RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TMEM130Q8N3G9 435 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 PLEKHO2Q8TD55 490 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 PARD3BQ8TEW8 1205 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 TGS1Q96RS0 853 aaKnown RBP16.19■□□□□ 0.18
NUP54-213ENST00000513352 CERS4Q9HA82 394 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 METTL14Q9HCE5 456 aaKnown RBP16.19■□□□□ 0.18
NUP54-213ENST00000513352 DPP3Q9NY33 737 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 FAN1Q9Y2M0 1017 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 PCDHB12Q9Y5F1 795 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 RANBP2P49792 3224 aaKnown RBP16.19■□□□□ 0.18
NUP54-213ENST00000513352 PTPRJQ12913 1337 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 SMTNL1A8MU46 457 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 PODXLO00592 558 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 PHACTR2O75167 634 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 ALDH2P05091 517 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 KRT19P08727 400 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 TAP1Q03518 808 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 DSC1Q08554 894 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 DUOXA2Q1HG44 320 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 FRMD5Q7Z6J6 570 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 NT5DC4Q86YG4 428 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 OR5B17Q8NGF7 314 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 HASPINQ8TF76 798 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 UROC1Q96N76 676 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 TMEM175Q9BSA9 504 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 C17orf80Q9BSJ5 609 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 SAMSN1Q9NSI8 373 aaKnown RBP16.18■□□□□ 0.18
NUP54-213ENST00000513352 INTS13Q9NVM9 706 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 RWDD3Q9Y3V2 267 aa16.18■□□□□ 0.18
NUP54-213ENST00000513352 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.18■□□□□ 0.18
NUP54-213ENST00000513352 PES1O00541 588 aaKnown RBP16.17■□□□□ 0.18
NUP54-213ENST00000513352 NRP1O14786 923 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 STX10O60499 249 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 GALTP07902 379 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 CLCNKBP51801 687 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 NAB2Q15742 525 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 ZBTB6Q15916 424 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 SPRED2Q7Z698 418 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 ARNTL2Q8WYA1 636 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 CLP1Q92989 425 aaKnown RBP16.17■□□□□ 0.18
NUP54-213ENST00000513352 DDX27Q96GQ7 796 aaKnown RBP16.17■□□□□ 0.18
NUP54-213ENST00000513352 BPIFA3Q9BQP9 254 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 PAAF1Q9BRP4 392 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 COLEC11Q9BWP8 271 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 CBX8Q9HC52 389 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 FANCLQ9NW38 375 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 SPG21Q9NZD8 308 aa16.17■□□□□ 0.18
NUP54-213ENST00000513352 LAMA2P24043 3122 aaKnown RBP16.17■□□□□ 0.18
NUP54-213ENST00000513352 MYO9BQ13459 2157 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 KCNJ18B7U540 433 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 CAVIN2O95810 425 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 ITGB3P05106 788 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 CYP3A5P20815 502 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 POLR2BP30876 1174 aaKnown RBP16.16■□□□□ 0.18
NUP54-213ENST00000513352 PPM1AP35813 382 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 BMPR1AP36894 532 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 GCLMP48507 274 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 AP3M2P53677 418 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 ZNF445P59923 1031 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 TPM4P67936 248 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 KCNJ12Q14500 433 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 DHX40Q8IX18 779 aaKnown RBP16.16■□□□□ 0.18
NUP54-213ENST00000513352 C1orf127Q8N9H9 656 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 FBXO22Q8NEZ5 403 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 BORCS6Q96GS4 357 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 TMEM169Q96HH4 297 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 SAMD11Q96NU1 681 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 ITGA11Q9UKX5 1188 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 AGAP1Q9UPQ3 857 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 NUB1Q9Y5A7 615 aa16.16■□□□□ 0.18
NUP54-213ENST00000513352 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.16■□□□□ 0.18
NUP54-213ENST00000513352 CARNS1A5YM72 827 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 F8W810 466 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 GOLGA6L19H0YKK7 550 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 SOX1O00570 391 aaPredicted RBP16.15■□□□□ 0.18
NUP54-213ENST00000513352 IKBKBO14920 756 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 TADA2AO75478 443 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 B3GAT3O94766 335 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 CSPG5O95196 566 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 KIF4AO95239 1232 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 TPM2P07951 284 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 PRKCSHP14314 528 aaPredicted RBP16.15■□□□□ 0.18
NUP54-213ENST00000513352 CDK11BP21127 795 aaKnown RBP16.15■□□□□ 0.18
NUP54-213ENST00000513352 RPL9P32969 192 aaKnown RBP16.15■□□□□ 0.18
NUP54-213ENST00000513352 PIK3CAP42336 1068 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 ERVK-21P61565 698 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 TRPC3Q13507 836 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 EPC2Q52LR7 807 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 C9orf57Q5W0N0 161 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 TRAPPC11Q7Z392 1133 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 LUZP1Q86V48 1076 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 IRF2BP1Q8IU81 584 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 KLHL23Q8NBE8 558 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 ANKRD20A12PQ8NF67 263 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 FAM200AQ8TCP9 573 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 ZNF516Q92618 1163 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 ANP32EQ9BTT0 268 aa16.15■□□□□ 0.18
NUP54-213ENST00000513352 SCN1AP35498 2009 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 PPEF2O14830 753 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 FGF18O76093 207 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms