RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 FGD6Q6ZV73 1430 aa18.49■□□□□ 0.55
PTPRA-201ENST00000216877 KDM5BQ9UGL1 1544 aa18.49■□□□□ 0.55
PTPRA-201ENST00000216877 NAIPQ13075 1403 aa18.49■□□□□ 0.55
PTPRA-201ENST00000216877 CBX1P83916 185 aa18.49■□□□□ 0.55
PTPRA-201ENST00000216877 ANTXR1Q9H6X2 564 aa18.49■□□□□ 0.55
PTPRA-201ENST00000216877 SENP3Q9H4L4 574 aaPredicted RBP18.49■□□□□ 0.55
PTPRA-201ENST00000216877 BRD4O60885 1362 aaPredicted RBP18.48■□□□□ 0.55
PTPRA-201ENST00000216877 BCAR3O75815 825 aa18.48■□□□□ 0.55
PTPRA-201ENST00000216877 HFM1A2PYH4 1435 aa18.48■□□□□ 0.55
PTPRA-201ENST00000216877 HSP90AB1P08238 724 aaKnown RBP18.48■□□□□ 0.55
PTPRA-201ENST00000216877 USP19O94966 1318 aa18.48■□□□□ 0.55
PTPRA-201ENST00000216877 CENPJQ9HC77 1338 aaPredicted RBP18.48■□□□□ 0.55
PTPRA-201ENST00000216877 IGSF3O75054 1194 aa18.47■□□□□ 0.55
PTPRA-201ENST00000216877 OFD1O75665 1012 aa18.47■□□□□ 0.55
PTPRA-201ENST00000216877 PTMAP06454 111 aaKnown RBP18.46■□□□□ 0.55
PTPRA-201ENST00000216877 CCDC146Q8IYE0 955 aa18.46■□□□□ 0.55
PTPRA-201ENST00000216877 SMAP1Q8IYB5 467 aaPredicted RBP18.45■□□□□ 0.54
PTPRA-201ENST00000216877 PANK1Q8TE04 598 aa18.45■□□□□ 0.54
PTPRA-201ENST00000216877 GOLGA2Q08379 1002 aa18.45■□□□□ 0.54
PTPRA-201ENST00000216877 MPNDQ8N594 471 aa18.45■□□□□ 0.54
PTPRA-201ENST00000216877 DNMT1P26358 1616 aaKnown RBP18.44■□□□□ 0.54
PTPRA-201ENST00000216877 GBP4Q96PP9 640 aa18.44■□□□□ 0.54
PTPRA-201ENST00000216877 ADAMTS8Q9UP79 889 aa18.44■□□□□ 0.54
PTPRA-201ENST00000216877 DDX49Q9Y6V7 483 aaKnown RBP18.44■□□□□ 0.54
PTPRA-201ENST00000216877 ABCC10Q5T3U5 1492 aa18.44■□□□□ 0.54
PTPRA-201ENST00000216877 CCDC173Q0VFZ6 552 aa18.43■□□□□ 0.54
PTPRA-201ENST00000216877 CLUAP1Q96AJ1 413 aa18.42■□□□□ 0.54
PTPRA-201ENST00000216877 MAPK8IP3Q9UPT6 1336 aa18.42■□□□□ 0.54
PTPRA-201ENST00000216877 GOLGA6L22H0YM25 854 aa18.42■□□□□ 0.54
PTPRA-201ENST00000216877 C22orf23Q9BZE7 217 aa18.41■□□□□ 0.54
PTPRA-201ENST00000216877 ADGBQ8N7X0 1667 aa18.41■□□□□ 0.54
PTPRA-201ENST00000216877 NEUROD2Q15784 382 aa18.41■□□□□ 0.54
PTPRA-201ENST00000216877 TSC1Q92574 1164 aa18.4■□□□□ 0.54
PTPRA-201ENST00000216877 PAXIP1Q6ZW49 1069 aaPredicted RBP18.39■□□□□ 0.54
PTPRA-201ENST00000216877 TBC1D32Q96NH3 1257 aa18.39■□□□□ 0.53
PTPRA-201ENST00000216877 LRPPRCP42704 1394 aaKnown RBP18.39■□□□□ 0.53
PTPRA-201ENST00000216877 ITSN2Q9NZM3 1697 aa18.38■□□□□ 0.53
PTPRA-201ENST00000216877 FAM177BA6PVY3 158 aa18.38■□□□□ 0.53
PTPRA-201ENST00000216877 GTF2E1P29083 439 aaPredicted RBP18.38■□□□□ 0.53
PTPRA-201ENST00000216877 PPP4R3BQ5MIZ7 849 aa18.38■□□□□ 0.53
PTPRA-201ENST00000216877 PREX2Q70Z35 1606 aa18.37■□□□□ 0.53
PTPRA-201ENST00000216877 PLEKHD1A6NEE1 506 aa18.37■□□□□ 0.53
PTPRA-201ENST00000216877 TPRNQ4KMQ1 711 aa18.37■□□□□ 0.53
PTPRA-201ENST00000216877 TNPO1Q92973 898 aaKnown RBP18.37■□□□□ 0.53
PTPRA-201ENST00000216877 BCL2L13Q9BXK5 485 aa18.37■□□□□ 0.53
PTPRA-201ENST00000216877 PLB1Q6P1J6 1458 aa18.37■□□□□ 0.53
PTPRA-201ENST00000216877 CFDP1Q9UEE9 299 aaPredicted RBP18.36■□□□□ 0.53
PTPRA-201ENST00000216877 SPDYE4A6NLX3 237 aa18.35■□□□□ 0.53
PTPRA-201ENST00000216877 JARID2Q92833 1246 aaPredicted RBP18.35■□□□□ 0.53
PTPRA-201ENST00000216877 STAC3Q96MF2 364 aa18.35■□□□□ 0.53
PTPRA-201ENST00000216877 CGNQ9P2M7 1197 aaKnown RBP18.35■□□□□ 0.53
PTPRA-201ENST00000216877 MTERF4Q7Z6M4 381 aaKnown RBP18.35■□□□□ 0.53
PTPRA-201ENST00000216877 DUSP27Q5VZP5 1158 aa18.34■□□□□ 0.53
PTPRA-201ENST00000216877 PDZRN3Q9UPQ7 1066 aa18.34■□□□□ 0.53
PTPRA-201ENST00000216877 ZCCHC11Q5TAX3 1644 aaKnown RBP18.34■□□□□ 0.53
PTPRA-201ENST00000216877 ISY1Q9ULR0 285 aaKnown RBP18.34■□□□□ 0.53
PTPRA-201ENST00000216877 ROCK2O75116 1388 aaKnown RBP18.33■□□□□ 0.53
PTPRA-201ENST00000216877 RGL3Q3MIN7 710 aa18.33■□□□□ 0.52
PTPRA-201ENST00000216877 PLPPR3Q6T4P5 718 aa18.33■□□□□ 0.52
PTPRA-201ENST00000216877 ZNF771Q7L3S4 317 aaPredicted RBP18.32■□□□□ 0.52
PTPRA-201ENST00000216877 CAVIN1Q6NZI2 390 aaKnown RBP18.32■□□□□ 0.52
PTPRA-201ENST00000216877 TSPY4P0CV99 314 aa18.32■□□□□ 0.52
PTPRA-201ENST00000216877 TSPY10P0CW01 314 aa18.32■□□□□ 0.52
PTPRA-201ENST00000216877 RNF214Q8ND24 703 aa18.32■□□□□ 0.52
PTPRA-201ENST00000216877 SKOR2Q2VWA4 1001 aaPredicted RBP18.31■□□□□ 0.52
PTPRA-201ENST00000216877 ZBTB22O15209 634 aa18.3■□□□□ 0.52
PTPRA-201ENST00000216877 DMTNQ08495 405 aa18.3■□□□□ 0.52
PTPRA-201ENST00000216877 PANK3Q9H999 370 aa18.3■□□□□ 0.52
PTPRA-201ENST00000216877 TTC37Q6PGP7 1564 aa18.3■□□□□ 0.52
PTPRA-201ENST00000216877 PKD2Q13563 968 aa18.3■□□□□ 0.52
PTPRA-201ENST00000216877 MYOM3Q5VTT5 1437 aa18.3■□□□□ 0.52
PTPRA-201ENST00000216877 E9PSI1 815 aa18.3■□□□□ 0.52
PTPRA-201ENST00000216877 DYNC1I1O14576 645 aa18.3■□□□□ 0.52
PTPRA-201ENST00000216877 APAF1O14727 1248 aa18.3■□□□□ 0.52
PTPRA-201ENST00000216877 CHMP4AQ9BY43 222 aa18.3■□□□□ 0.52
PTPRA-201ENST00000216877 CCDC94Q9BW85 323 aaPredicted RBP18.29■□□□□ 0.52
PTPRA-201ENST00000216877 SPATA31E1Q6ZUB1 1445 aa18.28■□□□□ 0.52
PTPRA-201ENST00000216877 ABCC2Q92887 1545 aa18.28■□□□□ 0.52
PTPRA-201ENST00000216877 ATP10BO94823 1461 aa18.28■□□□□ 0.52
PTPRA-201ENST00000216877 CHGAP10645 457 aaKnown RBP18.26■□□□□ 0.51
PTPRA-201ENST00000216877 PLCB2Q00722 1185 aa18.26■□□□□ 0.51
PTPRA-201ENST00000216877 CSPP1Q1MSJ5 1256 aa18.26■□□□□ 0.51
PTPRA-201ENST00000216877 MCTP1Q6DN14 999 aa18.26■□□□□ 0.51
PTPRA-201ENST00000216877 UHRF1BP1LA0JNW5 1464 aa18.26■□□□□ 0.51
PTPRA-201ENST00000216877 FOXD4L5Q5VV16 416 aaPredicted RBP18.26■□□□□ 0.51
PTPRA-201ENST00000216877 FOXD4L4Q8WXT5 416 aaPredicted RBP18.26■□□□□ 0.51
PTPRA-201ENST00000216877 SAMD9LQ8IVG5 1584 aa18.26■□□□□ 0.51
PTPRA-201ENST00000216877 CGNL1Q0VF96 1302 aa18.26■□□□□ 0.51
PTPRA-201ENST00000216877 JPH4Q96JJ6 628 aa18.25■□□□□ 0.51
PTPRA-201ENST00000216877 SASS6Q6UVJ0 657 aa18.25■□□□□ 0.51
PTPRA-201ENST00000216877 NPM1P06748 294 aaKnown RBP eCLIP18.25■□□□□ 0.51
PTPRA-201ENST00000216877 SSFA2P28290 1259 aa18.24■□□□□ 0.51
PTPRA-201ENST00000216877 PMFBP1Q8TBY8 1022 aa18.24■□□□□ 0.51
PTPRA-201ENST00000216877 ZSCAN20P17040 1043 aaPredicted RBP18.24■□□□□ 0.51
PTPRA-201ENST00000216877 ANKRD30BQ9BXX2 1392 aa18.24■□□□□ 0.51
PTPRA-201ENST00000216877 RWDD1Q9H446 243 aaPredicted RBP18.23■□□□□ 0.51
PTPRA-201ENST00000216877 SPINK5Q9NQ38 1064 aaPredicted RBP18.23■□□□□ 0.51
PTPRA-201ENST00000216877 KNSTRNQ9Y448 316 aa18.22■□□□□ 0.51
PTPRA-201ENST00000216877 MIA2Q96PC5 1412 aa18.22■□□□□ 0.51
PTPRA-201ENST00000216877 ARHGEF5Q12774 1597 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms