RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W VPS25P47142 202 aa7.14□□□□□ -1.27
UFD1YGR048W HSV2P50079 448 aaPredicted RBP7.14□□□□□ -1.27
UFD1YGR048W LCL3P53153 274 aa7.14□□□□□ -1.27
UFD1YGR048W BIO5P53744 561 aaKnown RBP7.14□□□□□ -1.27
UFD1YGR048W SCW10Q04951 389 aa7.14□□□□□ -1.27
UFD1YGR048W POR1P04840 283 aaKnown RBP7.13□□□□□ -1.27
UFD1YGR048W CDC21P06785 304 aa7.13□□□□□ -1.27
UFD1YGR048W YOL162WP0CF19 215 aa7.13□□□□□ -1.27
UFD1YGR048W SCH9P11792 824 aaKnown RBP7.13□□□□□ -1.27
UFD1YGR048W NOP1P15646 327 aaKnown RBP7.13□□□□□ -1.27
UFD1YGR048W CWP1P28319 239 aa7.13□□□□□ -1.27
UFD1YGR048W MKK1P32490 508 aa7.13□□□□□ -1.27
UFD1YGR048W PDR16P53860 351 aaKnown RBP7.13□□□□□ -1.27
UFD1YGR048W ODC2Q99297 307 aa7.13□□□□□ -1.27
UFD1YGR048W CDC36P06100 191 aaPredicted RBP7.12□□□□□ -1.27
UFD1YGR048W SAC7P17121 654 aa7.12□□□□□ -1.27
UFD1YGR048W FEN2P25621 512 aaKnown RBP7.12□□□□□ -1.27
UFD1YGR048W FUN19P28003 413 aaPredicted RBP7.12□□□□□ -1.27
UFD1YGR048W MDL1P33310 695 aa7.12□□□□□ -1.27
UFD1YGR048W FLO5P38894 1075 aa7.12□□□□□ -1.27
UFD1YGR048W YJR015WP47090 510 aa7.12□□□□□ -1.27
UFD1YGR048W TTI2P47168 421 aa7.12□□□□□ -1.27
UFD1YGR048W BOR1P53838 576 aa7.12□□□□□ -1.27
UFD1YGR048W PDR17P53844 350 aa7.12□□□□□ -1.27
UFD1YGR048W BUD25P85052 153 aa7.12□□□□□ -1.27
UFD1YGR048W DYN2Q02647 92 aa7.12□□□□□ -1.27
UFD1YGR048W YPR114WQ06107 315 aa7.12□□□□□ -1.27
UFD1YGR048W YOL024WQ08172 172 aa7.12□□□□□ -1.27
UFD1YGR048W YCR075W-AQ3E830 75 aa7.12□□□□□ -1.27
UFD1YGR048W RPS9BP05755 195 aaKnown RBP7.11□□□□□ -1.27
UFD1YGR048W CPA1P07258 411 aaKnown RBP7.11□□□□□ -1.27
UFD1YGR048W SEC4P07560 215 aaKnown RBP7.11□□□□□ -1.27
UFD1YGR048W MAK32P23060 363 aa7.11□□□□□ -1.27
UFD1YGR048W SSH4P32343 579 aa7.11□□□□□ -1.27
UFD1YGR048W MDH3P32419 343 aaKnown RBP RIP-Chip data7.11□□□□□ -1.27not detected
UFD1YGR048W TKL2P33315 681 aa7.11□□□□□ -1.27
UFD1YGR048W SLC1P33333 303 aa7.11□□□□□ -1.27
UFD1YGR048W RPL14AP36105 138 aaKnown RBP7.11□□□□□ -1.27
UFD1YGR048W DRE2P36152 348 aa7.11□□□□□ -1.27
UFD1YGR048W RPL14BP38754 138 aaKnown RBP7.11□□□□□ -1.27
UFD1YGR048W RPB11P38902 120 aa7.11□□□□□ -1.27
UFD1YGR048W SPG5P42933 373 aa7.11□□□□□ -1.27
UFD1YGR048W EMC4P53073 190 aa7.11□□□□□ -1.27
UFD1YGR048W PAU4P53427 120 aa7.11□□□□□ -1.27
UFD1YGR048W YNL260CP53846 198 aa7.11□□□□□ -1.27
UFD1YGR048W APS2Q00381 147 aa7.11□□□□□ -1.27
UFD1YGR048W FSH2Q05015 223 aa7.11□□□□□ -1.27
UFD1YGR048W SEI1Q06058 285 aa7.11□□□□□ -1.27
UFD1YGR048W YLR050CQ12155 161 aaKnown RBP7.11□□□□□ -1.27
UFD1YGR048W RKI1Q12189 258 aa7.11□□□□□ -1.27
UFD1YGR048W PDH1Q12428 516 aaKnown RBP7.11□□□□□ -1.27
UFD1YGR048W YIR021W-AQ3E739 70 aa7.11□□□□□ -1.27
UFD1YGR048W PAU1P0CE88 120 aa7.1□□□□□ -1.27
UFD1YGR048W PAU14P0CE89 120 aa7.1□□□□□ -1.27
UFD1YGR048W PAU6P0CE90 120 aa7.1□□□□□ -1.27
UFD1YGR048W PAU18P0CE91 120 aa7.1□□□□□ -1.27
UFD1YGR048W PAU8P0CE92 120 aa7.1□□□□□ -1.27
UFD1YGR048W PAU11P0CE93 120 aa7.1□□□□□ -1.27
UFD1YGR048W SPT15P13393 240 aaKnown RBP7.1□□□□□ -1.27
UFD1YGR048W SDS24P38314 527 aa7.1□□□□□ -1.27
UFD1YGR048W INM1P38710 295 aa7.1□□□□□ -1.27
UFD1YGR048W PAU13P38725 120 aa7.1□□□□□ -1.27
UFD1YGR048W YEL068CP39977 110 aa7.1□□□□□ -1.27
UFD1YGR048W PRE5P40302 234 aaKnown RBP7.1□□□□□ -1.27
UFD1YGR048W GPI14P47088 403 aaKnown RBP7.1□□□□□ -1.27
UFD1YGR048W PMT3P47190 753 aa7.1□□□□□ -1.27
UFD1YGR048W MSY1P48527 492 aa7.1□□□□□ -1.27
UFD1YGR048W RPN14P53196 417 aa7.1□□□□□ -1.27
UFD1YGR048W COX18P53239 316 aa7.1□□□□□ -1.27
UFD1YGR048W CTF19Q02732 369 aa7.1□□□□□ -1.27
UFD1YGR048W YPL077CQ02831 240 aa7.1□□□□□ -1.27
UFD1YGR048W PAU10Q03050 120 aa7.1□□□□□ -1.27
UFD1YGR048W TRI1Q05024 226 aa7.1□□□□□ -1.27
UFD1YGR048W YOL073CQ08232 322 aa7.1□□□□□ -1.27
UFD1YGR048W PAU20Q08322 120 aa7.1□□□□□ -1.27
UFD1YGR048W TGS1Q12052 315 aa7.1□□□□□ -1.27
UFD1YGR048W FOL3Q12676 427 aaPredicted RBP7.1□□□□□ -1.27
UFD1YGR048W PAU9Q3E770 120 aa7.1□□□□□ -1.27
UFD1YGR048W YLR358CO13565 187 aa7.09□□□□□ -1.27
UFD1YGR048W PPA2P28239 310 aa7.09□□□□□ -1.27
UFD1YGR048W TAE1P38340 232 aa7.09□□□□□ -1.27
UFD1YGR048W PRM5P40476 318 aa7.09□□□□□ -1.27
UFD1YGR048W YPS6P40583 537 aa7.09□□□□□ -1.27
UFD1YGR048W CDC1P40986 491 aa7.09□□□□□ -1.27
UFD1YGR048W YJL163CP46996 555 aa7.09□□□□□ -1.27
UFD1YGR048W XPT1P47165 209 aa7.09□□□□□ -1.27
UFD1YGR048W DUG3P53871 357 aa7.09□□□□□ -1.27
UFD1YGR048W CAB5Q03941 241 aa7.09□□□□□ -1.27
UFD1YGR048W SNO4Q04902 237 aa7.09□□□□□ -1.27
UFD1YGR048W COQ11Q05892 277 aa7.09□□□□□ -1.27
UFD1YGR048W HSP33Q08914 237 aaKnown RBP7.09□□□□□ -1.27
UFD1YGR048W HSP32Q08992 237 aa7.09□□□□□ -1.27
UFD1YGR048W ALG6Q12001 544 aaKnown RBP7.09□□□□□ -1.27
UFD1YGR048W YPL162CQ12042 273 aa7.09□□□□□ -1.27
UFD1YGR048W RRG1Q12167 365 aaPredicted RBP7.09□□□□□ -1.27
UFD1YGR048W YER190C-BP0CX94 160 aa7.08□□□□□ -1.28
UFD1YGR048W YEL077W-AP0CX95 160 aa7.08□□□□□ -1.28
UFD1YGR048W YGR296C-BP0CX96 160 aa7.08□□□□□ -1.28
UFD1YGR048W YPL283W-BP0CX97 160 aa7.08□□□□□ -1.28
UFD1YGR048W YPR204C-AP0CX98 160 aa7.08□□□□□ -1.28
Retrieved 100 of 5,963 RNA–protein pairs in 45 ms