENST00000307017 RRP12Q5JTH9 1297 aaKnown RBP15.39■□□□□ 0.05
USP38-201ENST00000307017 CAGE1Q8TC20 777 aa15.38■□□□□ 0.05
USP38-201ENST00000307017 TEX35Q5T0J7 233 aa15.38■□□□□ 0.05
USP38-201ENST00000307017 RUFY1Q96T51 708 aa15.38■□□□□ 0.05
USP38-201ENST00000307017 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.38■□□□□ 0.05
USP38-201ENST00000307017 CCDC34Q96HJ3 373 aa15.38■□□□□ 0.05
USP38-201ENST00000307017 PKNOX2Q96KN3 472 aa15.38■□□□□ 0.05
USP38-201ENST00000307017 MNS1Q8NEH6 495 aa15.38■□□□□ 0.05
USP38-201ENST00000307017 IFIT2P09913 472 aaKnown RBP15.37■□□□□ 0.05
USP38-201ENST00000307017 CCDC70Q6NSX1 233 aa15.37■□□□□ 0.05
USP38-201ENST00000307017 NEUROD6Q96NK8 337 aa15.37■□□□□ 0.05
USP38-201ENST00000307017 CPLX1O14810 134 aa15.37■□□□□ 0.05
USP38-201ENST00000307017 SMC2O95347 1197 aa15.37■□□□□ 0.05
USP38-201ENST00000307017 EVA1CP58658 441 aa15.37■□□□□ 0.05
USP38-201ENST00000307017 MEX3CQ5U5Q3 659 aaKnown RBP15.37■□□□□ 0.05
USP38-201ENST00000307017 ZKSCAN2Q63HK3 967 aa15.37■□□□□ 0.05
USP38-201ENST00000307017 FAM193AP78312 1265 aa15.37■□□□□ 0.05
USP38-201ENST00000307017 GPS2Q13227 327 aa15.37■□□□□ 0.05
USP38-201ENST00000307017 NASPP49321 788 aaPredicted RBP15.37■□□□□ 0.05
USP38-201ENST00000307017 SYNE3Q6ZMZ3 975 aa15.37■□□□□ 0.05
USP38-201ENST00000307017 SMC3Q9UQE7 1217 aa15.36■□□□□ 0.05
USP38-201ENST00000307017 CUX2O14529 1486 aa15.36■□□□□ 0.05
USP38-201ENST00000307017 VPS37DQ86XT2 251 aa15.36■□□□□ 0.05
USP38-201ENST00000307017 TRIM34Q9BYJ4 488 aa15.36■□□□□ 0.05
USP38-201ENST00000307017 RBM25P49756 843 aaKnown RBP15.35■□□□□ 0.05
USP38-201ENST00000307017 TMX1Q9H3N1 280 aa15.35■□□□□ 0.05
USP38-201ENST00000307017 RIPK4P57078 832 aa15.35■□□□□ 0.05
USP38-201ENST00000307017 PRPF40AO75400 957 aaKnown RBP15.35■□□□□ 0.05
USP38-201ENST00000307017 HSP90AB2PQ58FF8 381 aa15.35■□□□□ 0.05
USP38-201ENST00000307017 C1orf141Q5JVX7 400 aa15.35■□□□□ 0.05
USP38-201ENST00000307017 CDCA7LQ96GN5 454 aa15.34■□□□□ 0.05
USP38-201ENST00000307017 MYBBP1AQ9BQG0 1328 aaKnown RBP15.34■□□□□ 0.05
USP38-201ENST00000307017 NLRP13Q86W25 1043 aa15.34■□□□□ 0.05
USP38-201ENST00000307017 C22orf23Q9BZE7 217 aa15.34■□□□□ 0.05
USP38-201ENST00000307017 ZFP91Q96JP5 570 aaPredicted RBP15.33■□□□□ 0.05
USP38-201ENST00000307017 AK7Q96M32 723 aa15.33■□□□□ 0.04
USP38-201ENST00000307017 FKBP5Q13451 457 aaPredicted RBP15.33■□□□□ 0.04
USP38-201ENST00000307017 CTDP1Q9Y5B0 961 aaPredicted RBP15.33■□□□□ 0.04
USP38-201ENST00000307017 WASHC4Q2M389 1173 aa15.33■□□□□ 0.04
USP38-201ENST00000307017 SPINK5Q9NQ38 1064 aaPredicted RBP15.33■□□□□ 0.04
USP38-201ENST00000307017 H0YHG0 523 aa15.32■□□□□ 0.04
USP38-201ENST00000307017 CT47A1Q5JQC4 288 aaPredicted RBP15.32■□□□□ 0.04
USP38-201ENST00000307017 SKOR2Q2VWA4 1001 aaPredicted RBP15.32■□□□□ 0.04
USP38-201ENST00000307017 TERF2IPQ9NYB0 399 aa15.32■□□□□ 0.04
USP38-201ENST00000307017 TRERF1Q96PN7 1200 aa15.32■□□□□ 0.04
USP38-201ENST00000307017 DNAJC2Q99543 621 aaKnown RBP15.32■□□□□ 0.04
USP38-201ENST00000307017 KIF15Q9NS87 1388 aa15.31■□□□□ 0.04
USP38-201ENST00000307017 PIBF1Q8WXW3 757 aa15.31■□□□□ 0.04
USP38-201ENST00000307017 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.31■□□□□ 0.04
USP38-201ENST00000307017 RB1CC1Q8TDY2 1594 aa15.31■□□□□ 0.04
USP38-201ENST00000307017 CENPHQ9H3R5 247 aa15.31■□□□□ 0.04
USP38-201ENST00000307017 CARMIL1Q5VZK9 1371 aa15.3■□□□□ 0.04
USP38-201ENST00000307017 TRAK2O60296 914 aa15.29■□□□□ 0.04
USP38-201ENST00000307017 TRIM5Q9C035 493 aa15.29■□□□□ 0.04
USP38-201ENST00000307017 EPS15P42566 896 aa15.29■□□□□ 0.04
USP38-201ENST00000307017 CHMP5Q9NZZ3 219 aa15.29■□□□□ 0.04
USP38-201ENST00000307017 IPO7O95373 1038 aaKnown RBP15.29■□□□□ 0.04
USP38-201ENST00000307017 FIBPO43427 364 aa15.29■□□□□ 0.04
USP38-201ENST00000307017 HDGFP51858 240 aaKnown RBP15.29■□□□□ 0.04
USP38-201ENST00000307017 WASHC2CQ9Y4E1 1318 aa15.28■□□□□ 0.04
USP38-201ENST00000307017 DZIP1LQ8IYY4 767 aaKnown RBP15.28■□□□□ 0.04
USP38-201ENST00000307017 CGNL1Q0VF96 1302 aa15.27■□□□□ 0.03
USP38-201ENST00000307017 TEFQ10587 303 aa15.27■□□□□ 0.03
USP38-201ENST00000307017 ODF2Q5BJF6 829 aa15.27■□□□□ 0.03
USP38-201ENST00000307017 AXDND1Q5T1B0 1012 aaPredicted RBP15.27■□□□□ 0.03
USP38-201ENST00000307017 SRRTQ9BXP5 876 aaKnown RBP15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms