RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W ABF2Q02486 183 aa0.75□□□□□ -2.29
RPF1YHR088W POL30P15873 258 aaKnown RBP0.74□□□□□ -2.29
RPF1YHR088W FCY2P17064 533 aa0.74□□□□□ -2.29
RPF1YHR088W YKL075CP36083 450 aa0.74□□□□□ -2.29
RPF1YHR088W YHR127WP38833 243 aaKnown RBP0.74□□□□□ -2.29
RPF1YHR088W RPL37AP49166 88 aaKnown RBP0.74□□□□□ -2.29
RPF1YHR088W RHO3Q00245 231 aaKnown RBP0.74□□□□□ -2.29
RPF1YHR088W YMR007WQ03675 126 aa0.74□□□□□ -2.29
RPF1YHR088W SNU23Q12368 194 aaPredicted RBP0.74□□□□□ -2.29
RPF1YHR088W PSF1Q12488 208 aa0.74□□□□□ -2.29
RPF1YHR088W RPS5P26783 225 aaKnown RBP0.73□□□□□ -2.29
RPF1YHR088W VPS21P36017 210 aaKnown RBP0.73□□□□□ -2.29
RPF1YHR088W TVP38P36164 337 aa0.73□□□□□ -2.29
RPF1YHR088W YBR063CP38083 404 aa0.73□□□□□ -2.29
RPF1YHR088W GAA1P39012 614 aa0.73□□□□□ -2.29
RPF1YHR088W RIO2P40160 425 aaKnown RBP0.73□□□□□ -2.29
RPF1YHR088W MEP1P40260 492 aa0.73□□□□□ -2.29
RPF1YHR088W CAT5P41735 233 aa0.73□□□□□ -2.29
RPF1YHR088W DOC1P53068 250 aa0.73□□□□□ -2.29
RPF1YHR088W MPP6P53725 186 aaPredicted RBP0.73□□□□□ -2.29
RPF1YHR088W CUS2P53830 285 aaPredicted RBP0.73□□□□□ -2.29
RPF1YHR088W DID2P69771 204 aa0.73□□□□□ -2.29
RPF1YHR088W TRM12Q04235 462 aa0.73□□□□□ -2.29
RPF1YHR088W SSQ1Q05931 657 aaPredicted RBP0.73□□□□□ -2.29
RPF1YHR088W YPL229WQ99395 206 aa0.73□□□□□ -2.29
RPF1YHR088W YRB2P40517 327 aa0.72□□□□□ -2.29
RPF1YHR088W AIF1P52923 378 aa0.72□□□□□ -2.29
RPF1YHR088W YML096WQ04489 525 aa0.72□□□□□ -2.29
RPF1YHR088W SDO1Q07953 250 aaKnown RBP0.72□□□□□ -2.29
RPF1YHR088W MSA1Q08471 629 aa0.72□□□□□ -2.29
RPF1YHR088W MET5P47169 1442 aa0.72□□□□□ -2.29
RPF1YHR088W MSB2P32334 1306 aa0.71□□□□□ -2.3
RPF1YHR088W TFC1P32367 649 aa0.71□□□□□ -2.3
RPF1YHR088W HUA1P40325 198 aa0.71□□□□□ -2.3
RPF1YHR088W SAY1P53324 424 aa0.71□□□□□ -2.3
RPF1YHR088W YNL010WP53981 241 aaKnown RBP0.71□□□□□ -2.3
RPF1YHR088W SPG3Q04398 127 aaPredicted RBP0.71□□□□□ -2.3
RPF1YHR088W REP2P03872 296 aa0.7□□□□□ -2.3
RPF1YHR088W YEL067CP39978 195 aa0.7□□□□□ -2.3
RPF1YHR088W YMR144WP40214 342 aaKnown RBP0.7□□□□□ -2.3
RPF1YHR088W YML108WQ03759 105 aa0.7□□□□□ -2.3
RPF1YHR088W AIM36Q03798 255 aa0.7□□□□□ -2.3
RPF1YHR088W BTS1Q12051 335 aa0.7□□□□□ -2.3
RPF1YHR088W MSH5Q12175 901 aa0.7□□□□□ -2.3
RPF1YHR088W YDL180WQ12301 547 aa0.7□□□□□ -2.3
RPF1YHR088W YNL146C-AQ3E7Z1 64 aa0.7□□□□□ -2.3
RPF1YHR088W MSF1P08425 469 aa0.69□□□□□ -2.3
RPF1YHR088W AQY2P0CD90 149 aa0.69□□□□□ -2.3
RPF1YHR088W YET1P35723 206 aa0.69□□□□□ -2.3
RPF1YHR088W RIB1P38066 345 aa0.69□□□□□ -2.3
RPF1YHR088W RPL37BP51402 88 aaKnown RBP0.69□□□□□ -2.3
RPF1YHR088W POP3P53833 195 aaPredicted RBP0.69□□□□□ -2.3
RPF1YHR088W NOP13P53883 403 aaKnown RBP RIP-Chip data0.69□□□□□ -2.3not detected
RPF1YHR088W PDR18P53756 1333 aa0.68□□□□□ -2.3
RPF1YHR088W YHR139C-AO13536 103 aa0.68□□□□□ -2.3
RPF1YHR088W MRPS28P21771 286 aa0.68□□□□□ -2.3
RPF1YHR088W PBN1P25580 416 aa0.68□□□□□ -2.3
RPF1YHR088W UMP1P38293 148 aa0.68□□□□□ -2.3
RPF1YHR088W ERJ5P43613 295 aaPredicted RBP0.68□□□□□ -2.3
RPF1YHR088W MRPL37P36532 105 aa0.67□□□□□ -2.3
RPF1YHR088W IRC22P40006 225 aa0.67□□□□□ -2.3
RPF1YHR088W PEX17P40155 199 aa0.67□□□□□ -2.3
RPF1YHR088W LSO2Q3E772 92 aaKnown RBP0.67□□□□□ -2.3
RPF1YHR088W NSP1P14907 823 aaKnown RBP0.66□□□□□ -2.3
RPF1YHR088W YAE1P47118 141 aaPredicted RBP0.66□□□□□ -2.3
RPF1YHR088W MCM22P47167 239 aa0.66□□□□□ -2.3
RPF1YHR088W YJR149WP47177 404 aa0.66□□□□□ -2.3
RPF1YHR088W YNR077CP53758 84 aa0.66□□□□□ -2.3
RPF1YHR088W YMD8Q03697 442 aa0.66□□□□□ -2.3
RPF1YHR088W YLR126CQ12288 251 aa0.66□□□□□ -2.3
RPF1YHR088W YPR170W-BP0C5R9 85 aa0.65□□□□□ -2.31
RPF1YHR088W SNC2P33328 115 aa0.65□□□□□ -2.31
RPF1YHR088W SHE2P36068 246 aaKnown RBP RIP-Chip data0.65□□□□□ -2.31not detected
RPF1YHR088W YBR209WP38311 105 aa0.65□□□□□ -2.31
RPF1YHR088W HOC1P47124 396 aa0.65□□□□□ -2.31
RPF1YHR088W FSF1Q12029 327 aaKnown RBP0.65□□□□□ -2.31
RPF1YHR088W POP4P38336 279 aa0.64□□□□□ -2.31
RPF1YHR088W SOK1P40317 901 aa0.64□□□□□ -2.31
RPF1YHR088W KNH1P50112 268 aa0.64□□□□□ -2.31
RPF1YHR088W SWP1Q02795 286 aa0.64□□□□□ -2.31
RPF1YHR088W YDR248CQ03786 193 aa0.64□□□□□ -2.31
RPF1YHR088W LPP1Q04396 274 aa0.64□□□□□ -2.31
RPF1YHR088W ATG40Q99325 256 aa0.64□□□□□ -2.31
RPF1YHR088W ATG22P25568 528 aa0.63□□□□□ -2.31
RPF1YHR088W SRB4P32569 687 aa0.63□□□□□ -2.31
RPF1YHR088W DOG2P38773 246 aa0.63□□□□□ -2.31
RPF1YHR088W EDC3P39998 551 aaKnown RBP0.63□□□□□ -2.31
RPF1YHR088W FLX1P40464 311 aa0.63□□□□□ -2.31
RPF1YHR088W GAS3Q03655 524 aa0.63□□□□□ -2.31
RPF1YHR088W TSC3Q3E790 80 aa0.63□□□□□ -2.31
RPF1YHR088W TCP1P12612 559 aaKnown RBP0.62□□□□□ -2.31
RPF1YHR088W OM45P16547 393 aa0.62□□□□□ -2.31
RPF1YHR088W SRY1P36007 326 aa0.62□□□□□ -2.31
RPF1YHR088W MRPL17P36528 281 aa0.62□□□□□ -2.31
RPF1YHR088W OPY1P38271 328 aa0.62□□□□□ -2.31
RPF1YHR088W URA8P38627 578 aaPredicted RBP0.62□□□□□ -2.31
RPF1YHR088W SIP3P38717 1229 aa0.62□□□□□ -2.31
RPF1YHR088W YFL065CP43539 102 aa0.62□□□□□ -2.31
RPF1YHR088W ARO8P53090 500 aaKnown RBP0.62□□□□□ -2.31
RPF1YHR088W SNZ1Q03148 297 aa0.62□□□□□ -2.31
Retrieved 100 of 5,963 RNA–protein pairs in 31.2 ms