RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ATICP31939 592 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 GPS2Q13227 327 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 ITGA7Q13683 1181 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 TMEM132DQ14C87 1099 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 PTGISQ16647 500 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 LONRF2Q1L5Z9 754 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 ALKBH5Q6P6C2 394 aaKnown RBP19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 CEP120Q8N960 986 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 UBXN6Q9BZV1 441 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 NAGPAQ9UK23 515 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 CITO14578 2027 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 KRT5P13647 590 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 P4HA1P13674 534 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 HTRA3P83110 453 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 PTK7Q13308 1070 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 ZNF699Q32M78 642 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 CCDC70Q6NSX1 233 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 HDXQ7Z353 690 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 ZNF677Q86XU0 584 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 GPIHBP1Q8IV16 184 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 PPP1R13LQ8WUF5 828 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 TATDN2Q93075 761 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 NOX5Q96PH1 765 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 PI4K2AQ9BTU6 479 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 FUT8Q9BYC5 575 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 NIF3L1Q9GZT8 377 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 CDHR5Q9HBB8 845 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 CHST12Q9NRB3 414 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 RNF14Q9UBS8 474 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 ITGA11Q9UKX5 1188 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 SNX12Q9UMY4 172 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 CDY2AQ9Y6F7 541 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 KBTBD13C9JR72 458 aa19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 MAP2K7O14733 419 aa19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 XPOTO43592 962 aaKnown RBP19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 H2AFZP0C0S5 128 aa19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 FGFR4P22455 802 aa19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 PLA2G4AP47712 749 aa19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 MAP9Q49MG5 647 aa19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 PPP1R2P3Q6NXS1 205 aa19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 H2AFVQ71UI9 128 aa19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 EFCAB13Q8IY85 973 aa19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 CALR3Q96L12 384 aaKnown RBP19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 FAM124BQ9H5Z6 455 aaPredicted RBP19.5■□□□□ 0.71
CCDC88C-203ENST00000389856 BTNL10A8MVZ5 291 aa19.49■□□□□ 0.71
CCDC88C-203ENST00000389856 GPR182O15218 404 aa19.49■□□□□ 0.71
CCDC88C-203ENST00000389856 RPS6KA5O75582 802 aa19.49■□□□□ 0.71
CCDC88C-203ENST00000389856 HSPA6P17066 643 aa19.49■□□□□ 0.71
CCDC88C-203ENST00000389856 SLC10A6Q3KNW5 377 aa19.49■□□□□ 0.71
CCDC88C-203ENST00000389856 JADE1Q6IE81 842 aa19.49■□□□□ 0.71
CCDC88C-203ENST00000389856 U2AF1L4Q8WU68 220 aaKnown RBP19.49■□□□□ 0.71
CCDC88C-203ENST00000389856 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.49■□□□□ 0.715e-8■■■■■ 163.4
CCDC88C-203ENST00000389856 SEPT11Q9NVA2 429 aaKnown RBP19.49■□□□□ 0.71
CCDC88C-203ENST00000389856 HYOU1Q9Y4L1 999 aa19.49■□□□□ 0.71
CCDC88C-203ENST00000389856 PCDHB2Q9Y5E7 798 aa19.49■□□□□ 0.71
CCDC88C-203ENST00000389856 PTCH2Q9Y6C5 1203 aa19.49■□□□□ 0.71
CCDC88C-203ENST00000389856 MACROD2A1Z1Q3 448 aa19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 KRT19P08727 400 aa19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 RBP5P82980 135 aa19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 BEND6Q5SZJ8 279 aaPredicted RBP19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 TTC39CQ8N584 583 aa19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 SLC30A5Q8TAD4 765 aa19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 KAT5Q92993 513 aa19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 SENP6Q9GZR1 1112 aaPredicted RBP19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 EPC1Q9H2F5 836 aa19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 ACBD3Q9H3P7 528 aa19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 FRMPD3Q5JV73 1810 aa19.48■□□□□ 0.71
CCDC88C-203ENST00000389856 A0A0U1RQG5 324 aaPredicted RBP19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 DDX3XO00571 662 aaKnown RBP eCLIP19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 CYP26A1O43174 497 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 SEC31AO94979 1220 aaKnown RBP19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 NFICP08651 508 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 THPOP40225 353 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 MYL6P60660 151 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 CDR2Q01850 454 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 ZNF667Q5HYK9 610 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 TWF2Q6IBS0 349 aaKnown RBP19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 GLYCTKQ8IVS8 523 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 TMEM192Q8IY95 271 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 USP38Q8NB14 1042 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 CAGE1Q8TC20 777 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 EPS8L1Q8TE68 723 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 TMEM40Q8WWA1 233 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 KIF12Q96FN5 646 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 SNX27Q96L92 541 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 SYT11Q9BT88 431 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 PCDHB4Q9Y5E5 795 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 SQORQ9Y6N5 450 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 ENC1O14682 589 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 STAU1O95793 577 aaKnown RBP19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 GZMAP12544 262 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 CYP11B1P15538 503 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 NAP1L1P55209 391 aaKnown RBP19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 MYO1EQ12965 1108 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 LHX8Q68G74 356 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 FAM228AQ86W67 206 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 RPUSD2Q8IZ73 545 aaKnown RBP19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 MMGT1Q8N4V1 131 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms