RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 ADSSL1Q8N142 457 aa27.86■■■□□ 2.05
TRIM28-204ENST00000594806 RIN2Q8WYP3 895 aaPredicted RBP27.86■■■□□ 2.05
TRIM28-204ENST00000594806 DHTKD1Q96HY7 919 aaPredicted RBP27.86■■■□□ 2.05
TRIM28-204ENST00000594806 ANKRD36BP1Q96IX9 119 aa27.86■■■□□ 2.05
TRIM28-204ENST00000594806 KLHL5Q96PQ7 755 aa27.86■■■□□ 2.05
TRIM28-204ENST00000594806 TSG101Q99816 390 aa27.86■■■□□ 2.05
TRIM28-204ENST00000594806 INTS13Q9NVM9 706 aa27.86■■■□□ 2.05
TRIM28-204ENST00000594806 CLDND1Q9NY35 253 aa27.86■■■□□ 2.05
TRIM28-204ENST00000594806 VWA8A3KMH1 1905 aa27.86■■■□□ 2.05
TRIM28-204ENST00000594806 PSMA7O14818 248 aa27.85■■■□□ 2.05
TRIM28-204ENST00000594806 CLASP2O75122 1294 aaKnown RBP27.85■■■□□ 2.05
TRIM28-204ENST00000594806 ADH1AP07327 375 aa27.85■■■□□ 2.05
TRIM28-204ENST00000594806 CNPP09543 421 aaKnown RBP27.85■■■□□ 2.05
TRIM28-204ENST00000594806 TMEM191BP0C7N4 346 aa27.85■■■□□ 2.05
TRIM28-204ENST00000594806 PNPLA4P41247 253 aa27.85■■■□□ 2.05
TRIM28-204ENST00000594806 BRCC3P46736 316 aa27.85■■■□□ 2.05
TRIM28-204ENST00000594806 WNT7BP56706 349 aa27.85■■■□□ 2.05
TRIM28-204ENST00000594806 CAMK4Q16566 473 aa27.85■■■□□ 2.05
TRIM28-204ENST00000594806 DUOXA2Q1HG44 320 aa27.85■■■□□ 2.05
TRIM28-204ENST00000594806 USP37Q86T82 979 aa27.85■■■□□ 2.05
TRIM28-204ENST00000594806 CEP57Q86XR8 500 aa27.85■■■□□ 2.05
TRIM28-204ENST00000594806 ATXN2LQ8WWM7 1075 aaKnown RBP27.85■■■□□ 2.05
TRIM28-204ENST00000594806 ITGA11Q9UKX5 1188 aa27.85■■■□□ 2.05
TRIM28-204ENST00000594806 C2CD2LO14523 706 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 TNNC2P02585 160 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 NR2F2P24468 414 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 GTF2F1P35269 517 aaKnown RBP eCLIP27.84■■■□□ 2.051e-6■■□□□ 14.1
TRIM28-204ENST00000594806 GUCY2FP51841 1108 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 LRRC63Q05C16 580 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 ADAM9Q13443 819 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 KCNC3Q14003 757 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 RTP2Q5QGT7 225 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 ANKS3Q6ZW76 656 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 APPL2Q8NEU8 664 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 ZNF560Q96MR9 790 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 NUP62CLQ9H1M0 184 aa27.84■■■□□ 2.05
TRIM28-204ENST00000594806 COL6A3P12111 3177 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 M0QZQ0 153 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 IGFBP6P24592 240 aaPredicted RBP27.83■■■□□ 2.05
TRIM28-204ENST00000594806 KLRC2P26717 231 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 AP3M2P53677 418 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 LILRA4P59901 499 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 ENPEPQ07075 957 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 FOXR2Q6PJQ5 311 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 LNX1Q8TBB1 728 aaPredicted RBP27.83■■■□□ 2.05
TRIM28-204ENST00000594806 CASP10Q92851 521 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 B3GALT6Q96L58 329 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 CGRRF1Q99675 332 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 DPP7Q9UHL4 492 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 PCDHB8Q9UN66 801 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 R3HCC1Q9Y3T6 440 aaKnown RBP27.83■■■□□ 2.05
TRIM28-204ENST00000594806 SCN1AP35498 2009 aa27.83■■■□□ 2.05
TRIM28-204ENST00000594806 TULP1O00294 542 aaPredicted RBP27.82■■■□□ 2.04
TRIM28-204ENST00000594806 TEX28O15482 410 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 MBD3O95983 291 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 TNNI1P19237 187 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 CCNE1P24864 410 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 NDUFV1P49821 464 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 TAF6P49848 677 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 RBP5P82980 135 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 PSMD5Q16401 504 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 CEP135Q66GS9 1140 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 LRRC52Q8N7C0 313 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 C1orf127Q8N9H9 656 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 TMC2Q8TDI7 906 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 CCDC127Q96BQ5 260 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 MKNK1Q9BUB5 465 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 PRDM6Q9NQX0 595 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 BACE2Q9Y5Z0 518 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 HCFC2Q9Y5Z7 792 aa27.82■■■□□ 2.04
TRIM28-204ENST00000594806 H7C4K7 107 aa27.81■■■□□ 2.04
TRIM28-204ENST00000594806 CETN3O15182 167 aa27.81■■■□□ 2.04
TRIM28-204ENST00000594806 DLATP10515 647 aaKnown RBP27.81■■■□□ 2.04
TRIM28-204ENST00000594806 TKTP29401 623 aaKnown RBP27.81■■■□□ 2.04
TRIM28-204ENST00000594806 PSMC2P35998 433 aaKnown RBP27.81■■■□□ 2.04
TRIM28-204ENST00000594806 LTBRP36941 435 aa27.81■■■□□ 2.04
TRIM28-204ENST00000594806 CLDN10P78369 228 aa27.81■■■□□ 2.04
TRIM28-204ENST00000594806 MRPS5P82675 430 aaKnown RBP27.81■■■□□ 2.04
TRIM28-204ENST00000594806 PUS10Q3MIT2 529 aaKnown RBP27.81■■■□□ 2.04
TRIM28-204ENST00000594806 ISM2Q6H9L7 571 aa27.81■■■□□ 2.04
TRIM28-204ENST00000594806 DSTYKQ6XUX3 929 aa27.81■■■□□ 2.04
TRIM28-204ENST00000594806 EP400NLQ6ZTU2 488 aa27.81■■■□□ 2.04
TRIM28-204ENST00000594806 CSGALNACT2Q8N6G5 542 aa27.81■■■□□ 2.04
TRIM28-204ENST00000594806 PARD3BQ8TEW8 1205 aa27.81■■■□□ 2.04
TRIM28-204ENST00000594806 SLC22A17Q8WUG5 538 aa27.81■■■□□ 2.04
TRIM28-204ENST00000594806 OXCT2Q9BYC2 517 aaPredicted RBP27.81■■■□□ 2.04
TRIM28-204ENST00000594806 MTMR12Q9C0I1 747 aa27.81■■■□□ 2.04
TRIM28-204ENST00000594806 I3L4J1 428 aa27.8■■■□□ 2.04
TRIM28-204ENST00000594806 GLP2RO95838 553 aa27.8■■■□□ 2.04
TRIM28-204ENST00000594806 ITGB3P05106 788 aa27.8■■■□□ 2.04
TRIM28-204ENST00000594806 HOXB8P17481 243 aaPredicted RBP27.8■■■□□ 2.04
TRIM28-204ENST00000594806 TYMPP19971 482 aa27.8■■■□□ 2.04
TRIM28-204ENST00000594806 BMP6P22004 513 aa27.8■■■□□ 2.04
TRIM28-204ENST00000594806 KCNA5P22460 613 aa27.8■■■□□ 2.04
TRIM28-204ENST00000594806 FKBP3Q00688 224 aaKnown RBP27.8■■■□□ 2.04
TRIM28-204ENST00000594806 LEXMQ3ZCV2 418 aa27.8■■■□□ 2.04
TRIM28-204ENST00000594806 SV2CQ496J9 727 aa27.8■■■□□ 2.04
TRIM28-204ENST00000594806 ELMSAN1Q6PJG2 1045 aa27.8■■■□□ 2.04
TRIM28-204ENST00000594806 INTS8Q75QN2 995 aaKnown RBP27.8■■■□□ 2.04
TRIM28-204ENST00000594806 PHF6Q8IWS0 365 aaKnown RBP eCLIP27.8■■■□□ 2.047e-7■□□□□ 11
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms