RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 ESF1Q9H501 851 aaKnown RBP25.33■■□□□ 1.65
VIM-201ENST00000224237 RPGRIP1LQ68CZ1 1315 aa25.33■■□□□ 1.65
VIM-201ENST00000224237 NRXN1Q9ULB1 1477 aa25.33■■□□□ 1.65
VIM-201ENST00000224237 ZMYM3Q14202 1370 aa25.31■■□□□ 1.64
VIM-201ENST00000224237 KIF7Q2M1P5 1343 aa25.31■■□□□ 1.64
VIM-201ENST00000224237 SPATA31D1Q6ZQQ2 1576 aa25.31■■□□□ 1.64
VIM-201ENST00000224237 ST20-MTHFSA0A0A6YYL1 179 aa25.3■■□□□ 1.64
VIM-201ENST00000224237 ADGRF5Q8IZF2 1346 aa25.3■■□□□ 1.64
VIM-201ENST00000224237 MYO5BQ9ULV0 1848 aa25.28■■□□□ 1.64
VIM-201ENST00000224237 IQGAP1P46940 1657 aa25.27■■□□□ 1.64
VIM-201ENST00000224237 TMEM131LA2VDJ0 1609 aa25.26■■□□□ 1.63
VIM-201ENST00000224237 NEXMIFQ5QGS0 1516 aa25.25■■□□□ 1.63
VIM-201ENST00000224237 PIK3C2GO75747 1445 aa25.23■■□□□ 1.63
VIM-201ENST00000224237 SCAF11Q99590 1463 aaKnown RBP25.23■■□□□ 1.63
VIM-201ENST00000224237 ANP32CO43423 234 aa25.22■■□□□ 1.63
VIM-201ENST00000224237 NUTM2DQ5VT03 806 aaPredicted RBP25.22■■□□□ 1.63
VIM-201ENST00000224237 FER1L4A9Z1Z3 1794 aa25.21■■□□□ 1.63
VIM-201ENST00000224237 SETBP1Q9Y6X0 1596 aa25.2■■□□□ 1.62
VIM-201ENST00000224237 CFAP70Q5T0N1 1121 aa25.19■■□□□ 1.62
VIM-201ENST00000224237 VGFO15240 615 aaPredicted RBP25.19■■□□□ 1.62
VIM-201ENST00000224237 ZFYVE9O95405 1425 aa25.18■■□□□ 1.62
VIM-201ENST00000224237 EIF3AQ14152 1382 aaKnown RBP25.17■■□□□ 1.62
VIM-201ENST00000224237 CEBPAP49715 358 aaPredicted RBP25.17■■□□□ 1.62
VIM-201ENST00000224237 STAG3Q9UJ98 1225 aa25.15■■□□□ 1.62
VIM-201ENST00000224237 TESK2Q96S53 571 aa25.15■■□□□ 1.62
VIM-201ENST00000224237 TNRQ92752 1358 aa25.15■■□□□ 1.62
VIM-201ENST00000224237 C3P01024 1663 aa25.15■■□□□ 1.62
VIM-201ENST00000224237 A2ML1A8K2U0 1454 aa25.14■■□□□ 1.62
VIM-201ENST00000224237 C14orf93Q9H972 538 aaKnown RBP25.13■■□□□ 1.61
VIM-201ENST00000224237 PLPPR3Q6T4P5 718 aa25.13■■□□□ 1.61
VIM-201ENST00000224237 POLR3GLQ9BT43 218 aa25.12■■□□□ 1.61
VIM-201ENST00000224237 SENP3Q9H4L4 574 aaPredicted RBP25.12■■□□□ 1.61
VIM-201ENST00000224237 TMF1P82094 1093 aa25.1■■□□□ 1.61
VIM-201ENST00000224237 ADGRB1O14514 1584 aa25.1■■□□□ 1.61
VIM-201ENST00000224237 CCER2I3L3R5 266 aa25.09■■□□□ 1.61
VIM-201ENST00000224237 MYO3AQ8NEV4 1616 aa25.07■■□□□ 1.6
VIM-201ENST00000224237 DISP3Q9P2K9 1392 aa25.07■■□□□ 1.6
VIM-201ENST00000224237 KDM5AP29375 1690 aaKnown RBP25.07■■□□□ 1.6
VIM-201ENST00000224237 RIMS1Q86UR5 1692 aaKnown RBP25.05■■□□□ 1.6
VIM-201ENST00000224237 SLC24A1O60721 1099 aa25.04■■□□□ 1.6
VIM-201ENST00000224237 TMEM132EQ6IEE7 984 aa25.04■■□□□ 1.6
VIM-201ENST00000224237 RIMS2Q9UQ26 1411 aa25.04■■□□□ 1.6
VIM-201ENST00000224237 UBR1Q8IWV7 1749 aa25.02■■□□□ 1.6
VIM-201ENST00000224237 YTHDC1Q96MU7 727 aaKnown RBP25.02■■□□□ 1.6
VIM-201ENST00000224237 ADAMTSL3P82987 1691 aa25.01■■□□□ 1.59
VIM-201ENST00000224237 NLRP1Q9C000 1473 aa25■■□□□ 1.59
VIM-201ENST00000224237 CDCA8Q53HL2 280 aa25■■□□□ 1.59
VIM-201ENST00000224237 SBNO2Q9Y2G9 1366 aa24.99■■□□□ 1.59
VIM-201ENST00000224237 ASXL1Q8IXJ9 1541 aa24.99■■□□□ 1.59
VIM-201ENST00000224237 CENPBP07199 599 aaPredicted RBP24.98■■□□□ 1.59
VIM-201ENST00000224237 PRKRIP1Q9H875 184 aaPredicted RBP24.98■■□□□ 1.59
VIM-201ENST00000224237 TRAK1Q9UPV9 953 aa24.96■■□□□ 1.59
VIM-201ENST00000224237 CENPJQ9HC77 1338 aaPredicted RBP24.96■■□□□ 1.59
VIM-201ENST00000224237 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.96■■□□□ 1.59
VIM-201ENST00000224237 ARHGEF28Q8N1W1 1705 aaKnown RBP24.94■■□□□ 1.58
VIM-201ENST00000224237 ALKQ9UM73 1620 aa24.94■■□□□ 1.58
VIM-201ENST00000224237 QRICH2Q9H0J4 1663 aa24.93■■□□□ 1.58
VIM-201ENST00000224237 HDGFP51858 240 aaKnown RBP24.93■■□□□ 1.58
VIM-201ENST00000224237 TMEM2Q9UHN6 1383 aa24.93■■□□□ 1.58
VIM-201ENST00000224237 NRXN3Q9Y4C0 1643 aa24.9■■□□□ 1.58
VIM-201ENST00000224237 PTPRMP28827 1452 aa24.9■■□□□ 1.58
VIM-201ENST00000224237 SETD1AO15047 1707 aaKnown RBP24.88■■□□□ 1.57
VIM-201ENST00000224237 STK26Q9P289 416 aa24.87■■□□□ 1.57
VIM-201ENST00000224237 YTHDC2Q9H6S0 1430 aaKnown RBP24.87■■□□□ 1.57
VIM-201ENST00000224237 MYOM1P52179 1685 aa24.86■■□□□ 1.57
VIM-201ENST00000224237 KTN1Q86UP2 1357 aaKnown RBP24.85■■□□□ 1.57
VIM-201ENST00000224237 LTKP29376 864 aa24.84■■□□□ 1.57
VIM-201ENST00000224237 PER1O15534 1290 aaPredicted RBP24.83■■□□□ 1.56
VIM-201ENST00000224237 PANK3Q9H999 370 aa24.83■■□□□ 1.56
VIM-201ENST00000224237 CEP170BQ9Y4F5 1589 aaPredicted RBP24.83■■□□□ 1.56
VIM-201ENST00000224237 SLIT1O75093 1534 aa24.81■■□□□ 1.56
VIM-201ENST00000224237 ARHGAP23Q9P227 1491 aa24.81■■□□□ 1.56
VIM-201ENST00000224237 DLC1Q96QB1 1528 aa24.79■■□□□ 1.56
VIM-201ENST00000224237 TXNDC2Q86VQ3 553 aa24.79■■□□□ 1.56
VIM-201ENST00000224237 METP08581 1390 aa24.79■■□□□ 1.56
VIM-201ENST00000224237 CNGB1Q14028 1251 aaPredicted RBP24.79■■□□□ 1.56
VIM-201ENST00000224237 SAFB2Q14151 953 aaKnown RBP eCLIP24.79■■□□□ 1.56
VIM-201ENST00000224237 BCANQ96GW7 911 aa24.79■■□□□ 1.56
VIM-201ENST00000224237 RALBP1Q15311 655 aa24.78■■□□□ 1.56
VIM-201ENST00000224237 LRPPRCP42704 1394 aaKnown RBP24.77■■□□□ 1.56
VIM-201ENST00000224237 THEMISQ8N1K5 641 aaPredicted RBP24.77■■□□□ 1.56
VIM-201ENST00000224237 PLEKHG1Q9ULL1 1385 aa24.76■■□□□ 1.55
VIM-201ENST00000224237 EVC2Q86UK5 1308 aa24.76■■□□□ 1.55
VIM-201ENST00000224237 ADAMTS13Q76LX8 1427 aa24.76■■□□□ 1.55
VIM-201ENST00000224237 TULP4Q9NRJ4 1543 aa24.75■■□□□ 1.55
VIM-201ENST00000224237 PUS7Q96PZ0 661 aaKnown RBP24.75■■□□□ 1.55
VIM-201ENST00000224237 ZNF142P52746 1687 aaPredicted RBP24.75■■□□□ 1.55
VIM-201ENST00000224237 PRAM1Q96QH2 718 aa24.75■■□□□ 1.55
VIM-201ENST00000224237 EID1Q9Y6B2 187 aa24.75■■□□□ 1.55
VIM-201ENST00000224237 MRS2Q9HD23 443 aa24.74■■□□□ 1.55
VIM-201ENST00000224237 PARD3Q8TEW0 1356 aa24.74■■□□□ 1.55
VIM-201ENST00000224237 ABCC11Q96J66 1382 aa24.74■■□□□ 1.55
VIM-201ENST00000224237 KNDC1Q76NI1 1749 aa24.72■■□□□ 1.55
VIM-201ENST00000224237 POGKQ9P215 609 aa24.72■■□□□ 1.55
VIM-201ENST00000224237 MYBBP1AQ9BQG0 1328 aaKnown RBP24.71■■□□□ 1.55
VIM-201ENST00000224237 CCDC184Q52MB2 194 aa24.71■■□□□ 1.55
VIM-201ENST00000224237 KNSTRNQ9Y448 316 aa24.71■■□□□ 1.55
VIM-201ENST00000224237 SETD1BQ9UPS6 1966 aaKnown RBP24.71■■□□□ 1.55
VIM-201ENST00000224237 SLC26A8Q96RN1 970 aa24.69■■□□□ 1.54
VIM-201ENST00000224237 PLEKHH1Q9ULM0 1364 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms