RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 SLC52A1Q9NWF4 448 aa21.71■■□□□ 1.07
LSM6-201ENST00000296581 RPGRIP1LQ68CZ1 1315 aa21.7■■□□□ 1.06
LSM6-201ENST00000296581 ARID4BQ4LE39 1312 aaPredicted RBP21.7■■□□□ 1.06
LSM6-201ENST00000296581 ST20-MTHFSA0A0A6YYL1 179 aa21.69■■□□□ 1.06
LSM6-201ENST00000296581 IQGAP1P46940 1657 aa21.69■■□□□ 1.06
LSM6-201ENST00000296581 SPATA31D1Q6ZQQ2 1576 aa21.69■■□□□ 1.06
LSM6-201ENST00000296581 CHGAP10645 457 aaKnown RBP21.67■■□□□ 1.06
LSM6-201ENST00000296581 IDI1Q13907 227 aa21.67■■□□□ 1.06
LSM6-201ENST00000296581 MLECQ14165 292 aa21.67■■□□□ 1.06
LSM6-201ENST00000296581 ADGRF5Q8IZF2 1346 aa21.67■■□□□ 1.06
LSM6-201ENST00000296581 TMEM131LA2VDJ0 1609 aa21.66■■□□□ 1.06
LSM6-201ENST00000296581 FBXO31Q5XUX0 539 aaPredicted RBP21.66■■□□□ 1.06
LSM6-201ENST00000296581 NEXMIFQ5QGS0 1516 aa21.65■■□□□ 1.06
LSM6-201ENST00000296581 MYO5BQ9ULV0 1848 aa21.64■■□□□ 1.05
LSM6-201ENST00000296581 PIK3C2GO75747 1445 aa21.62■■□□□ 1.05
LSM6-201ENST00000296581 SCAF11Q99590 1463 aaKnown RBP21.62■■□□□ 1.05
LSM6-201ENST00000296581 ZMYM3Q14202 1370 aa21.61■■□□□ 1.05
LSM6-201ENST00000296581 SETBP1Q9Y6X0 1596 aa21.6■■□□□ 1.05
LSM6-201ENST00000296581 ANP32CO43423 234 aa21.59■■□□□ 1.05
LSM6-201ENST00000296581 ESF1Q9H501 851 aaKnown RBP21.59■■□□□ 1.05
LSM6-201ENST00000296581 ZFYVE9O95405 1425 aa21.59■■□□□ 1.05
LSM6-201ENST00000296581 CFAP70Q5T0N1 1121 aa21.58■■□□□ 1.05
LSM6-201ENST00000296581 TESK2Q96S53 571 aa21.58■■□□□ 1.05
LSM6-201ENST00000296581 VGFO15240 615 aaPredicted RBP21.55■■□□□ 1.04
LSM6-201ENST00000296581 C14orf93Q9H972 538 aaKnown RBP21.55■■□□□ 1.04
LSM6-201ENST00000296581 CENPBP07199 599 aaPredicted RBP21.54■■□□□ 1.04
LSM6-201ENST00000296581 ADGRB1O14514 1584 aa21.54■■□□□ 1.04
LSM6-201ENST00000296581 EIF3AQ14152 1382 aaKnown RBP21.53■■□□□ 1.04
LSM6-201ENST00000296581 CCER2I3L3R5 266 aa21.53■■□□□ 1.04
LSM6-201ENST00000296581 A2ML1A8K2U0 1454 aa21.52■■□□□ 1.04
LSM6-201ENST00000296581 BCL11AQ9H165 835 aa21.52■■□□□ 1.03
LSM6-201ENST00000296581 MYO3AQ8NEV4 1616 aa21.51■■□□□ 1.03
LSM6-201ENST00000296581 DISP3Q9P2K9 1392 aa21.5■■□□□ 1.03
LSM6-201ENST00000296581 FER1L4A9Z1Z3 1794 aa21.49■■□□□ 1.03
LSM6-201ENST00000296581 POLR3GLQ9BT43 218 aa21.49■■□□□ 1.03
LSM6-201ENST00000296581 KDM5AP29375 1690 aaKnown RBP21.48■■□□□ 1.03
LSM6-201ENST00000296581 TNRQ92752 1358 aa21.48■■□□□ 1.03
LSM6-201ENST00000296581 TMF1P82094 1093 aa21.48■■□□□ 1.03
LSM6-201ENST00000296581 STAG3Q9UJ98 1225 aa21.46■■□□□ 1.03
LSM6-201ENST00000296581 NUTM2DQ5VT03 806 aaPredicted RBP21.46■■□□□ 1.03
LSM6-201ENST00000296581 C3P01024 1663 aa21.45■■□□□ 1.02
LSM6-201ENST00000296581 YTHDC1Q96MU7 727 aaKnown RBP21.44■■□□□ 1.02
LSM6-201ENST00000296581 SBNO2Q9Y2G9 1366 aa21.43■■□□□ 1.02
LSM6-201ENST00000296581 SLC24A1O60721 1099 aa21.43■■□□□ 1.02
LSM6-201ENST00000296581 PRKRIP1Q9H875 184 aaPredicted RBP21.43■■□□□ 1.02
LSM6-201ENST00000296581 RIMS2Q9UQ26 1411 aa21.42■■□□□ 1.02
LSM6-201ENST00000296581 ASXL1Q8IXJ9 1541 aa21.41■■□□□ 1.02
LSM6-201ENST00000296581 UBR1Q8IWV7 1749 aa21.41■■□□□ 1.02
LSM6-201ENST00000296581 NLRP1Q9C000 1473 aa21.4■■□□□ 1.02
LSM6-201ENST00000296581 CDCA8Q53HL2 280 aa21.39■■□□□ 1.02
LSM6-201ENST00000296581 TMEM132EQ6IEE7 984 aa21.39■■□□□ 1.02
LSM6-201ENST00000296581 ARHGEF28Q8N1W1 1705 aaKnown RBP21.39■■□□□ 1.01
LSM6-201ENST00000296581 ALKQ9UM73 1620 aa21.38■■□□□ 1.01
LSM6-201ENST00000296581 QRICH2Q9H0J4 1663 aa21.38■■□□□ 1.01
LSM6-201ENST00000296581 CENPJQ9HC77 1338 aaPredicted RBP21.37■■□□□ 1.01
LSM6-201ENST00000296581 TRAK1Q9UPV9 953 aa21.36■■□□□ 1.01
LSM6-201ENST00000296581 SETD1AO15047 1707 aaKnown RBP21.35■■□□□ 1.01
LSM6-201ENST00000296581 CEBPAP49715 358 aaPredicted RBP21.35■■□□□ 1.01
LSM6-201ENST00000296581 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.35■■□□□ 1.01
LSM6-201ENST00000296581 MYOM1P52179 1685 aa21.34■■□□□ 1.01
LSM6-201ENST00000296581 NRXN3Q9Y4C0 1643 aa21.33■■□□□ 1.01
LSM6-201ENST00000296581 TMEM2Q9UHN6 1383 aa21.32■■□□□ 1
LSM6-201ENST00000296581 ADAMTSL3P82987 1691 aa21.32■■□□□ 1
LSM6-201ENST00000296581 PER1O15534 1290 aaPredicted RBP21.31■■□□□ 1
LSM6-201ENST00000296581 PTPRMP28827 1452 aa21.31■■□□□ 1
LSM6-201ENST00000296581 YTHDC2Q9H6S0 1430 aaKnown RBP21.31■■□□□ 1
LSM6-201ENST00000296581 RIMS1Q86UR5 1692 aaKnown RBP21.3■■□□□ 1
LSM6-201ENST00000296581 HDGFP51858 240 aaKnown RBP21.3■■□□□ 1
LSM6-201ENST00000296581 KTN1Q86UP2 1357 aaKnown RBP21.3■■□□□ 1
LSM6-201ENST00000296581 PANK3Q9H999 370 aa21.29■■□□□ 1
LSM6-201ENST00000296581 DLC1Q96QB1 1528 aa21.26■□□□□ 0.99
LSM6-201ENST00000296581 SLIT1O75093 1534 aa21.25■□□□□ 0.99
LSM6-201ENST00000296581 ARHGAP23Q9P227 1491 aa21.25■□□□□ 0.99
LSM6-201ENST00000296581 RALBP1Q15311 655 aa21.24■□□□□ 0.99
LSM6-201ENST00000296581 CCDC184Q52MB2 194 aa21.24■□□□□ 0.99
LSM6-201ENST00000296581 SENP3Q9H4L4 574 aaPredicted RBP21.24■□□□□ 0.99
LSM6-201ENST00000296581 LRPPRCP42704 1394 aaKnown RBP21.24■□□□□ 0.99
LSM6-201ENST00000296581 TULP4Q9NRJ4 1543 aa21.24■□□□□ 0.99
LSM6-201ENST00000296581 PUS7Q96PZ0 661 aaKnown RBP21.23■□□□□ 0.99
LSM6-201ENST00000296581 STK26Q9P289 416 aa21.23■□□□□ 0.99
LSM6-201ENST00000296581 PARD3Q8TEW0 1356 aa21.22■□□□□ 0.99
LSM6-201ENST00000296581 PLEKHG1Q9ULL1 1385 aa21.21■□□□□ 0.99
LSM6-201ENST00000296581 ABCC11Q96J66 1382 aa21.2■□□□□ 0.98
LSM6-201ENST00000296581 PRKCSHP14314 528 aaPredicted RBP21.2■□□□□ 0.98
LSM6-201ENST00000296581 MRS2Q9HD23 443 aa21.2■□□□□ 0.98
LSM6-201ENST00000296581 KNDC1Q76NI1 1749 aa21.2■□□□□ 0.98
LSM6-201ENST00000296581 EVC2Q86UK5 1308 aa21.19■□□□□ 0.98
LSM6-201ENST00000296581 PLPPR3Q6T4P5 718 aa21.19■□□□□ 0.98
LSM6-201ENST00000296581 CEP170BQ9Y4F5 1589 aaPredicted RBP21.19■□□□□ 0.98
LSM6-201ENST00000296581 MYBBP1AQ9BQG0 1328 aaKnown RBP21.18■□□□□ 0.98
LSM6-201ENST00000296581 METP08581 1390 aa21.18■□□□□ 0.98
LSM6-201ENST00000296581 ADAMTS13Q76LX8 1427 aa21.18■□□□□ 0.98
LSM6-201ENST00000296581 LTKP29376 864 aa21.18■□□□□ 0.98
LSM6-201ENST00000296581 PRAM1Q96QH2 718 aa21.17■□□□□ 0.98
LSM6-201ENST00000296581 CNGB1Q14028 1251 aaPredicted RBP21.17■□□□□ 0.98
LSM6-201ENST00000296581 THEMISQ8N1K5 641 aaPredicted RBP21.17■□□□□ 0.98
LSM6-201ENST00000296581 TECPR2O15040 1411 aa21.16■□□□□ 0.98
LSM6-201ENST00000296581 ZNF142P52746 1687 aaPredicted RBP21.16■□□□□ 0.98
LSM6-201ENST00000296581 TXNDC2Q86VQ3 553 aa21.16■□□□□ 0.98
LSM6-201ENST00000296581 NPC1L1Q9UHC9 1359 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms