RNA–Protein interactions for RNA: YML112W

CTK3, Transcript of Gamma subunit of C-terminal domain kinase I, yeastyeast

Gene CTK3, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTK3YML112W YOL162WP0CF19 215 aa1.18□□□□□ -2.22
CTK3YML112W POX1P13711 748 aa1.18□□□□□ -2.22
CTK3YML112W KSS1P14681 368 aa1.18□□□□□ -2.22
CTK3YML112W LDB7P38210 180 aa1.18□□□□□ -2.22
CTK3YML112W MIC12P38341 106 aa1.18□□□□□ -2.22
CTK3YML112W BIG1P38813 335 aa1.18□□□□□ -2.22
CTK3YML112W RCY1P39531 840 aa1.18□□□□□ -2.22
CTK3YML112W ERG10P41338 398 aaKnown RBP1.18□□□□□ -2.22
CTK3YML112W HAM1P47119 197 aaKnown RBP1.18□□□□□ -2.22
CTK3YML112W NBP35P52920 328 aa1.18□□□□□ -2.22
CTK3YML112W SWS2P53937 143 aa1.18□□□□□ -2.22
CTK3YML112W YMR279CQ03263 540 aa1.18□□□□□ -2.22
CTK3YML112W BTS1Q12051 335 aa1.18□□□□□ -2.22
CTK3YML112W GET4Q12125 312 aa1.18□□□□□ -2.22
CTK3YML112W YRA1Q12159 226 aaKnown RBP1.18□□□□□ -2.22
CTK3YML112W YPR011CQ12251 326 aa1.18□□□□□ -2.22
CTK3YML112W ATG31Q12421 196 aa1.18□□□□□ -2.22
CTK3YML112W MSF1P08425 469 aa1.17□□□□□ -2.22
CTK3YML112W RPS24AP0CX31 135 aaKnown RBP1.17□□□□□ -2.22
CTK3YML112W RPS24BP0CX32 135 aaKnown RBP1.17□□□□□ -2.22
CTK3YML112W TCP1P12612 559 aaKnown RBP1.17□□□□□ -2.22
CTK3YML112W SEC22P22214 214 aa1.17□□□□□ -2.22
CTK3YML112W PBN1P25580 416 aa1.17□□□□□ -2.22
CTK3YML112W ADE1P27616 306 aa1.17□□□□□ -2.22
CTK3YML112W PEX4P29340 183 aa1.17□□□□□ -2.22
CTK3YML112W RIB1P38066 345 aa1.17□□□□□ -2.22
CTK3YML112W RTC3P38804 111 aaPredicted RBP1.17□□□□□ -2.22
CTK3YML112W DDI1P40087 428 aa1.17□□□□□ -2.22
CTK3YML112W ICE2P40499 491 aa1.17□□□□□ -2.22
CTK3YML112W GOT1Q03554 138 aa1.17□□□□□ -2.22
CTK3YML112W GIM5Q04493 163 aa1.17□□□□□ -2.22
CTK3YML112W ABP140Q08641 628 aaKnown RBP1.17□□□□□ -2.22
CTK3YML112W MED4Q12343 284 aa1.17□□□□□ -2.22
CTK3YML112W ATO3Q12359 275 aa1.17□□□□□ -2.22
CTK3YML112W YCL012CQ8J0M4 134 aa1.17□□□□□ -2.22
CTK3YML112W YDR157WA0A023PZE8 133 aa1.16□□□□□ -2.22
CTK3YML112W JIP3O13555 125 aa1.16□□□□□ -2.22
CTK3YML112W DSF1P0CX08 502 aa1.16□□□□□ -2.22
CTK3YML112W YNR073CP0CX09 502 aa1.16□□□□□ -2.22
CTK3YML112W RPL35AP0CX84 120 aaKnown RBP1.16□□□□□ -2.22
CTK3YML112W RPL35BP0CX85 120 aaKnown RBP1.16□□□□□ -2.22
CTK3YML112W MRP1P10662 321 aaKnown RBP1.16□□□□□ -2.22
CTK3YML112W NHP6BP11633 99 aaKnown RBP1.16□□□□□ -2.22
CTK3YML112W COQ1P18900 473 aa1.16□□□□□ -2.22
CTK3YML112W RPS5P26783 225 aaKnown RBP1.16□□□□□ -2.22
CTK3YML112W PPA2P28239 310 aa1.16□□□□□ -2.22
CTK3YML112W VMA11P32842 164 aa1.16□□□□□ -2.22
CTK3YML112W PRP18P33411 251 aaPredicted RBP1.16□□□□□ -2.22
CTK3YML112W YPT52P36018 234 aaKnown RBP1.16□□□□□ -2.22
CTK3YML112W PRS4P38063 326 aaPredicted RBP1.16□□□□□ -2.22
CTK3YML112W YER121WP40076 114 aa1.16□□□□□ -2.22
CTK3YML112W YNL194CP40169 301 aa1.16□□□□□ -2.22
CTK3YML112W AGE2P40529 298 aa1.16□□□□□ -2.22
CTK3YML112W YKE4P40544 346 aa1.16□□□□□ -2.22
CTK3YML112W DSN1P40568 576 aa1.16□□□□□ -2.22
CTK3YML112W CIS3P47001 227 aa1.16□□□□□ -2.22
CTK3YML112W CWC23P52868 283 aaPredicted RBP1.16□□□□□ -2.22
CTK3YML112W YGL159WP53110 370 aa1.16□□□□□ -2.22
CTK3YML112W NOP19P53317 196 aaPredicted RBP1.16□□□□□ -2.22
CTK3YML112W YIP3P53633 176 aa1.16□□□□□ -2.22
CTK3YML112W CUS2P53830 285 aaPredicted RBP1.16□□□□□ -2.22
CTK3YML112W CDC14Q00684 551 aa1.16□□□□□ -2.22
CTK3YML112W SRL4Q03085 281 aa1.16□□□□□ -2.22
CTK3YML112W RRP17Q04031 235 aaPredicted RBP1.16□□□□□ -2.22
CTK3YML112W BNA7Q04066 261 aa1.16□□□□□ -2.22
CTK3YML112W CDC123Q05791 360 aa1.16□□□□□ -2.22
CTK3YML112W ATG17Q06410 417 aa1.16□□□□□ -2.22
CTK3YML112W YPR147CQ06522 304 aaKnown RBP1.16□□□□□ -2.22
CTK3YML112W GPM2Q12008 311 aa1.16□□□□□ -2.22
CTK3YML112W YPL119C-AQ3E751 87 aa1.16□□□□□ -2.22
CTK3YML112W CMC2Q3E7A4 109 aa1.16□□□□□ -2.22
CTK3YML112W THP2O13539 261 aaKnown RBP1.15□□□□□ -2.23
CTK3YML112W COX2P00410 251 aa1.15□□□□□ -2.23
CTK3YML112W Q0255P03881 472 aa1.15□□□□□ -2.23
CTK3YML112W RPP0P05317 312 aaKnown RBP1.15□□□□□ -2.23
CTK3YML112W YHR032W-AP0C5N6 59 aa1.15□□□□□ -2.23
CTK3YML112W MDH2P22133 377 aa1.15□□□□□ -2.23
CTK3YML112W MDH3P32419 343 aaKnown RBP RIP-Chip data1.15□□□□□ -2.23not detected
CTK3YML112W UBC6P33296 250 aaPredicted RBP1.15□□□□□ -2.23
CTK3YML112W TAF14P35189 244 aa1.15□□□□□ -2.23
CTK3YML112W FZO1P38297 855 aa1.15□□□□□ -2.23
CTK3YML112W MTW1P39731 289 aa1.15□□□□□ -2.23
CTK3YML112W ERG28P40030 148 aa1.15□□□□□ -2.23
CTK3YML112W RFC4P40339 323 aaKnown RBP1.15□□□□□ -2.23
CTK3YML112W COA1P40452 197 aa1.15□□□□□ -2.23
CTK3YML112W FMC1P40491 155 aa1.15□□□□□ -2.23
CTK3YML112W PRM10P42946 383 aa1.15□□□□□ -2.23
CTK3YML112W KAP114P53067 1004 aa1.15□□□□□ -2.23
CTK3YML112W OST6Q03723 332 aa1.15□□□□□ -2.23
CTK3YML112W PAM18Q07914 168 aa1.15□□□□□ -2.23
CTK3YML112W MEU1Q07938 337 aaKnown RBP RIP-Chip data1.15□□□□□ -2.23not detected
CTK3YML112W AKR2Q12013 749 aa1.15□□□□□ -2.23
CTK3YML112W EMP46Q12396 444 aa1.15□□□□□ -2.23
CTK3YML112W YKL183C-AQ3E765 70 aa1.15□□□□□ -2.23
CTK3YML112W UBR2Q07963 1872 aa1.15□□□□□ -2.23
CTK3YML112W YLR462WO13556 202 aa1.14□□□□□ -2.23
CTK3YML112W HTB1P02293 131 aaKnown RBP1.14□□□□□ -2.23
CTK3YML112W HTB2P02294 131 aa1.14□□□□□ -2.23
CTK3YML112W RPL24AP04449 155 aaKnown RBP1.14□□□□□ -2.23
CTK3YML112W RPL9AP05738 191 aaKnown RBP1.14□□□□□ -2.23
Retrieved 100 of 5,963 RNA–protein pairs in 31.2 ms