RNA–Protein interactions for RNA: ENST00000221973.7

LIM2-201, Transcript of lens intrinsic membrane protein 2, humanhuman

TSL 1 (best) BASIC

Gene LIM2, Length 983 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2-201ENST00000221973 STAG3Q9UJ98 1225 aa24.34■■□□□ 1.49
LIM2-201ENST00000221973 NUP155O75694 1391 aa24.33■■□□□ 1.49
LIM2-201ENST00000221973 HRCP23327 699 aa24.32■■□□□ 1.48
LIM2-201ENST00000221973 UNC13BO14795 1591 aa24.31■■□□□ 1.48
LIM2-201ENST00000221973 SLC52A1Q9NWF4 448 aa24.31■■□□□ 1.48
LIM2-201ENST00000221973 MED1Q15648 1581 aaPredicted RBP24.3■■□□□ 1.48
LIM2-201ENST00000221973 ACIN1Q9UKV3 1341 aaKnown RBP24.28■■□□□ 1.48
LIM2-201ENST00000221973 ZFYVE9O95405 1425 aa24.27■■□□□ 1.48
LIM2-201ENST00000221973 SLC26A8Q96RN1 970 aa24.26■■□□□ 1.47
LIM2-201ENST00000221973 MYO5BQ9ULV0 1848 aa24.26■■□□□ 1.47
LIM2-201ENST00000221973 TMEM131LA2VDJ0 1609 aa24.24■■□□□ 1.47
LIM2-201ENST00000221973 KCNA6P17658 529 aa24.24■■□□□ 1.47
LIM2-201ENST00000221973 E9PCH4 1651 aa24.24■■□□□ 1.47
LIM2-201ENST00000221973 TMEM94Q12767 1356 aa24.22■■□□□ 1.47
LIM2-201ENST00000221973 SLC4A1APQ9BWU0 796 aaKnown RBP24.22■■□□□ 1.47
LIM2-201ENST00000221973 MPHOSPH9Q99550 1183 aa24.21■■□□□ 1.47
LIM2-201ENST00000221973 IQGAP3Q86VI3 1631 aa24.21■■□□□ 1.47
LIM2-201ENST00000221973 NWD1Q149M9 1564 aa24.2■■□□□ 1.47
LIM2-201ENST00000221973 SENP3Q9H4L4 574 aaPredicted RBP24.19■■□□□ 1.46
LIM2-201ENST00000221973 RIMS2Q9UQ26 1411 aa24.18■■□□□ 1.46
LIM2-201ENST00000221973 PLEKHG1Q9ULL1 1385 aa24.17■■□□□ 1.46
LIM2-201ENST00000221973 RBM33Q96EV2 1170 aaKnown RBP24.17■■□□□ 1.46
LIM2-201ENST00000221973 NKTRP30414 1462 aaKnown RBP24.16■■□□□ 1.46
LIM2-201ENST00000221973 PROSER2Q86WR7 435 aaPredicted RBP24.15■■□□□ 1.46
LIM2-201ENST00000221973 FAM135BQ49AJ0 1406 aa24.15■■□□□ 1.46
LIM2-201ENST00000221973 CHD2O14647 1828 aaKnown RBP24.13■■□□□ 1.45
LIM2-201ENST00000221973 FOXD1Q16676 465 aa24.12■■□□□ 1.45
LIM2-201ENST00000221973 BCANQ96GW7 911 aa24.1■■□□□ 1.45
LIM2-201ENST00000221973 ADAMTS13Q76LX8 1427 aa24.1■■□□□ 1.45
LIM2-201ENST00000221973 DHX57Q6P158 1386 aaKnown RBP24.09■■□□□ 1.45
LIM2-201ENST00000221973 TBX22Q9Y458 520 aa24.09■■□□□ 1.45
LIM2-201ENST00000221973 CHGAP10645 457 aaKnown RBP24.08■■□□□ 1.45
LIM2-201ENST00000221973 PPP1R15AO75807 674 aaPredicted RBP24.07■■□□□ 1.44
LIM2-201ENST00000221973 HDGFP51858 240 aaKnown RBP24.07■■□□□ 1.44
LIM2-201ENST00000221973 NUTM2DQ5VT03 806 aaPredicted RBP24.07■■□□□ 1.44
LIM2-201ENST00000221973 ROBO1Q9Y6N7 1651 aa24.07■■□□□ 1.44
LIM2-201ENST00000221973 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.06■■□□□ 1.44
LIM2-201ENST00000221973 MSH6P52701 1360 aa24.03■■□□□ 1.44
LIM2-201ENST00000221973 PHF23Q9BUL5 403 aaPredicted RBP24.02■■□□□ 1.44
LIM2-201ENST00000221973 RGS17Q9UGC6 210 aaPredicted RBP24.02■■□□□ 1.44
LIM2-201ENST00000221973 DIP2AQ14689 1571 aa24.01■■□□□ 1.43
LIM2-201ENST00000221973 SLAIN2Q9P270 581 aa24■■□□□ 1.43
LIM2-201ENST00000221973 SPHKAPQ2M3C7 1700 aa24■■□□□ 1.43
LIM2-201ENST00000221973 PIK3R4Q99570 1358 aa23.99■■□□□ 1.43
LIM2-201ENST00000221973 NCOA3Q9Y6Q9 1424 aa23.99■■□□□ 1.43
LIM2-201ENST00000221973 PTPRUQ92729 1446 aa23.98■■□□□ 1.43
LIM2-201ENST00000221973 CCER1Q8TC90 406 aaPredicted RBP23.97■■□□□ 1.43
LIM2-201ENST00000221973 NRXN3Q9Y4C0 1643 aa23.97■■□□□ 1.43
LIM2-201ENST00000221973 ANKRD30BQ9BXX2 1392 aa23.95■■□□□ 1.42
LIM2-201ENST00000221973 TRPM2O94759 1503 aa23.94■■□□□ 1.42
LIM2-201ENST00000221973 SETBP1Q9Y6X0 1596 aa23.93■■□□□ 1.42
LIM2-201ENST00000221973 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.92■■□□□ 1.42
LIM2-201ENST00000221973 CLTCL1P53675 1640 aa23.92■■□□□ 1.42
LIM2-201ENST00000221973 AMOTL2Q9Y2J4 779 aa23.91■■□□□ 1.42
LIM2-201ENST00000221973 PHLPP1O60346 1717 aa23.9■■□□□ 1.42
LIM2-201ENST00000221973 C19orf44Q9H6X5 657 aa23.89■■□□□ 1.41
LIM2-201ENST00000221973 XRN1Q8IZH2 1706 aaKnown RBP23.89■■□□□ 1.41
LIM2-201ENST00000221973 COL16A1Q07092 1604 aaPredicted RBP23.88■■□□□ 1.41
LIM2-201ENST00000221973 CCDC144AA2RUR9 1427 aa23.88■■□□□ 1.41
LIM2-201ENST00000221973 NEXMIFQ5QGS0 1516 aa23.87■■□□□ 1.41
LIM2-201ENST00000221973 METP08581 1390 aa23.87■■□□□ 1.41
LIM2-201ENST00000221973 SIN3AQ96ST3 1273 aa23.86■■□□□ 1.41
LIM2-201ENST00000221973 ZNF326Q5BKZ1 582 aaKnown RBP23.85■■□□□ 1.41
LIM2-201ENST00000221973 CADPS2Q86UW7 1296 aa23.85■■□□□ 1.41
LIM2-201ENST00000221973 NEUROD1Q13562 356 aa23.84■■□□□ 1.41
LIM2-201ENST00000221973 POTEAQ6S8J7 498 aa23.84■■□□□ 1.41
LIM2-201ENST00000221973 C14orf37Q86TY3 774 aa23.84■■□□□ 1.41
LIM2-201ENST00000221973 JCADQ9P266 1359 aa23.83■■□□□ 1.41
LIM2-201ENST00000221973 AHDC1Q5TGY3 1603 aaPredicted RBP23.82■■□□□ 1.4
LIM2-201ENST00000221973 ATF3P18847 181 aa23.81■■□□□ 1.4
LIM2-201ENST00000221973 CLSPNQ9HAW4 1339 aa23.81■■□□□ 1.4
LIM2-201ENST00000221973 KIF1BO60333 1816 aa23.8■■□□□ 1.4
LIM2-201ENST00000221973 DCCP43146 1447 aa23.79■■□□□ 1.4
LIM2-201ENST00000221973 BRINP3Q76B58 766 aa23.78■■□□□ 1.4
LIM2-201ENST00000221973 LRP6O75581 1613 aa23.77■■□□□ 1.4
LIM2-201ENST00000221973 RGL3Q3MIN7 710 aa23.76■■□□□ 1.39
LIM2-201ENST00000221973 MST1RQ04912 1400 aa23.76■■□□□ 1.39
LIM2-201ENST00000221973 SETD1AO15047 1707 aaKnown RBP23.75■■□□□ 1.39
LIM2-201ENST00000221973 SHPRHQ149N8 1683 aa23.73■■□□□ 1.39
LIM2-201ENST00000221973 SPATA31E1Q6ZUB1 1445 aa23.72■■□□□ 1.39
LIM2-201ENST00000221973 ADGRL3Q9HAR2 1447 aa23.72■■□□□ 1.39
LIM2-201ENST00000221973 ASXL1Q8IXJ9 1541 aa23.72■■□□□ 1.39
LIM2-201ENST00000221973 NALCNQ8IZF0 1738 aa23.71■■□□□ 1.39
LIM2-201ENST00000221973 SPATA31A6Q5VVP1 1343 aa23.71■■□□□ 1.39
LIM2-201ENST00000221973 VGFO15240 615 aaPredicted RBP23.69■■□□□ 1.38
LIM2-201ENST00000221973 NHSL1Q5SYE7 1610 aa23.68■■□□□ 1.38
LIM2-201ENST00000221973 PPLO60437 1756 aa23.68■■□□□ 1.38
LIM2-201ENST00000221973 RPGRIP1LQ68CZ1 1315 aa23.67■■□□□ 1.38
LIM2-201ENST00000221973 PTCH1Q13635 1447 aa23.67■■□□□ 1.38
LIM2-201ENST00000221973 PRAG1Q86YV5 1406 aa23.67■■□□□ 1.38
LIM2-201ENST00000221973 ROBO2Q9HCK4 1378 aa23.66■■□□□ 1.38
LIM2-201ENST00000221973 TONSLQ96HA7 1378 aa23.65■■□□□ 1.38
LIM2-201ENST00000221973 L3MBTL2Q969R5 705 aa23.64■■□□□ 1.37
LIM2-201ENST00000221973 DDX17Q92841 729 aaKnown RBP23.63■■□□□ 1.37
LIM2-201ENST00000221973 DCAF11Q8TEB1 546 aa23.62■■□□□ 1.37
LIM2-201ENST00000221973 KDM2AQ9Y2K7 1162 aa23.62■■□□□ 1.37
LIM2-201ENST00000221973 C1orf167Q5SNV9 1468 aa23.61■■□□□ 1.37
LIM2-201ENST00000221973 ADGRF5Q8IZF2 1346 aa23.59■■□□□ 1.37
LIM2-201ENST00000221973 LAMC1P11047 1609 aa23.58■■□□□ 1.36
LIM2-201ENST00000221973 MEX3CQ5U5Q3 659 aaKnown RBP23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms