RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 TMC1Q8TDI8 760 aa30.01■■■□□ 2.39
CCDC9-201ENST00000221922 MROH2AA6NES4 1674 aa30.01■■■□□ 2.39
CCDC9-201ENST00000221922 SCAF11Q99590 1463 aaKnown RBP30■■■□□ 2.39
CCDC9-201ENST00000221922 CNGB1Q14028 1251 aaPredicted RBP30■■■□□ 2.39
CCDC9-201ENST00000221922 NPATQ14207 1427 aa30■■■□□ 2.39
CCDC9-201ENST00000221922 ADGRB3O60242 1522 aa30■■■□□ 2.39
CCDC9-201ENST00000221922 RAPGEF3O95398 923 aa29.99■■■□□ 2.39
CCDC9-201ENST00000221922 TMF1P82094 1093 aa29.98■■■□□ 2.39
CCDC9-201ENST00000221922 PNISRQ8TF01 805 aaKnown RBP29.98■■■□□ 2.39
CCDC9-201ENST00000221922 CAMSAP1Q5T5Y3 1602 aa29.97■■■□□ 2.39
CCDC9-201ENST00000221922 DIP2BQ9P265 1576 aa29.95■■■□□ 2.39
CCDC9-201ENST00000221922 FANCIQ9NVI1 1328 aa29.95■■■□□ 2.39
CCDC9-201ENST00000221922 WASHC2CQ9Y4E1 1318 aa29.95■■■□□ 2.38
CCDC9-201ENST00000221922 NRXN1Q9ULB1 1477 aa29.95■■■□□ 2.38
CCDC9-201ENST00000221922 ZC3H13Q5T200 1668 aaKnown RBP29.93■■■□□ 2.38
CCDC9-201ENST00000221922 GGT6Q6P531 493 aa29.93■■■□□ 2.38
CCDC9-201ENST00000221922 PARD3Q8TEW0 1356 aa29.93■■■□□ 2.38
CCDC9-201ENST00000221922 ZMYM4Q5VZL5 1548 aa29.91■■■□□ 2.38
CCDC9-201ENST00000221922 LRPPRCP42704 1394 aaKnown RBP29.91■■■□□ 2.38
CCDC9-201ENST00000221922 EIF3AQ14152 1382 aaKnown RBP29.9■■■□□ 2.38
CCDC9-201ENST00000221922 PER1O15534 1290 aaPredicted RBP29.89■■■□□ 2.37
CCDC9-201ENST00000221922 RNF123Q5XPI4 1314 aa29.88■■■□□ 2.37
CCDC9-201ENST00000221922 NUDCQ9Y266 331 aa29.88■■■□□ 2.37
CCDC9-201ENST00000221922 NLRP13Q86W25 1043 aa29.87■■■□□ 2.37
CCDC9-201ENST00000221922 NOS1P29475 1434 aa29.87■■■□□ 2.37
CCDC9-201ENST00000221922 PPLO60437 1756 aa29.87■■■□□ 2.37
CCDC9-201ENST00000221922 YEATS2Q9ULM3 1422 aa29.86■■■□□ 2.37
CCDC9-201ENST00000221922 SIGLEC1Q9BZZ2 1709 aa29.86■■■□□ 2.37
CCDC9-201ENST00000221922 ARHGAP31Q2M1Z3 1444 aa29.85■■■□□ 2.37
CCDC9-201ENST00000221922 PIK3C2BO00750 1634 aa29.85■■■□□ 2.37
CCDC9-201ENST00000221922 MSH5O43196 834 aa29.84■■■□□ 2.37
CCDC9-201ENST00000221922 ADGRF5Q8IZF2 1346 aa29.84■■■□□ 2.37
CCDC9-201ENST00000221922 B4GALNT3Q6L9W6 998 aa29.84■■■□□ 2.37
CCDC9-201ENST00000221922 CFAP65Q6ZU64 1925 aaKnown RBP29.84■■■□□ 2.37
CCDC9-201ENST00000221922 SETBP1Q9Y6X0 1596 aa29.83■■■□□ 2.37
CCDC9-201ENST00000221922 SYNMO15061 1565 aa29.82■■■□□ 2.36
CCDC9-201ENST00000221922 CDCA8Q53HL2 280 aa29.81■■■□□ 2.36
CCDC9-201ENST00000221922 FAM69CQ0P6D2 419 aa29.81■■■□□ 2.36
CCDC9-201ENST00000221922 MYO3AQ8NEV4 1616 aa29.79■■■□□ 2.36
CCDC9-201ENST00000221922 PANK3Q9H999 370 aa29.79■■■□□ 2.36
CCDC9-201ENST00000221922 CFAP70Q5T0N1 1121 aa29.78■■■□□ 2.36
CCDC9-201ENST00000221922 RPGRIP1LQ68CZ1 1315 aa29.78■■■□□ 2.36
CCDC9-201ENST00000221922 SLC24A1O60721 1099 aa29.76■■■□□ 2.36
CCDC9-201ENST00000221922 PIK3C2GO75747 1445 aa29.76■■■□□ 2.35
CCDC9-201ENST00000221922 KDM5AP29375 1690 aaKnown RBP29.75■■■□□ 2.35
CCDC9-201ENST00000221922 MYOM1P52179 1685 aa29.75■■■□□ 2.35
CCDC9-201ENST00000221922 REREQ9P2R6 1566 aa29.74■■■□□ 2.35
CCDC9-201ENST00000221922 TSPOAP1O95153 1857 aa29.73■■■□□ 2.35
CCDC9-201ENST00000221922 INSRP06213 1382 aa29.72■■■□□ 2.35
CCDC9-201ENST00000221922 CHGAP10645 457 aaKnown RBP29.72■■■□□ 2.35
CCDC9-201ENST00000221922 SBNO2Q9Y2G9 1366 aa29.7■■■□□ 2.35
CCDC9-201ENST00000221922 CC2D1BQ5T0F9 858 aaKnown RBP29.68■■■□□ 2.34
CCDC9-201ENST00000221922 PREX1Q8TCU6 1659 aa29.68■■■□□ 2.34
CCDC9-201ENST00000221922 ADGRB1O14514 1584 aa29.68■■■□□ 2.34
CCDC9-201ENST00000221922 ERVK-7P63135 1459 aa29.67■■■□□ 2.34
CCDC9-201ENST00000221922 NEXMIFQ5QGS0 1516 aa29.67■■■□□ 2.34
CCDC9-201ENST00000221922 C14orf93Q9H972 538 aaKnown RBP29.66■■■□□ 2.34
CCDC9-201ENST00000221922 AGLP35573 1532 aa29.66■■■□□ 2.34
CCDC9-201ENST00000221922 KNSTRNQ9Y448 316 aa29.63■■■□□ 2.33
CCDC9-201ENST00000221922 DNAJC5Q9H3Z4 198 aa29.62■■■□□ 2.33
CCDC9-201ENST00000221922 SLC52A1Q9NWF4 448 aa29.62■■■□□ 2.33
CCDC9-201ENST00000221922 ASXL1Q8IXJ9 1541 aa29.61■■■□□ 2.33
CCDC9-201ENST00000221922 PDE3BQ13370 1112 aa29.6■■■□□ 2.33
CCDC9-201ENST00000221922 KIF13AQ9H1H9 1805 aa29.59■■■□□ 2.33
CCDC9-201ENST00000221922 NPC1L1Q9UHC9 1359 aa29.59■■■□□ 2.33
CCDC9-201ENST00000221922 BLMP54132 1417 aaPredicted RBP29.59■■■□□ 2.33
CCDC9-201ENST00000221922 ZFYVE9O95405 1425 aa29.58■■■□□ 2.33
CCDC9-201ENST00000221922 QRICH2Q9H0J4 1663 aa29.57■■■□□ 2.32
CCDC9-201ENST00000221922 CENPJQ9HC77 1338 aaPredicted RBP29.57■■■□□ 2.32
CCDC9-201ENST00000221922 TMEM131LA2VDJ0 1609 aa29.57■■■□□ 2.32
CCDC9-201ENST00000221922 VGFO15240 615 aaPredicted RBP29.57■■■□□ 2.32
CCDC9-201ENST00000221922 AMER1Q5JTC6 1135 aaPredicted RBP29.57■■■□□ 2.32
CCDC9-201ENST00000221922 CCDC136Q96JN2 1154 aa29.56■■■□□ 2.32
CCDC9-201ENST00000221922 IDI1Q13907 227 aa29.56■■■□□ 2.32
CCDC9-201ENST00000221922 PPP6R1Q9UPN7 881 aa29.56■■■□□ 2.32
CCDC9-201ENST00000221922 MYO5BQ9ULV0 1848 aa29.53■■■□□ 2.32
CCDC9-201ENST00000221922 SENP3-EIF4A1A0A087X0R7 540 aa29.52■■■□□ 2.32
CCDC9-201ENST00000221922 ARHGEF40Q8TER5 1519 aa29.51■■■□□ 2.31
CCDC9-201ENST00000221922 ARHGEF28Q8N1W1 1705 aaKnown RBP29.49■■■□□ 2.31
CCDC9-201ENST00000221922 ERICH6Q7L0X2 663 aa29.49■■■□□ 2.31
CCDC9-201ENST00000221922 PPP2R1AP30153 589 aa29.48■■■□□ 2.31
CCDC9-201ENST00000221922 TRAK1Q9UPV9 953 aa29.48■■■□□ 2.31
CCDC9-201ENST00000221922 CLTCQ00610 1675 aaKnown RBP29.47■■■□□ 2.31
CCDC9-201ENST00000221922 RRP1P56182 461 aaKnown RBP29.46■■■□□ 2.31
CCDC9-201ENST00000221922 TMEM132EQ6IEE7 984 aa29.44■■■□□ 2.3
CCDC9-201ENST00000221922 RCAN3Q9UKA8 241 aa29.42■■■□□ 2.3
CCDC9-201ENST00000221922 SPATA31D1Q6ZQQ2 1576 aa29.42■■■□□ 2.3
CCDC9-201ENST00000221922 SALL2Q9Y467 1007 aaPredicted RBP29.4■■■□□ 2.3
CCDC9-201ENST00000221922 WDR43Q15061 677 aaKnown RBP eCLIP29.39■■■□□ 2.3
CCDC9-201ENST00000221922 NUTM2DQ5VT03 806 aaPredicted RBP29.39■■■□□ 2.3
CCDC9-201ENST00000221922 FBXO31Q5XUX0 539 aaPredicted RBP29.39■■■□□ 2.3
CCDC9-201ENST00000221922 PUS7Q96PZ0 661 aaKnown RBP29.38■■■□□ 2.29
CCDC9-201ENST00000221922 CARD14Q9BXL6 1004 aa29.36■■■□□ 2.29
CCDC9-201ENST00000221922 ADAMTS8Q9UP79 889 aa29.35■■■□□ 2.29
CCDC9-201ENST00000221922 TULP4Q9NRJ4 1543 aa29.34■■■□□ 2.29
CCDC9-201ENST00000221922 USP32Q8NFA0 1604 aa29.34■■■□□ 2.29
CCDC9-201ENST00000221922 EXOC6Q8TAG9 804 aa29.3■■■□□ 2.28
CCDC9-201ENST00000221922 EVC2Q86UK5 1308 aa29.3■■■□□ 2.28
CCDC9-201ENST00000221922 CDCA7LQ96GN5 454 aa29.29■■■□□ 2.28
CCDC9-201ENST00000221922 A2ML1A8K2U0 1454 aa29.28■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms