RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 MYOM2P54296 1465 aa31.77■■■□□ 2.68
CDX1-201ENST00000231656 TRPM1Q7Z4N2 1603 aa31.76■■■□□ 2.67
CDX1-201ENST00000231656 PLPPR3Q6T4P5 718 aa31.73■■■□□ 2.67
CDX1-201ENST00000231656 STAG3Q9UJ98 1225 aa31.73■■■□□ 2.67
CDX1-201ENST00000231656 NEXMIFQ5QGS0 1516 aa31.73■■■□□ 2.67
CDX1-201ENST00000231656 A2ML1A8K2U0 1454 aa31.71■■■□□ 2.67
CDX1-201ENST00000231656 YTHDC1Q96MU7 727 aaKnown RBP31.69■■■□□ 2.66
CDX1-201ENST00000231656 ADGRF5Q8IZF2 1346 aa31.69■■■□□ 2.66
CDX1-201ENST00000231656 NLRP1Q9C000 1473 aa31.69■■■□□ 2.66
CDX1-201ENST00000231656 NRXN1Q9ULB1 1477 aa31.69■■■□□ 2.66
CDX1-201ENST00000231656 KDM5AP29375 1690 aaKnown RBP31.67■■■□□ 2.66
CDX1-201ENST00000231656 POLR1AO95602 1720 aaPredicted RBP31.66■■■□□ 2.66
CDX1-201ENST00000231656 ROCK2O75116 1388 aaKnown RBP31.66■■■□□ 2.66
CDX1-201ENST00000231656 UBR1Q8IWV7 1749 aa31.65■■■□□ 2.66
CDX1-201ENST00000231656 WASHC2AQ641Q2 1341 aa31.65■■■□□ 2.66
CDX1-201ENST00000231656 NBPF1Q3BBV0 1214 aa31.63■■■□□ 2.65
CDX1-201ENST00000231656 VGFO15240 615 aaPredicted RBP31.63■■■□□ 2.65
CDX1-201ENST00000231656 KIAA1210Q9ULL0 1709 aa31.62■■■□□ 2.65
CDX1-201ENST00000231656 NUTM2DQ5VT03 806 aaPredicted RBP31.62■■■□□ 2.65
CDX1-201ENST00000231656 CARD11Q9BXL7 1154 aa31.62■■■□□ 2.65
CDX1-201ENST00000231656 ZFYVE9O95405 1425 aa31.61■■■□□ 2.65
CDX1-201ENST00000231656 MYO3AQ8NEV4 1616 aa31.61■■■□□ 2.65
CDX1-201ENST00000231656 GPRASP1Q5JY77 1395 aa31.61■■■□□ 2.65
CDX1-201ENST00000231656 PIK3C2GO75747 1445 aa31.6■■■□□ 2.65
CDX1-201ENST00000231656 PTPRMP28827 1452 aa31.59■■■□□ 2.65
CDX1-201ENST00000231656 LAMC1P11047 1609 aa31.58■■■□□ 2.65
CDX1-201ENST00000231656 SETD1BQ9UPS6 1966 aaKnown RBP31.57■■■□□ 2.65
CDX1-201ENST00000231656 RIMS2Q9UQ26 1411 aa31.56■■■□□ 2.64
CDX1-201ENST00000231656 USP47Q96K76 1375 aa31.56■■■□□ 2.64
CDX1-201ENST00000231656 CCDC7Q96M83 1385 aa31.55■■■□□ 2.64
CDX1-201ENST00000231656 CFAP70Q5T0N1 1121 aa31.55■■■□□ 2.64
CDX1-201ENST00000231656 C11orf95C9JLR9 678 aaPredicted RBP31.54■■■□□ 2.64
CDX1-201ENST00000231656 TMEM2Q9UHN6 1383 aa31.51■■■□□ 2.63
CDX1-201ENST00000231656 CEP170BQ9Y4F5 1589 aaPredicted RBP31.5■■■□□ 2.63
CDX1-201ENST00000231656 C14orf93Q9H972 538 aaKnown RBP31.5■■■□□ 2.63
CDX1-201ENST00000231656 ANP32CO43423 234 aa31.49■■■□□ 2.63
CDX1-201ENST00000231656 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.48■■■□□ 2.63
CDX1-201ENST00000231656 SCAF1Q9H7N4 1312 aaKnown RBP31.48■■■□□ 2.63
CDX1-201ENST00000231656 ZNF142P52746 1687 aaPredicted RBP31.46■■■□□ 2.63
CDX1-201ENST00000231656 SETBP1Q9Y6X0 1596 aa31.46■■■□□ 2.63
CDX1-201ENST00000231656 HDGFP51858 240 aaKnown RBP31.45■■■□□ 2.63
CDX1-201ENST00000231656 IQGAP1P46940 1657 aa31.44■■■□□ 2.62
CDX1-201ENST00000231656 THEMISQ8N1K5 641 aaPredicted RBP31.44■■■□□ 2.62
CDX1-201ENST00000231656 KIF7Q2M1P5 1343 aa31.44■■■□□ 2.62
CDX1-201ENST00000231656 CCER2I3L3R5 266 aa31.43■■■□□ 2.62
CDX1-201ENST00000231656 SLIT1O75093 1534 aa31.43■■■□□ 2.62
CDX1-201ENST00000231656 KDM4FA0A1W2PPD8 638 aa31.42■■■□□ 2.62
CDX1-201ENST00000231656 ARHGAP23Q9P227 1491 aa31.42■■■□□ 2.62
CDX1-201ENST00000231656 ADGRB1O14514 1584 aa31.41■■■□□ 2.62
CDX1-201ENST00000231656 SENP3Q9H4L4 574 aaPredicted RBP31.41■■■□□ 2.62
CDX1-201ENST00000231656 SCAF11Q99590 1463 aaKnown RBP31.41■■■□□ 2.62
CDX1-201ENST00000231656 ST20-MTHFSA0A0A6YYL1 179 aa31.4■■■□□ 2.62
CDX1-201ENST00000231656 ALKQ9UM73 1620 aa31.38■■■□□ 2.61
CDX1-201ENST00000231656 LTKP29376 864 aa31.37■■■□□ 2.61
CDX1-201ENST00000231656 TMEM132EQ6IEE7 984 aa31.36■■■□□ 2.61
CDX1-201ENST00000231656 NRXN3Q9Y4C0 1643 aa31.36■■■□□ 2.61
CDX1-201ENST00000231656 TXNDC2Q86VQ3 553 aa31.35■■■□□ 2.61
CDX1-201ENST00000231656 EID1Q9Y6B2 187 aa31.34■■■□□ 2.61
CDX1-201ENST00000231656 ASXL1Q8IXJ9 1541 aa31.33■■■□□ 2.61
CDX1-201ENST00000231656 SETD1AO15047 1707 aaKnown RBP31.32■■■□□ 2.61
CDX1-201ENST00000231656 PLEKHG1Q9ULL1 1385 aa31.31■■■□□ 2.6
CDX1-201ENST00000231656 EIF3AQ14152 1382 aaKnown RBP31.29■■■□□ 2.6
CDX1-201ENST00000231656 TESK2Q96S53 571 aa31.26■■■□□ 2.59
CDX1-201ENST00000231656 TRAK1Q9UPV9 953 aa31.25■■■□□ 2.59
CDX1-201ENST00000231656 BCANQ96GW7 911 aa31.25■■■□□ 2.59
CDX1-201ENST00000231656 ADAMTS13Q76LX8 1427 aa31.23■■■□□ 2.59
CDX1-201ENST00000231656 YTHDC2Q9H6S0 1430 aaKnown RBP31.22■■■□□ 2.59
CDX1-201ENST00000231656 ARHGEF28Q8N1W1 1705 aaKnown RBP31.21■■■□□ 2.59
CDX1-201ENST00000231656 GTF3C3Q9Y5Q9 886 aa31.2■■■□□ 2.59
CDX1-201ENST00000231656 ANKLE2Q86XL3 938 aa31.2■■■□□ 2.58
CDX1-201ENST00000231656 METP08581 1390 aa31.19■■■□□ 2.58
CDX1-201ENST00000231656 STK26Q9P289 416 aa31.19■■■□□ 2.58
CDX1-201ENST00000231656 MED14O60244 1454 aa31.18■■■□□ 2.58
CDX1-201ENST00000231656 CENPJQ9HC77 1338 aaPredicted RBP31.16■■■□□ 2.58
CDX1-201ENST00000231656 LRPPRCP42704 1394 aaKnown RBP31.15■■■□□ 2.58
CDX1-201ENST00000231656 SLC26A8Q96RN1 970 aa31.14■■■□□ 2.58
CDX1-201ENST00000231656 QRICH2Q9H0J4 1663 aa31.14■■■□□ 2.58
CDX1-201ENST00000231656 DISP3Q9P2K9 1392 aa31.13■■■□□ 2.57
CDX1-201ENST00000231656 TMF1P82094 1093 aa31.13■■■□□ 2.57
CDX1-201ENST00000231656 PRKRIP1Q9H875 184 aaPredicted RBP31.13■■■□□ 2.57
CDX1-201ENST00000231656 DIP2AQ14689 1571 aa31.12■■■□□ 2.57
CDX1-201ENST00000231656 SBNO2Q9Y2G9 1366 aa31.11■■■□□ 2.57
CDX1-201ENST00000231656 TBX22Q9Y458 520 aa31.11■■■□□ 2.57
CDX1-201ENST00000231656 ABCC11Q96J66 1382 aa31.11■■■□□ 2.57
CDX1-201ENST00000231656 DLC1Q96QB1 1528 aa31.09■■■□□ 2.57
CDX1-201ENST00000231656 POLR3GLQ9BT43 218 aa31.09■■■□□ 2.57
CDX1-201ENST00000231656 KNDC1Q76NI1 1749 aa31.08■■■□□ 2.57
CDX1-201ENST00000231656 SLC24A1O60721 1099 aa31.07■■■□□ 2.56
CDX1-201ENST00000231656 PRAM1Q96QH2 718 aa31.05■■■□□ 2.56
CDX1-201ENST00000231656 TECPR2O15040 1411 aa31.04■■■□□ 2.56
CDX1-201ENST00000231656 LMTK3Q96Q04 1460 aa31.04■■■□□ 2.56
CDX1-201ENST00000231656 NPHP4O75161 1426 aaPredicted RBP31.03■■■□□ 2.56
CDX1-201ENST00000231656 POGKQ9P215 609 aa31.02■■■□□ 2.56
CDX1-201ENST00000231656 NCKAP5LQ9HCH0 1330 aa31.02■■■□□ 2.56
CDX1-201ENST00000231656 SAFB2Q14151 953 aaKnown RBP eCLIP31.02■■■□□ 2.56
CDX1-201ENST00000231656 PTPRUQ92729 1446 aa31.02■■■□□ 2.56
CDX1-201ENST00000231656 CPS1P31327 1500 aa31.01■■■□□ 2.56
CDX1-201ENST00000231656 CDCA8Q53HL2 280 aa31■■■□□ 2.55
CDX1-201ENST00000231656 HSPA2P54652 639 aa30.99■■■□□ 2.55
CDX1-201ENST00000231656 SIRT1Q96EB6 747 aa30.98■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms