RNA–Protein interactions for RNA: ENST00000306658.7

KRT28-201, Transcript of keratin 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KRT28, Length 1,685 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28-201ENST00000306658 VGFO15240 615 aaPredicted RBP24.59■■□□□ 1.53
KRT28-201ENST00000306658 FER1L4A9Z1Z3 1794 aa24.58■■□□□ 1.53
KRT28-201ENST00000306658 NRXN1Q9ULB1 1477 aa24.58■■□□□ 1.52
KRT28-201ENST00000306658 KIAA1210Q9ULL0 1709 aa24.57■■□□□ 1.52
KRT28-201ENST00000306658 TNRQ92752 1358 aa24.56■■□□□ 1.52
KRT28-201ENST00000306658 NEXMIFQ5QGS0 1516 aa24.54■■□□□ 1.52
KRT28-201ENST00000306658 MYO5BQ9ULV0 1848 aa24.54■■□□□ 1.52
KRT28-201ENST00000306658 ZFYVE9O95405 1425 aa24.53■■□□□ 1.52
KRT28-201ENST00000306658 DDX10Q13206 875 aaKnown RBP24.52■■□□□ 1.52
KRT28-201ENST00000306658 PIK3C2GO75747 1445 aa24.5■■□□□ 1.51
KRT28-201ENST00000306658 C3P01024 1663 aa24.5■■□□□ 1.51
KRT28-201ENST00000306658 ST20-MTHFSA0A0A6YYL1 179 aa24.5■■□□□ 1.51
KRT28-201ENST00000306658 CFAP70Q5T0N1 1121 aa24.5■■□□□ 1.51
KRT28-201ENST00000306658 A2ML1A8K2U0 1454 aa24.5■■□□□ 1.51
KRT28-201ENST00000306658 CEBPAP49715 358 aaPredicted RBP24.5■■□□□ 1.51
KRT28-201ENST00000306658 WASHC2AQ641Q2 1341 aa24.49■■□□□ 1.51
KRT28-201ENST00000306658 C14orf93Q9H972 538 aaKnown RBP24.48■■□□□ 1.51
KRT28-201ENST00000306658 NUTM2DQ5VT03 806 aaPredicted RBP24.46■■□□□ 1.51
KRT28-201ENST00000306658 CCDC7Q96M83 1385 aa24.46■■□□□ 1.51
KRT28-201ENST00000306658 SCAF11Q99590 1463 aaKnown RBP24.46■■□□□ 1.51
KRT28-201ENST00000306658 NLRP1Q9C000 1473 aa24.46■■□□□ 1.51
KRT28-201ENST00000306658 C11orf95C9JLR9 678 aaPredicted RBP24.45■■□□□ 1.5
KRT28-201ENST00000306658 POLR1AO95602 1720 aaPredicted RBP24.45■■□□□ 1.5
KRT28-201ENST00000306658 KDM5AP29375 1690 aaKnown RBP24.45■■□□□ 1.5
KRT28-201ENST00000306658 HDGFP51858 240 aaKnown RBP24.43■■□□□ 1.5
KRT28-201ENST00000306658 SETBP1Q9Y6X0 1596 aa24.43■■□□□ 1.5
KRT28-201ENST00000306658 IQGAP1P46940 1657 aa24.42■■□□□ 1.5
KRT28-201ENST00000306658 ADAMTSL3P82987 1691 aa24.42■■□□□ 1.5
KRT28-201ENST00000306658 KIF7Q2M1P5 1343 aa24.42■■□□□ 1.5
KRT28-201ENST00000306658 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.42■■□□□ 1.5
KRT28-201ENST00000306658 EIF3AQ14152 1382 aaKnown RBP24.41■■□□□ 1.5
KRT28-201ENST00000306658 RIMS2Q9UQ26 1411 aa24.41■■□□□ 1.5
KRT28-201ENST00000306658 RIMS1Q86UR5 1692 aaKnown RBP24.41■■□□□ 1.5
KRT28-201ENST00000306658 PLPPR3Q6T4P5 718 aa24.4■■□□□ 1.5
KRT28-201ENST00000306658 MIER1Q8N108 512 aa24.38■■□□□ 1.49
KRT28-201ENST00000306658 UBR1Q8IWV7 1749 aa24.38■■□□□ 1.49
KRT28-201ENST00000306658 TESK2Q96S53 571 aa24.36■■□□□ 1.49
KRT28-201ENST00000306658 ADGRB1O14514 1584 aa24.35■■□□□ 1.49
KRT28-201ENST00000306658 SLC24A1O60721 1099 aa24.34■■□□□ 1.49
KRT28-201ENST00000306658 TMEM2Q9UHN6 1383 aa24.34■■□□□ 1.49
KRT28-201ENST00000306658 TMF1P82094 1093 aa24.33■■□□□ 1.49
KRT28-201ENST00000306658 TMEM132EQ6IEE7 984 aa24.32■■□□□ 1.48
KRT28-201ENST00000306658 POLR3GLQ9BT43 218 aa24.31■■□□□ 1.48
KRT28-201ENST00000306658 THEMISQ8N1K5 641 aaPredicted RBP24.3■■□□□ 1.48
KRT28-201ENST00000306658 MYO3AQ8NEV4 1616 aa24.28■■□□□ 1.48
KRT28-201ENST00000306658 ALKQ9UM73 1620 aa24.28■■□□□ 1.48
KRT28-201ENST00000306658 TRAK1Q9UPV9 953 aa24.28■■□□□ 1.48
KRT28-201ENST00000306658 SETD1BQ9UPS6 1966 aaKnown RBP24.27■■□□□ 1.48
KRT28-201ENST00000306658 EID1Q9Y6B2 187 aa24.27■■□□□ 1.48
KRT28-201ENST00000306658 ANP32CO43423 234 aa24.26■■□□□ 1.47
KRT28-201ENST00000306658 CDCA8Q53HL2 280 aa24.26■■□□□ 1.47
KRT28-201ENST00000306658 SENP3Q9H4L4 574 aaPredicted RBP24.26■■□□□ 1.47
KRT28-201ENST00000306658 CENPJQ9HC77 1338 aaPredicted RBP24.25■■□□□ 1.47
KRT28-201ENST00000306658 DISP3Q9P2K9 1392 aa24.25■■□□□ 1.47
KRT28-201ENST00000306658 SLIT1O75093 1534 aa24.23■■□□□ 1.47
KRT28-201ENST00000306658 SBNO2Q9Y2G9 1366 aa24.23■■□□□ 1.47
KRT28-201ENST00000306658 TXNDC2Q86VQ3 553 aa24.23■■□□□ 1.47
KRT28-201ENST00000306658 CEP170BQ9Y4F5 1589 aaPredicted RBP24.22■■□□□ 1.47
KRT28-201ENST00000306658 ARHGAP23Q9P227 1491 aa24.22■■□□□ 1.47
KRT28-201ENST00000306658 ASXL1Q8IXJ9 1541 aa24.22■■□□□ 1.47
KRT28-201ENST00000306658 BCANQ96GW7 911 aa24.21■■□□□ 1.47
KRT28-201ENST00000306658 PTPRMP28827 1452 aa24.21■■□□□ 1.47
KRT28-201ENST00000306658 YTHDC2Q9H6S0 1430 aaKnown RBP24.21■■□□□ 1.47
KRT28-201ENST00000306658 LTKP29376 864 aa24.2■■□□□ 1.46
KRT28-201ENST00000306658 PLEKHG1Q9ULL1 1385 aa24.2■■□□□ 1.46
KRT28-201ENST00000306658 STK26Q9P289 416 aa24.19■■□□□ 1.46
KRT28-201ENST00000306658 NRXN3Q9Y4C0 1643 aa24.18■■□□□ 1.46
KRT28-201ENST00000306658 ARHGEF28Q8N1W1 1705 aaKnown RBP24.17■■□□□ 1.46
KRT28-201ENST00000306658 SETD1AO15047 1707 aaKnown RBP24.16■■□□□ 1.46
KRT28-201ENST00000306658 ZNF142P52746 1687 aaPredicted RBP24.16■■□□□ 1.46
KRT28-201ENST00000306658 QRICH2Q9H0J4 1663 aa24.15■■□□□ 1.46
KRT28-201ENST00000306658 LRPPRCP42704 1394 aaKnown RBP24.14■■□□□ 1.45
KRT28-201ENST00000306658 ABCC11Q96J66 1382 aa24.13■■□□□ 1.45
KRT28-201ENST00000306658 POGKQ9P215 609 aa24.11■■□□□ 1.45
KRT28-201ENST00000306658 METP08581 1390 aa24.11■■□□□ 1.45
KRT28-201ENST00000306658 ADAMTS13Q76LX8 1427 aa24.11■■□□□ 1.45
KRT28-201ENST00000306658 DLC1Q96QB1 1528 aa24.1■■□□□ 1.45
KRT28-201ENST00000306658 PRAM1Q96QH2 718 aa24.09■■□□□ 1.45
KRT28-201ENST00000306658 ANKLE2Q86XL3 938 aa24.08■■□□□ 1.45
KRT28-201ENST00000306658 CCER2I3L3R5 266 aa24.08■■□□□ 1.44
KRT28-201ENST00000306658 EVC2Q86UK5 1308 aa24.08■■□□□ 1.44
KRT28-201ENST00000306658 MED14O60244 1454 aa24.07■■□□□ 1.44
KRT28-201ENST00000306658 PUS7Q96PZ0 661 aaKnown RBP24.07■■□□□ 1.44
KRT28-201ENST00000306658 TBX22Q9Y458 520 aa24.07■■□□□ 1.44
KRT28-201ENST00000306658 SAFB2Q14151 953 aaKnown RBP eCLIP24.06■■□□□ 1.44
KRT28-201ENST00000306658 SIRT1Q96EB6 747 aa24.06■■□□□ 1.44
KRT28-201ENST00000306658 SLC26A8Q96RN1 970 aa24.05■■□□□ 1.44
KRT28-201ENST00000306658 PRKRIP1Q9H875 184 aaPredicted RBP24.05■■□□□ 1.44
KRT28-201ENST00000306658 PANK3Q9H999 370 aa24.05■■□□□ 1.44
KRT28-201ENST00000306658 TECPR2O15040 1411 aa24.03■■□□□ 1.44
KRT28-201ENST00000306658 DIP2AQ14689 1571 aa24.03■■□□□ 1.44
KRT28-201ENST00000306658 KNDC1Q76NI1 1749 aa24.02■■□□□ 1.44
KRT28-201ENST00000306658 FAM135BQ49AJ0 1406 aa24.01■■□□□ 1.43
KRT28-201ENST00000306658 PER1O15534 1290 aaPredicted RBP24.01■■□□□ 1.43
KRT28-201ENST00000306658 MINK1Q8N4C8 1332 aaPredicted RBP24■■□□□ 1.43
KRT28-201ENST00000306658 WAPLQ7Z5K2 1190 aa23.99■■□□□ 1.43
KRT28-201ENST00000306658 TULP4Q9NRJ4 1543 aa23.99■■□□□ 1.43
KRT28-201ENST00000306658 MYOM1P52179 1685 aa23.98■■□□□ 1.43
KRT28-201ENST00000306658 CPS1P31327 1500 aa23.98■■□□□ 1.43
KRT28-201ENST00000306658 KTN1Q86UP2 1357 aaKnown RBP23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms