RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W MIC12P38341 106 aa0.88□□□□□ -2.27
CDC39YCR093W YJR079WP47126 109 aa0.88□□□□□ -2.27
CDC39YCR093W ABP140Q08641 628 aaKnown RBP0.88□□□□□ -2.27
CDC39YCR093W SLM3Q12093 417 aa0.88□□□□□ -2.27
CDC39YCR093W RRP36Q12481 300 aaPredicted RBP0.88□□□□□ -2.27
CDC39YCR093W BOL1Q3E793 110 aa0.88□□□□□ -2.27
CDC39YCR093W ROM2P51862 1356 aaKnown RBP0.88□□□□□ -2.27
CDC39YCR093W PBI2P0CT04 75 aaKnown RBP0.88□□□□□ -2.27
CDC39YCR093W GCY1P14065 312 aaKnown RBP RIP-Chip data0.88□□□□□ -2.27not detected
CDC39YCR093W QRI5P32344 111 aa0.88□□□□□ -2.27
CDC39YCR093W ARC19P33204 171 aaKnown RBP0.88□□□□□ -2.27
CDC39YCR093W SHE2P36068 246 aaKnown RBP RIP-Chip data0.88□□□□□ -2.27not detected
CDC39YCR093W ATG12P38316 186 aa0.88□□□□□ -2.27
CDC39YCR093W EGD2P38879 174 aaKnown RBP0.88□□□□□ -2.27
CDC39YCR093W COS4P43542 379 aa0.88□□□□□ -2.27
CDC39YCR093W SNZ3P43545 298 aa0.88□□□□□ -2.27
CDC39YCR093W ECM19Q06011 112 aa0.88□□□□□ -2.27
CDC39YCR093W YLR030WQ07967 263 aa0.88□□□□□ -2.27
CDC39YCR093W COX5AP00424 153 aa0.88□□□□□ -2.27
CDC39YCR093W HIS3P06633 220 aa0.88□□□□□ -2.27
CDC39YCR093W SNF4P12904 322 aa0.88□□□□□ -2.27
CDC39YCR093W BET1P22804 142 aa0.88□□□□□ -2.27
CDC39YCR093W PPQ1P32945 549 aa0.88□□□□□ -2.27
CDC39YCR093W RCN1P36054 211 aa0.88□□□□□ -2.27
CDC39YCR093W FMP33P46998 180 aa0.88□□□□□ -2.27
CDC39YCR093W MIC26P50087 233 aa0.88□□□□□ -2.27
CDC39YCR093W NBP35P52920 328 aa0.88□□□□□ -2.27
CDC39YCR093W GTR2P53290 341 aa0.88□□□□□ -2.27
CDC39YCR093W YLR126CQ12288 251 aa0.88□□□□□ -2.27
CDC39YCR093W TDH2P00358 332 aaKnown RBP0.87□□□□□ -2.27
CDC39YCR093W DSF1P0CX08 502 aa0.87□□□□□ -2.27
CDC39YCR093W YNR073CP0CX09 502 aa0.87□□□□□ -2.27
CDC39YCR093W YET1P35723 206 aa0.87□□□□□ -2.27
CDC39YCR093W LDB7P38210 180 aa0.87□□□□□ -2.27
CDC39YCR093W TOS2P50078 622 aa0.87□□□□□ -2.27
CDC39YCR093W SNZ2P53824 298 aa0.87□□□□□ -2.27
CDC39YCR093W YMR114CQ04471 368 aaKnown RBP0.87□□□□□ -2.27
CDC39YCR093W YDR018CQ12185 396 aa0.87□□□□□ -2.27
CDC39YCR093W CDC36P06100 191 aaPredicted RBP0.87□□□□□ -2.27
CDC39YCR093W FBA1P14540 359 aaKnown RBP0.87□□□□□ -2.27
CDC39YCR093W SEC22P22214 214 aa0.87□□□□□ -2.27
CDC39YCR093W YCR087C-AP37263 153 aa0.87□□□□□ -2.27
CDC39YCR093W YMR244WQ04018 355 aa0.87□□□□□ -2.27
CDC39YCR093W ATG38Q05789 226 aaKnown RBP0.87□□□□□ -2.27
CDC39YCR093W RPL26AP05743 127 aaKnown RBP0.87□□□□□ -2.27
CDC39YCR093W ATP7P30902 174 aa0.87□□□□□ -2.27
CDC39YCR093W HOC1P47124 396 aa0.87□□□□□ -2.27
CDC39YCR093W NUP57P48837 541 aa0.87□□□□□ -2.27
CDC39YCR093W RPL26BP53221 127 aaKnown RBP0.87□□□□□ -2.27
CDC39YCR093W TPC1P53257 314 aa0.87□□□□□ -2.27
CDC39YCR093W YNL140CP53910 189 aa0.87□□□□□ -2.27
CDC39YCR093W PEX12Q04370 399 aa0.87□□□□□ -2.27
CDC39YCR093W TPO4Q12256 659 aa0.87□□□□□ -2.27
CDC39YCR093W FAB1P34756 2278 aa0.87□□□□□ -2.27
CDC39YCR093W SPT3P06844 337 aa0.87□□□□□ -2.27
CDC39YCR093W YPC1P38298 316 aa0.87□□□□□ -2.27
CDC39YCR093W ARN2P38724 620 aa0.87□□□□□ -2.27
CDC39YCR093W SEC72P39742 193 aaKnown RBP0.87□□□□□ -2.27
CDC39YCR093W HMF1P40037 129 aaKnown RBP0.87□□□□□ -2.27
CDC39YCR093W GLE2P40066 365 aa0.87□□□□□ -2.27
CDC39YCR093W PEP8P40335 379 aa0.87□□□□□ -2.27
CDC39YCR093W YJL028WP47062 111 aa0.87□□□□□ -2.27
CDC39YCR093W XPT1P47165 209 aa0.87□□□□□ -2.27
CDC39YCR093W MCM22P47167 239 aa0.87□□□□□ -2.27
CDC39YCR093W AKR2Q12013 749 aa0.87□□□□□ -2.27
CDC39YCR093W GEP5Q12393 293 aa0.87□□□□□ -2.27
CDC39YCR093W DCN1Q12395 269 aa0.87□□□□□ -2.27
CDC39YCR093W PDS1P40316 373 aaPredicted RBP0.87□□□□□ -2.27
CDC39YCR093W YGL159WP53110 370 aa0.87□□□□□ -2.27
CDC39YCR093W YMR295CQ03559 197 aa0.87□□□□□ -2.27
CDC39YCR093W MRPS8Q03799 155 aa0.87□□□□□ -2.27
CDC39YCR093W TFC1P32367 649 aa0.86□□□□□ -2.27
CDC39YCR093W YBL081WP38180 368 aaKnown RBP0.86□□□□□ -2.27
CDC39YCR093W ERV15P38312 142 aa0.86□□□□□ -2.27
CDC39YCR093W SHG1P38337 142 aa0.86□□□□□ -2.27
CDC39YCR093W GOS1P38736 223 aa0.86□□□□□ -2.27
CDC39YCR093W RPC17P47076 161 aa0.86□□□□□ -2.27
CDC39YCR093W CUE4Q04201 117 aaPredicted RBP0.86□□□□□ -2.27
CDC39YCR093W SPG3Q04398 127 aaPredicted RBP0.86□□□□□ -2.27
CDC39YCR093W YOR029WQ12243 111 aa0.86□□□□□ -2.27
CDC39YCR093W ADH1P00330 348 aaKnown RBP0.86□□□□□ -2.27
CDC39YCR093W FCY2P17064 533 aa0.86□□□□□ -2.27
CDC39YCR093W CLB6P32943 380 aa0.86□□□□□ -2.27
CDC39YCR093W APS1P35181 156 aa0.86□□□□□ -2.27
CDC39YCR093W MRPL49P40858 161 aaPredicted RBP0.86□□□□□ -2.27
CDC39YCR093W ARP3P47117 449 aaKnown RBP0.86□□□□□ -2.27
CDC39YCR093W PDR17P53844 350 aa0.86□□□□□ -2.27
CDC39YCR093W YDR034W-BQ6Q5X2 51 aa0.86□□□□□ -2.27
CDC39YCR093W GCN3P14741 305 aa0.86□□□□□ -2.27
CDC39YCR093W MED6P38782 295 aa0.86□□□□□ -2.27
CDC39YCR093W YER134CP40081 178 aa0.86□□□□□ -2.27
CDC39YCR093W RRG9P40156 214 aa0.86□□□□□ -2.27
CDC39YCR093W MNN5P46982 586 aa0.86□□□□□ -2.27
CDC39YCR093W BUD25P85052 153 aa0.86□□□□□ -2.27
CDC39YCR093W SCS7Q03529 384 aa0.86□□□□□ -2.27
CDC39YCR093W DCR2Q05924 578 aa0.86□□□□□ -2.27
CDC39YCR093W MET2P08465 486 aa0.86□□□□□ -2.27
CDC39YCR093W SNA3P14359 133 aa0.86□□□□□ -2.27
CDC39YCR093W SNF6P18888 332 aa0.86□□□□□ -2.27
CDC39YCR093W PRE7P23724 241 aaKnown RBP0.86□□□□□ -2.27
Retrieved 100 of 5,963 RNA–protein pairs in 55.4 ms