RNA–Protein interactions for RNA: YNL086W

SNN1, Transcript of Subunit of the BLOC-1 complex involved in endosomal maturation, yeast

Gene SNN1, Length 309 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNN1	YNL086W	YOL163W	P0CF20	169 aa		4.9	□□□□□ -1.63
SNN1	YNL086W	YCR100C	P25606	316 aa		4.9	□□□□□ -1.63
SNN1	YNL086W	GDH2	P33327	1092 aa	Known RBP	4.9	□□□□□ -1.63
SNN1	YNL086W	PFS2	P42841	465 aa	Known RBP	4.9	□□□□□ -1.63
SNN1	YNL086W	GPI15	P53961	229 aa		4.9	□□□□□ -1.63
SNN1	YNL086W	YPR127W	Q06494	345 aa		4.9	□□□□□ -1.63
SNN1	YNL086W	MIM1	Q08176	113 aa		4.9	□□□□□ -1.63
SNN1	YNL086W	RRS1	Q08746	203 aa	Known RBP	4.9	□□□□□ -1.63
SNN1	YNL086W	SFM1	Q12314	213 aa		4.9	□□□□□ -1.63
SNN1	YNL086W	RAD7	P06779	565 aa		4.89	□□□□□ -1.63
SNN1	YNL086W	YAK1	P14680	807 aa		4.89	□□□□□ -1.63
SNN1	YNL086W	PET9	P18239	318 aa	Known RBP	4.89	□□□□□ -1.63
SNN1	YNL086W	PCL1	P24867	279 aa		4.89	□□□□□ -1.63
SNN1	YNL086W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
SNN1	YNL086W	SIP2	P34164	415 aa	Known RBP	4.89	□□□□□ -1.63
SNN1	YNL086W	YKR015C	P36111	568 aa		4.89	□□□□□ -1.63
SNN1	YNL086W	QDR3	P38227	689 aa		4.89	□□□□□ -1.63
SNN1	YNL086W	GEP7	P53171	287 aa		4.89	□□□□□ -1.63
SNN1	YNL086W	YLR281C	Q05863	155 aa		4.89	□□□□□ -1.63
SNN1	YNL086W	MFG1	Q07684	458 aa		4.89	□□□□□ -1.63
SNN1	YNL086W	MIG1	P27705	504 aa		4.88	□□□□□ -1.63
SNN1	YNL086W	YHR035W	P38769	630 aa		4.88	□□□□□ -1.63
SNN1	YNL086W	YER079W	P40052	210 aa	Known RBP	4.88	□□□□□ -1.63
SNN1	YNL086W	GWT1	P47026	490 aa		4.88	□□□□□ -1.63
SNN1	YNL086W	EFM3	P47163	339 aa		4.88	□□□□□ -1.63
SNN1	YNL086W	RNH202	Q05635	350 aa		4.88	□□□□□ -1.63
SNN1	YNL086W	DSF1	P0CX08	502 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	YNR073C	P0CX09	502 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	SUR1	P33300	382 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	GPI18	P38211	433 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	FIG1	P38224	298 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	YBR096W	P38256	230 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	PCL7	P40186	285 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	YGL235W	P53071	178 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	NSA1	P53136	463 aa	Predicted RBP	4.87	□□□□□ -1.63
SNN1	YNL086W	ODC1	Q03028	310 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	VPS71	Q03433	280 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	BNA7	Q04066	261 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	RRT8	Q08219	342 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	ORT1	Q12375	292 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	MRX4	Q12467	430 aa		4.87	□□□□□ -1.63
SNN1	YNL086W	MSW1	P04803	379 aa		4.86	□□□□□ -1.63
SNN1	YNL086W	MRPS28	P21771	286 aa		4.86	□□□□□ -1.63
SNN1	YNL086W	LSB5	P25369	354 aa		4.86	□□□□□ -1.63
SNN1	YNL086W	IES6	P32617	166 aa		4.86	□□□□□ -1.63
SNN1	YNL086W	DIM1	P41819	318 aa	Known RBP	4.86	□□□□□ -1.63
SNN1	YNL086W	SSN8	P47821	323 aa		4.86	□□□□□ -1.63
SNN1	YNL086W	YDR391C	Q04170	232 aa		4.86	□□□□□ -1.63
SNN1	YNL086W	YDR114C	Q04597	100 aa		4.86	□□□□□ -1.63
SNN1	YNL086W	NSL1	Q12143	216 aa		4.86	□□□□□ -1.63
SNN1	YNL086W	YDL199C	Q12407	687 aa		4.86	□□□□□ -1.63
SNN1	YNL086W	YOL162W	P0CF19	215 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	RPL5	P26321	297 aa	Known RBP	4.85	□□□□□ -1.63
SNN1	YNL086W	IST2	P38250	946 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	HPM1	P40481	377 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	SLM1	P40485	686 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	BAT2	P47176	376 aa	Known RBP	4.85	□□□□□ -1.63
SNN1	YNL086W	PHB2	P50085	310 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	YNR048W	P53740	393 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	WSC2	P53832	503 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	STD1	Q02794	444 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	YDC1	Q02896	317 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	RRN5	Q02983	363 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	BET5	Q03630	159 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	SEC13	Q04491	297 aa	Known RBP	4.85	□□□□□ -1.63
SNN1	YNL086W	SNT309	Q06091	175 aa	Predicted RBP	4.85	□□□□□ -1.63
SNN1	YNL086W	FCY22	Q12119	530 aa		4.85	□□□□□ -1.63
SNN1	YNL086W	COX5B	P00425	151 aa		4.84	□□□□□ -1.63
SNN1	YNL086W	MCH2	P36032	473 aa		4.84	□□□□□ -1.63
SNN1	YNL086W	PEX32	P38292	413 aa		4.84	□□□□□ -1.63
SNN1	YNL086W	UFD1	P53044	361 aa		4.84	□□□□□ -1.63
SNN1	YNL086W	SCW4	P53334	386 aa	Known RBP	4.84	□□□□□ -1.63
SNN1	YNL086W	FMP42	Q04991	504 aa		4.84	□□□□□ -1.63
SNN1	YNL086W	RRP9	Q06506	573 aa	Known RBP	4.84	□□□□□ -1.63
SNN1	YNL086W	GEP3	Q08622	556 aa		4.84	□□□□□ -1.63
SNN1	YNL086W	CSM1	P25651	190 aa		4.83	□□□□□ -1.64
SNN1	YNL086W	TIP1	P27654	210 aa	Predicted RBP	4.83	□□□□□ -1.64
SNN1	YNL086W	YBR241C	P38142	488 aa		4.83	□□□□□ -1.64
SNN1	YNL086W	ARC40	P38328	384 aa	Known RBP	4.83	□□□□□ -1.64
SNN1	YNL086W	OST1	P41543	476 aa	Known RBP	4.83	□□□□□ -1.64
SNN1	YNL086W	NUP49	Q02199	472 aa		4.83	□□□□□ -1.64
SNN1	YNL086W	DYN3	Q04949	312 aa		4.83	□□□□□ -1.64
SNN1	YNL086W	SFH1	Q06168	426 aa		4.83	□□□□□ -1.64
SNN1	YNL086W	YDL114W	Q07530	308 aa		4.83	□□□□□ -1.64
SNN1	YNL086W	SYC1	Q08553	188 aa	Predicted RBP	4.83	□□□□□ -1.64
SNN1	YNL086W	PEX27	Q08580	376 aa		4.83	□□□□□ -1.64
SNN1	YNL086W	TIM18	Q08749	192 aa		4.83	□□□□□ -1.64
SNN1	YNL086W	SPC3	Q12133	184 aa		4.83	□□□□□ -1.64
SNN1	YNL086W	APC2	Q12440	853 aa		4.83	□□□□□ -1.64
SNN1	YNL086W	ATP6	P00854	259 aa		4.82	□□□□□ -1.64
SNN1	YNL086W	RPC40	P07703	335 aa	Known RBP	4.82	□□□□□ -1.64
SNN1	YNL086W	NAM2	P11325	894 aa		4.82	□□□□□ -1.64
SNN1	YNL086W	STE18	P18852	110 aa		4.82	□□□□□ -1.64
SNN1	YNL086W	NDC1	P32500	655 aa		4.82	□□□□□ -1.64
SNN1	YNL086W	RCY1	P39531	840 aa		4.82	□□□□□ -1.64
SNN1	YNL086W	LOH1	P47055	219 aa		4.82	□□□□□ -1.64
SNN1	YNL086W	POP6	P53218	158 aa		4.82	□□□□□ -1.64
SNN1	YNL086W	DIG2	Q03373	323 aa	Known RBP	4.82	□□□□□ -1.64
SNN1	YNL086W	GPI17	Q04080	534 aa		4.82	□□□□□ -1.64
SNN1	YNL086W	UTP15	Q04305	513 aa	Known RBP	4.82	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms