RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 MYT1Q01538 1121 aa20.68■□□□□ 0.9
CCDC47-201ENST00000225726 CENPBP07199 599 aaPredicted RBP20.68■□□□□ 0.9
CCDC47-201ENST00000225726 CHGAP10645 457 aaKnown RBP20.68■□□□□ 0.9
CCDC47-201ENST00000225726 ERVK-7P63135 1459 aa20.67■□□□□ 0.9
CCDC47-201ENST00000225726 SLC52A1Q9NWF4 448 aa20.67■□□□□ 0.9
CCDC47-201ENST00000225726 CCER2I3L3R5 266 aa20.66■□□□□ 0.9
CCDC47-201ENST00000225726 YTHDC1Q96MU7 727 aaKnown RBP20.66■□□□□ 0.9
CCDC47-201ENST00000225726 ADGRF5Q8IZF2 1346 aa20.65■□□□□ 0.9
CCDC47-201ENST00000225726 SCAF11Q99590 1463 aaKnown RBP20.64■□□□□ 0.9
CCDC47-201ENST00000225726 NEXMIFQ5QGS0 1516 aa20.62■□□□□ 0.89
CCDC47-201ENST00000225726 SPATA31D1Q6ZQQ2 1576 aa20.62■□□□□ 0.89
CCDC47-201ENST00000225726 TMEM131LA2VDJ0 1609 aa20.62■□□□□ 0.89
CCDC47-201ENST00000225726 IDI1Q13907 227 aa20.61■□□□□ 0.89
CCDC47-201ENST00000225726 TRHP20396 242 aaPredicted RBP20.61■□□□□ 0.89
CCDC47-201ENST00000225726 SETBP1Q9Y6X0 1596 aa20.61■□□□□ 0.89
CCDC47-201ENST00000225726 PIK3C2GO75747 1445 aa20.61■□□□□ 0.89
CCDC47-201ENST00000225726 MLECQ14165 292 aa20.6■□□□□ 0.89
CCDC47-201ENST00000225726 TESK2Q96S53 571 aa20.6■□□□□ 0.89
CCDC47-201ENST00000225726 MYO5BQ9ULV0 1848 aa20.59■□□□□ 0.89
CCDC47-201ENST00000225726 POLR3GLQ9BT43 218 aa20.59■□□□□ 0.89
CCDC47-201ENST00000225726 EIF3AQ14152 1382 aaKnown RBP20.58■□□□□ 0.89
CCDC47-201ENST00000225726 FBXO31Q5XUX0 539 aaPredicted RBP20.58■□□□□ 0.89
CCDC47-201ENST00000225726 CFAP70Q5T0N1 1121 aa20.58■□□□□ 0.88
CCDC47-201ENST00000225726 DNAJC5Q9H3Z4 198 aa20.57■□□□□ 0.88
CCDC47-201ENST00000225726 ZFYVE9O95405 1425 aa20.56■□□□□ 0.88
CCDC47-201ENST00000225726 ESF1Q9H501 851 aaKnown RBP20.55■□□□□ 0.88
CCDC47-201ENST00000225726 DISP3Q9P2K9 1392 aa20.55■□□□□ 0.88
CCDC47-201ENST00000225726 VGFO15240 615 aaPredicted RBP20.54■□□□□ 0.88
CCDC47-201ENST00000225726 TMF1P82094 1093 aa20.54■□□□□ 0.88
CCDC47-201ENST00000225726 C14orf93Q9H972 538 aaKnown RBP20.53■□□□□ 0.88
CCDC47-201ENST00000225726 MYO3AQ8NEV4 1616 aa20.53■□□□□ 0.88
CCDC47-201ENST00000225726 ZMYM3Q14202 1370 aa20.53■□□□□ 0.88
CCDC47-201ENST00000225726 PRKRIP1Q9H875 184 aaPredicted RBP20.52■□□□□ 0.88
CCDC47-201ENST00000225726 ADGRB1O14514 1584 aa20.52■□□□□ 0.87
CCDC47-201ENST00000225726 SLC24A1O60721 1099 aa20.47■□□□□ 0.87
CCDC47-201ENST00000225726 A2ML1A8K2U0 1454 aa20.47■□□□□ 0.87
CCDC47-201ENST00000225726 CDCA8Q53HL2 280 aa20.46■□□□□ 0.87
CCDC47-201ENST00000225726 STAG3Q9UJ98 1225 aa20.46■□□□□ 0.87
CCDC47-201ENST00000225726 NUTM2DQ5VT03 806 aaPredicted RBP20.44■□□□□ 0.86
CCDC47-201ENST00000225726 SBNO2Q9Y2G9 1366 aa20.44■□□□□ 0.86
CCDC47-201ENST00000225726 TNRQ92752 1358 aa20.43■□□□□ 0.86
CCDC47-201ENST00000225726 KDM5AP29375 1690 aaKnown RBP20.43■□□□□ 0.86
CCDC47-201ENST00000225726 FER1L4A9Z1Z3 1794 aa20.41■□□□□ 0.86
CCDC47-201ENST00000225726 QRICH2Q9H0J4 1663 aa20.41■□□□□ 0.86
CCDC47-201ENST00000225726 KTN1Q86UP2 1357 aaKnown RBP20.4■□□□□ 0.86
CCDC47-201ENST00000225726 CENPJQ9HC77 1338 aaPredicted RBP20.4■□□□□ 0.86
CCDC47-201ENST00000225726 RIMS2Q9UQ26 1411 aa20.4■□□□□ 0.86
CCDC47-201ENST00000225726 ARHGEF28Q8N1W1 1705 aaKnown RBP20.4■□□□□ 0.86
CCDC47-201ENST00000225726 ASXL1Q8IXJ9 1541 aa20.39■□□□□ 0.86
CCDC47-201ENST00000225726 TMEM132EQ6IEE7 984 aa20.39■□□□□ 0.85
CCDC47-201ENST00000225726 MYOM1P52179 1685 aa20.39■□□□□ 0.85
CCDC47-201ENST00000225726 TRAK1Q9UPV9 953 aa20.38■□□□□ 0.85
CCDC47-201ENST00000225726 C3P01024 1663 aa20.37■□□□□ 0.85
CCDC47-201ENST00000225726 ALKQ9UM73 1620 aa20.37■□□□□ 0.85
CCDC47-201ENST00000225726 UBR1Q8IWV7 1749 aa20.36■□□□□ 0.85
CCDC47-201ENST00000225726 PER1O15534 1290 aaPredicted RBP20.36■□□□□ 0.85
CCDC47-201ENST00000225726 PANK3Q9H999 370 aa20.35■□□□□ 0.85
CCDC47-201ENST00000225726 NLRP1Q9C000 1473 aa20.35■□□□□ 0.85
CCDC47-201ENST00000225726 RALBP1Q15311 655 aa20.34■□□□□ 0.85
CCDC47-201ENST00000225726 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.34■□□□□ 0.85
CCDC47-201ENST00000225726 CCDC184Q52MB2 194 aa20.33■□□□□ 0.85
CCDC47-201ENST00000225726 MRS2Q9HD23 443 aa20.33■□□□□ 0.85
CCDC47-201ENST00000225726 SETD1AO15047 1707 aaKnown RBP20.32■□□□□ 0.84
CCDC47-201ENST00000225726 YTHDC2Q9H6S0 1430 aaKnown RBP20.3■□□□□ 0.84
CCDC47-201ENST00000225726 PARD3Q8TEW0 1356 aa20.3■□□□□ 0.84
CCDC47-201ENST00000225726 HDGFP51858 240 aaKnown RBP20.29■□□□□ 0.84
CCDC47-201ENST00000225726 GTF3C3Q9Y5Q9 886 aa20.29■□□□□ 0.84
CCDC47-201ENST00000225726 NRXN3Q9Y4C0 1643 aa20.29■□□□□ 0.84
CCDC47-201ENST00000225726 MYBBP1AQ9BQG0 1328 aaKnown RBP20.29■□□□□ 0.84
CCDC47-201ENST00000225726 CNGB1Q14028 1251 aaPredicted RBP20.28■□□□□ 0.84
CCDC47-201ENST00000225726 PTPRMP28827 1452 aa20.28■□□□□ 0.84
CCDC47-201ENST00000225726 TMEM2Q9UHN6 1383 aa20.27■□□□□ 0.84
CCDC47-201ENST00000225726 CEBPAP49715 358 aaPredicted RBP20.27■□□□□ 0.84
CCDC47-201ENST00000225726 DLC1Q96QB1 1528 aa20.26■□□□□ 0.83
CCDC47-201ENST00000225726 BRD4O60885 1362 aaPredicted RBP20.25■□□□□ 0.83
CCDC47-201ENST00000225726 PUS7Q96PZ0 661 aaKnown RBP20.25■□□□□ 0.83
CCDC47-201ENST00000225726 TULP4Q9NRJ4 1543 aa20.25■□□□□ 0.83
CCDC47-201ENST00000225726 SENP3Q9H4L4 574 aaPredicted RBP20.25■□□□□ 0.83
CCDC47-201ENST00000225726 STK26Q9P289 416 aa20.24■□□□□ 0.83
CCDC47-201ENST00000225726 KNSTRNQ9Y448 316 aa20.24■□□□□ 0.83
CCDC47-201ENST00000225726 EVC2Q86UK5 1308 aa20.23■□□□□ 0.83
CCDC47-201ENST00000225726 LRPPRCP42704 1394 aaKnown RBP20.23■□□□□ 0.83
CCDC47-201ENST00000225726 RIMS1Q86UR5 1692 aaKnown RBP20.22■□□□□ 0.83
CCDC47-201ENST00000225726 NPC1L1Q9UHC9 1359 aa20.21■□□□□ 0.83
CCDC47-201ENST00000225726 FAM9BQ8IZU0 186 aa20.21■□□□□ 0.83
CCDC47-201ENST00000225726 CC2D1BQ5T0F9 858 aaKnown RBP20.21■□□□□ 0.83
CCDC47-201ENST00000225726 ADAMTSL3P82987 1691 aa20.2■□□□□ 0.82
CCDC47-201ENST00000225726 SLIT1O75093 1534 aa20.2■□□□□ 0.82
CCDC47-201ENST00000225726 TMC1Q8TDI8 760 aa20.2■□□□□ 0.82
CCDC47-201ENST00000225726 KNDC1Q76NI1 1749 aa20.2■□□□□ 0.82
CCDC47-201ENST00000225726 NLRP13Q86W25 1043 aa20.19■□□□□ 0.82
CCDC47-201ENST00000225726 HNRNPUQ00839 825 aaKnown RBP eCLIP20.19■□□□□ 0.82
CCDC47-201ENST00000225726 AMER1Q5JTC6 1135 aaPredicted RBP20.19■□□□□ 0.82
CCDC47-201ENST00000225726 PRAM1Q96QH2 718 aa20.19■□□□□ 0.82
CCDC47-201ENST00000225726 ARHGAP23Q9P227 1491 aa20.19■□□□□ 0.82
CCDC47-201ENST00000225726 ABCC11Q96J66 1382 aa20.19■□□□□ 0.82
CCDC47-201ENST00000225726 POGKQ9P215 609 aa20.18■□□□□ 0.82
CCDC47-201ENST00000225726 PLEKHG1Q9ULL1 1385 aa20.18■□□□□ 0.82
CCDC47-201ENST00000225726 METP08581 1390 aa20.15■□□□□ 0.82
CCDC47-201ENST00000225726 SAFB2Q14151 953 aaKnown RBP eCLIP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms